TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Hibrido_in_silico
         (132 letters)

Database: genome.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAFD02000006.1| Thalassiosira pseudonana CCMP1335 chromosome ...   152   4e-38
gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome ...    74   3e-14
gb|AAFD02000003.1| Thalassiosira pseudonana CCMP1335 chromosome ...    42   9e-05
gb|AAFD02000009.1| Thalassiosira pseudonana CCMP1335 chromosome ...    32   0.15 
gb|AAFD02000026.1| Thalassiosira pseudonana CCMP1335 chromosome ...    31   0.26 
gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335 chromosome ...    30   0.57 
gb|AAFD02000010.1| Thalassiosira pseudonana CCMP1335 chromosome ...    28   1.3  
gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335 chromosome ...    28   1.3  
gb|AAFD02000012.1| Thalassiosira pseudonana CCMP1335 chromosome ...    26   6.3  
gb|AAFD02000011.1| Thalassiosira pseudonana CCMP1335 chromosome ...    26   6.3  

>gb|AAFD02000006.1| Thalassiosira pseudonana CCMP1335 chromosome 4 THAPSchr_4_Cont6, whole
              genome shotgun sequence
          Length = 1267202

 Score =  152 bits (385), Expect = 4e-38
 Identities = 82/145 (56%), Positives = 95/145 (65%), Gaps = 18/145 (12%)
 Frame = +3

Query: 6      EQEWNEMLSKQQYFILRQGGTESPYSSILEAEERPGVYACAGCGTPLFDGSQKFHSGTGW 65
              E EWNEMLSKQQYFILRQGGTESPYSSILEAEERPGVYACAGCGTPLFDGSQKFHSGTGW
Sbjct: 888906 ESEWNEMLSKQQYFILRQGGTESPYSSILEAEERPGVYACAGCGTPLFDGSQKFHSGTGW 889085

Query: 66     PSFFDSLPDAITFHSDPSIPG------------RPRTEICCKKCGGHLGHVFKGEGF--- 110
              PSF       +   ++P +                  E+ C  CGGHLG VF  +G+   
Sbjct: 889086 PSF---ATPVMNDSANPKVSNVEMEDVSQIQYQLAGAEVRCHSCGGHLGDVF-ADGYLFV 889253

Query: 111    NTPI---DQRHCVNSISLNFKPSKQ 132
               TP     +R+C++  +L F P +Q
Sbjct: 889254 GTPAFISGKRYCIDGGALVFVPKEQ 889328


>gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont4, whole
              genome shotgun sequence
          Length = 2234390

 Score = 73.9 bits (180), Expect = 3e-14
 Identities = 36/86 (41%), Positives = 51/86 (59%)
 Frame = +1

Query: 20     ILRQGGTESPYSSILEAEERPGVYACAGCGTPLFDGSQKFHSGTGWPSFFDSLPDAITFH 79
              +L+ G TE  +SS+    +  G+Y+CA C +PLF  + K+ SG+GWPSF+ ++ D+    
Sbjct: 349966 VLKLGFTEPAWSSLYNYNKSSGIYSCANCRSPLFSSAAKYDSGSGWPSFWRTV-DSERVS 350142

Query: 80     SDPSIPGRPRTEICCKKCGGHLGHVF 105
                    G  R E  C  CGGHLGHVF
Sbjct: 350143 LKKEWDG--RIECLCANCGGHLGHVF 350214



 Score = 26.2 bits (56), Expect = 6.3
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = -3

Query: 29      PYSSILEAEERPGVYACAGCGTPLFDGSQKFHSGTGWPSFFDSLPDAITFHSDPSIP 85
               P+   L   +R      +G  TP    SQK    T  P    SLP A T H  P+IP
Sbjct: 1272243 PHHPTLPNTKRKPPTCHSGHATPKKRNSQKTSQATMPPP---SLPPAPTLHLPPTIP 1272082


>gb|AAFD02000003.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont3, whole
              genome shotgun sequence
          Length = 472755

 Score = 42.4 bits (98), Expect = 9e-05
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
 Frame = -3

Query: 10     NEMLSKQQYFILRQGGTESPYSSI-----------LEAEERP--GVYACAGCGTPLF--- 53
              N  +S+Q   +L +GGT+ P+  +           L++   P  GV+ CA    PLF   
Sbjct: 170707 NNYVSEQAKKVLLEGGTDPPHVKLTNNGYDFSTNHLQSLHFPHVGVFTCAVGLMPLFTTA 170528

Query: 54     DGSQKFHSGT-GWPSFFDSLPDAITFHSDPSIPGRP-RTEICCKKCGGHLGHVF-KGEGF 110
              D SQ   + + GW SF   +         P++     R E+   K G HLGH F + +G+
Sbjct: 170527 DLSQSISTASSGWLSFKSVISQDHIVLVHPTLNDLDQRIEVLDAKSGCHLGHYFGRVDGY 170348

Query: 111    NTPIDQRHCVNSISLNFKP 129
                      C+N+ +LNF P
Sbjct: 170347 --------CINASALNFTP 170315


>gb|AAFD02000009.1| Thalassiosira pseudonana CCMP1335 chromosome 5 THAPSchr_5_Cont9, whole
               genome shotgun sequence
          Length = 2305972

