Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t fastasubseq_cruzi_genomic.fa]
Hostname: [ws101159.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: gi|70882932|gb|AAHK01000184.1|:subseq(8394,4374) Trypanosoma cruzi strain CL Brener tcruzi_1047053511211, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 326
   Query range: 1 -> 130
  Target range: 1996 -> 2374

    2 : SerAspLeuAsnGluGlnGluTrpArgValLysLeuSerProGluGlnPheArgValLeuAr :   22
        !.!|||:!!:!!!!:   ! !||||||  !||||||!!!||||||||||||!.!:!!|||||
        LysAspIleAspAspAlaAlaTrpArgArgLysLeuThrProGluGlnPheHisIleLeuAr
 1997 : AAAGACATTGACGACGCCGCATGGCGAAGGAAACTGACACCAGAACAGTTTCACATCCTGCG : 2057

   23 : gGluLysGlyThrGluAlaProPheValGlyLysTyrThrAspAsnLysAspGluGlyLeuT :   43
        |||||||||||||!!:   |||  ! !!|||  !|||!.!|||:!!   !!:  !|||  !|
        gGluLysGlyThrAsp---ProArgPheGlyProTyrAsnAspHisPheGluProGlyGluT
 2058 : AGAGAAGGGCACTGAC---CCACGCTTTGGGCCGTACAATGATCACTTTGAGCCAGGCGAGT : 2117

   44 : yrGluCysAlaGlyCysGlyThrProLeuPheLysSerThrGlnLysPheHisSerGlyCys :   63
        ||  !||||||!.!|||||||||! !|||!:!||||||  !..!||||||!.!!!!||||||
        yrLeuCysAlaAlaCysGlyThrLeuLeuTyrLysSerGluMetLysPheArgCysGlyCys
 2118 : ATTTATGCGCCGCATGTGGAACGCTGCTGTACAAGTCTGAGATGAAATTTCGCTGCGGCTGC : 2177

   64 : GlyTrpProSerPhePheAspSerLeuProAspAlaIleThrPheHisSerAspProSerIl :   84
        |||||||||:!!|||!::|||!!!:!!|||!  |||:!:      !....!!!:|||..!! 
        GlyTrpProAlaPheTrpAspCysValProGlyAlaVal------ArgGluGluProAspSe
 2178 : GGCTGGCCAGCGTTTTGGGACTGCGTTCCAGGGGCGGTG------CGGGAGGAGCCTGACAG : 2234

   85 : eProGlyArgProArgThrGluIleCysCysLysLysCysGlyGlyHisLeuGlyHisValP :  105
        !  !|||     !||||||||||||   |||!!.  !|||..!.!!||||||||||||:!!|
        rAspGly---ValArgThrGluIleValCysAsnAlaCysAsnSerHisLeuGlyHisLeuP
 2235 : TGACGGG---GTGCGCACGGAGATTGTGTGCAATGCATGCAACAGTCATTTGGGCCATTTAT : 2294

  106 : heLysGlyGluGlyPhe<->AsnThrProIleAspGlnArgHisCysValAsnSerIleSer :  124
        ||:::|||||||||.!!   ||| !!|||  !:!!:!!||||||||||||||||||! !|||
        heArgGlyGluGlyLeuCysAsnProProProAsnGluArgHisCysValAsnSerThrSer
 2295 : TTCGTGGCGAGGGGCTTTGCAACCCTCCGCCAAATGAGCGACACTGCGTAAATAGCACCTCG : 2354

  125 : LeuAsnPheLysProSer :  130
        :!!..!|||:!!||||||
        IleArgPheGlnProSer
 2355 : ATCCGTTTTCAGCCGAGT : 2374

vulgar: scaffold_27 1 130 . gi|70882932|gb|AAHK01000184.1|:subseq(8394,4374) 1996 2374 + 326 M 26 78 G 1 0 M 48 144 G 2 0 M 8 24 G 1 0 M 23 69 G 0 3 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|70882932|gb|AAHK01000184.1|:subseq(8394,4374)	exonerate:protein2genome:local	gene	1997	2374	326	+	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation .
gi|70882932|gb|AAHK01000184.1|:subseq(8394,4374)	exonerate:protein2genome:local	cds	1997	2374	.	+	.	
gi|70882932|gb|AAHK01000184.1|:subseq(8394,4374)	exonerate:protein2genome:local	exon	1997	2374	.	+	.	insertions 3 ; deletions 4
gi|70882932|gb|AAHK01000184.1|:subseq(8394,4374)	exonerate:protein2genome:local	similarity	1997	2374	326	+	.	alignment_id 1 ; Query scaffold_27 ; Align 1997 2 78 ; Align 2075 29 144 ; Align 2219 79 24 ; Align 2243 88 69 ; Align 2315 111 60
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
