Command line: [./exonerate -m p2g --showtargetgff -q ./TotesSeleno/SelW/franciscanaW2.fa -t subseq_G.intestinalisSelW22.fa --exhaustive yes]
Hostname: [ws101148.aulescm.upf.edu]

C4 Alignment:
------------
         Query: gi|152013691|gb|ABS19961.1| selenoprotein W2 [Artemia franciscana]
        Target: gi|157436709|gb|AACB02000006.1|:subseq(164919,20218) Giardia lamblia ATCC 50803 strain WB C6 ctg02_6, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 112
   Query range: 1 -> 74
  Target range: 10218 -> 9999

     2 : ValLysIleHisValGluTyrCysGlyAlaUnkGlyTyrAlaProArgTyrGlnGluLeu :    21
         :!!|||:!!||| !!!     |||  !  !   |||! !  !|||||||||.!.! !:!!
         MetLysLeuHisPheValMetCysLeuGlnCysGlySerArgProArgTyrAspGlyMet
 10218 : ATGAAGCTTCACTTTGTCATGTGCTTGCAGTGCGGTTCCAGGCCGAGGTACGACGGGATG : 10161

    22 : AlaAlaLysIleArgLysAlaAlaProAspAlaGluValSerGlyAsnValGlyArgArg :    41
           !  ! ! .!!!:!:!!  !  !  !||||||||| !!|||  !.!.!.!|||! !  !
         ArgGlnTyrPheLysGlnLysAsnValAspAlaGluPheSerPheGluAlaGlyProAsp
 10160 : CGCCAGTACTTCAAGCAGAAGAACGTGGACGCGGAATTTTCGTTCGAGGCGGGCCCCGAT : 10101

    42 : SerSerPheGluValThrValAsnGlyGluLeuIleHisSerLysLeuSerThrAsnGly :    61
         .!!||||||||||||:!!:!!:!!|||   ! !|||:!!|||||||||..!|||..!  !
         GlySerPheGluValSerMetAspGlyThrGlnIleTyrSerLysLeuGluThrGlyLys
 10100 : GGCTCCTTTGAGGTGTCGATGGACGGCACCCAGATTTACAGCAAGTTAGAGACAGGCAAG : 10041

    62 : PheProAspPheAspGluValValGluIleValIleSer :    74
         !:!|||  !  !  !|||:!!:!!!  |||:!!   |||
         TyrProThrProProGluLeuLeuAlaIleIleGluSer
 10040 : TACCCGACCCCTCCTGAGCTTCTTGCTATCATTGAGTCC : 10000

vulgar: gi|152013691|gb|ABS19961.1| 1 74 . gi|157436709|gb|AACB02000006.1|:subseq(164919,20218) 10218 9999 - 112 M 73 219
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|157436709|gb|AACB02000006.1|:subseq(164919,20218)	exonerate:protein2genome:local	gene	10000	10218	112	-	.	gene_id 1 ; sequence gi|152013691|gb|ABS19961.1| ; gene_orientation .
gi|157436709|gb|AACB02000006.1|:subseq(164919,20218)	exonerate:protein2genome:local	cds	10000	10218	.	-	.	
gi|157436709|gb|AACB02000006.1|:subseq(164919,20218)	exonerate:protein2genome:local	exon	10000	10218	.	-	.	insertions 0 ; deletions 0
gi|157436709|gb|AACB02000006.1|:subseq(164919,20218)	exonerate:protein2genome:local	similarity	10000	10218	112	-	.	alignment_id 1 ; Query gi|152013691|gb|ABS19961.1| ; Align 10219 2 219
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