 Score = 31.6 bits (70), Expect = 0.15
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = -2

Query: 38      ERPGVYACAGCGTPLF-DGSQKFHSGTGWPSFFDSLPDAITFHSDPSIPGRPRTEICCKK 96
               E+ G  +C+ C +  + DGS+     + WP+F  + P A+       I G+     CC  
Sbjct: 2216847 EKVGTSSCSFCNSSKYSDGSKSGREASAWPAFMIAGPIALNSEKSLQIVGQ---NFCCT- 2216680

Query: 97      CGGHLGHVFKGEGFNTPIDQRHCVNSI-SLNFKPS 130
                  H+ H+      N  ++    + SI  LN K S
Sbjct: 2216679 --NHMVHLLLT*ACND*VELCSTLTSIRQLNSKDS 2216581


>gb|AAFD02000026.1| Thalassiosira pseudonana CCMP1335 chromosome 15 THAPSchr_15_Cont26, whole
              genome shotgun sequence
          Length = 668626

 Score = 30.8 bits (68), Expect = 0.26
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
 Frame = -1

Query: 20     ILRQGGTESPYSSILEAEERPGVYACAGCGTPLFDG-------SQKFHSGTGWPSFFDSL 72
              ++++GG       I+    R GVY  AG   P   G       S  ++  T W  F  S 
Sbjct: 592825 VIKEGGGAFSSDDIVPLGGRCGVYPTAGTSCPENYGLLNVTILSDVYNQETSWEVFDTST 592646

Query: 73     PDAITFHSDPSIPGRPRTEICC 94
                 I  +    +P   +TE+ C
Sbjct: 592645 GQVIALNEYKLVPDTLQTELSC 592580


>gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335 chromosome 20 THAPSchr_20_Cont36, whole
              genome shotgun sequence
          Length = 621618

 Score = 29.6 bits (65), Expect = 0.57
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 49     GTPLFDGSQKFHSGTGWPSFFDSLPDAITFHSDPSIPGRPRTEICCK 95
              G PL D    FH+ + WPS++  L   + ++  P     PR   CC+
Sbjct: 465109 GNPLEDTPHIFHTSSSWPSYY-CLVSPLRYY*RPM--*EPRVHCCCQ 464978


>gb|AAFD02000010.1| Thalassiosira pseudonana CCMP1335 chromosome 6 THAPSchr_6_Cont10, whole
               genome shotgun sequence
          Length = 2071480

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 61      SGTGWPSFFDSLPDAITFHSDPSIPGRPRTEICC 94
               S  G+P ++D+L D +   +  +  GR  TE CC
Sbjct: 1182246 SDGGYPGYYDALTDTVVQAAFANTRGRVDTEGCC 1182347



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 66      PSFFDSLPDAITFHSDPSI 84
               PSF  S+P  I+FHS P++
Sbjct: 1332234 PSFLLSIPFLISFHSSPAL 1332290


>gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335 chromosome 3 THAPSchr_3_Cont5, whole
               genome shotgun sequence
          Length = 2440052

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 14      SKQQYFILRQGGTESPYSSILEAEERPGVYACAGCGTPLFDGSQKF 59
               SK+QY+ L+ GG   PY ++ E              T L DGS +F
Sbjct: 2037177 SKRQYYELQCGGGSQPYHAVFETPGNGWTMRVTNTKT-LHDGSHEF 2037043


>gb|AAFD02000012.1| Thalassiosira pseudonana CCMP1335 chromosome 9 THAPSchr_9_Cont12, whole
              genome shotgun sequence
          Length = 1191060

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 71     SLPDAITFHSDPSIPGRPRTEICCKKCGGHLG 102
              SLP     H  PS P  P +E  C     HLG
Sbjct: 987174 SLPRLSPDHMSPSCPTMPTSEFLCSIAFMHLG 987079



 Score = 25.8 bits (55), Expect = 8.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 71     SLPDAITFHSDPSIPGRPRTEICCKKCGGHLG 102
              SLP     H  PS P  P +E  C     HLG
Sbjct: 991413 SLPRLSPDHMSPSCPTMPTSEFLCSIAFIHLG 991318


>gb|AAFD02000011.1| Thalassiosira pseudonana CCMP1335 chromosome 8 THAPSchr_8_Cont11, whole
              genome shotgun sequence
          Length = 1267198

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 77     TFHSDPSIPGRPRTEICCKKCGGHLGHVFKGEGFNTPI 114
              +F  D  +P  P    CC KC    GHV   E    PI
Sbjct: 578265 SFVID*FVPSSPT--FCCTKCIVRCGHVMYAERIEQPI 578158


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:14 PM
  Number of letters in database: 29,453,142
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,931,178
Number of Sequences: 113
Number of extensions: 98747
Number of successful extensions: 492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 220
length of query: 132
length of database: 9,817,714
effective HSP length: 88
effective length of query: 44
effective length of database: 9,807,770
effective search space: 431541880
effective search space used: 431541880
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
