Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t purpureumCONTRALeishmania_mexicana.2009.fastafetch.fa]
Hostname: [ws101168.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: mex590i18.q1k [revcomp]
         Model: protein2genome:local
     Raw score: 317
   Query range: 1 -> 132
  Target range: 24522 -> 24138

     2 : SerAspLeuAsnGluGlnGluTrpArgValLysLeuSerProGluGlnPheArgValLeu :    21
         !.!|||:!!!:!!!::!!|||||||||  !   |||!!! !!:!!|||!:!  !:!!|||
         LysAspMetSerAspGluGluTrpArgArgValLeuThrAlaGlnGlnTyrTyrIleLeu
 24522 : AAGGACATGAGCGATGAGGAGTGGAGGCGTGTCCTCACAGCACAGCAGTACTATATTCTG : 24465

    22 : ArgGluLysGlyThrGluAlaProPheValGlyLysTyrThrAspAsnLysAspGluGly :    41
         |||||||||||||||!!:   ||| !!! !|||||||||  !|||  !   |||||||||
         ArgGluLysGlyThrAsp---ProValGlyGlyLysTyrAspAspValPheAspGluGly
 24464 : CGCGAGAAGGGCACGGAC---CCTGTTGGTGGGAAGTATGACGACGTCTTCGACGAGGGG : 24408

    42 : LeuTyrGluCysAlaGlyCysGlyThrProLeuPheLysSerThrGlnLysPheHisSer :    61
           !|||! !||||||||||||  !|||||||||!:!  !|||:!!..!||||||  !!!!
         GluTyrValCysAlaGlyCysLysThrProLeuTyrLeuSerSerMetLysPheAlaCys
 24407 : GAGTACGTGTGCGCCGGGTGCAAGACACCGCTTTACCTGTCTTCCATGAAATTCGCCTGC : 24348

    62 : GlyCysGlyTrpProSerPhePheAspSerLeuProAspAlaIleThrPheHisSerAsp :    81
         |||||||||||||||.!!|||!:!|||!!!:!!||| !   !:!:      !.!..!.!.
         GlyCysGlyTrpProGlyPheTyrAspCysIleProLysArgVal------ArgGluGln
 24347 : GGCTGTGGCTGGCCTGGGTTTTACGACTGCATCCCCAAACGGGTG------CGCGAGCAG : 24294

    82 : ProSerIleProGlyArgProArgThrGluIleCysCysLysLysCysGlyGlyHisLeu :   101
         |||..!!    !||||||   |||..!||||||  !|||!!.  !|||..!.!!||||||
         ProAspLysAspGlyArg---ArgValGluIleValCysAsnAlaCysAsnSerHisLeu
 24293 : CCGGACAAGGACGGCCGC---CGTGTCGAGATTGTCTGCAACGCGTGCAACAGCCACCTC : 24237

   102 : GlyHisValPheLysGlyGluGlyPhe<->AsnThrProIleAspGlnArgHisCysVal :   120
         ||||||||||||::: !!|||||||||   ||| !!|||   :!!:!!||||||||||||
         GlyHisValPheArgArgGluGlyPheArgAsnProProProAsnGluArgHisCysVal
 24236 : GGTCACGTCTTCCGTAGGGAGGGCTTCCGCAACCCACCACCGAATGAGCGGCACTGCGTG : 24177

   121 : AsnSerIleSerLeuAsnPheLysProSerLysGln :   132
         ||||||! !|||:!!!  .!!::!|||!!!:!!|||
         AsnSerThrSerIleIleLeuArgProThrGlnGln
 24176 : AACAGCACCTCCATCATACTTCGGCCCACGCAGCAG : 24139

vulgar: scaffold_27 1 132 . mex590i18.q1k 24522 24138 - 317 M 26 78 G 1 0 M 48 144 G 2 0 M 9 27 G 1 0 M 22 66 G 0 3 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
mex590i18.q1k	exonerate:protein2genome:local	gene	24139	24522	317	-	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation .
mex590i18.q1k	exonerate:protein2genome:local	cds	24139	24522	.	-	.	
mex590i18.q1k	exonerate:protein2genome:local	exon	24139	24522	.	-	.	insertions 3 ; deletions 4
mex590i18.q1k	exonerate:protein2genome:local	similarity	24139	24522	317	-	.	alignment_id 1 ; Query scaffold_27 ; Align 24523 2 78 ; Align 24445 29 144 ; Align 24301 79 27 ; Align 24274 89 66 ; Align 24205 111 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
