Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t fastafetch_perkinsus.fa]
Hostname: [ws101159.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: gi|126302027|gb|AAXJ01000478.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296293918, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 192
   Query range: 52 -> 129
  Target range: 22982 -> 23250

    53 : PheLysSerThrGlnLysPheHisSerGlyCysGlyTrpProSerPhePheAspSerLeu :    72
         !:! ! |||:!!!!.|||||| !!!!!|||||||||||||||.!!!:!!::  !!:!:!!
         TyrAspSerSerHisLysPheAspCysGlyCysGlyTrpProGlyTyrTrpThrAsnIle
 22983 : TACGATTCATCCCACAAGTTTGACTGTGGATGCGGATGGCCGGGGTATTGGACCAACATT : 23040

    73 : ProAspAlaIleThrPheHisSerAspProSerIleProGlyArgProArgThrGluIle :    92
           !!  |||:!!.!!   !..|||!!: !!..!      |||  !  !|||..!||||||
         GluGlyAlaValAlaGluArgSerGluThrAsp------GlySerGlyArgValGluIle
 23041 : GAGGGGGCGGTAGCTGAGCGAAGCGAGACTGAT------GGCTCTGGTCGAGTCGAGATC : 23094

    93 : CysCysLysLysCysGlyGlyHisLeuGlyHisValPheLysGlyGluGlyPhe{As}   :   111
           !|||  !|||||||||..!||||||||||||||||||:::|||||||||.!.{..}  
         ValCysAlaLysCysGlySerHisLeuGlyHisValPheArgGlyGluGlyMet{Gl}++
 23095 : GTCTGTGCGAAGTGCGGCTCCCATCTCGGACATGTATTTCGTGGTGAAGGGATG{GG}gt : 23153

   112 : >>>> Target Intron 1 >>>>  {n}ThrProIleAspGlnArgHisCysValAsn :   121
                   43 bp            {!}  !|||! !|||:!!|||||||||||||||
                                  ++{y}TyrProThrAspGluArgHisCysValAsn
 23154 : .........................ag{T}TACCCGACTGACGAACGACACTGTGTGAAC : 23224

   122 : SerIleSerLeuAsnPheLysPro :   129
         .!!!  ||||||:::|||||||||
         GlyThrSerLeuSerPheLysPro
 23225 : GGTACGAGTCTATCATTCAAGCCC : 23250

vulgar: scaffold_27 52 129 . gi|126302027|gb|AAXJ01000478.1| 22982 23250 + 192 M 31 93 G 2 0 M 25 75 S 0 2 5 0 2 I 0 39 3 0 2 S 1 1 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-02-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	gene	22983	23250	192	+	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation +
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	cds	22983	23152	.	+	.	
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	exon	22983	23152	.	+	.	insertions 0 ; deletions 2
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	splice5	23153	23154	.	+	.	intron_id 1 ; splice_site "GT"
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	intron	23153	23195	.	+	.	intron_id 1
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	splice3	23194	23195	.	+	.	intron_id 0 ; splice_site "AG"
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	cds	23196	23250	.	+	.	
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	exon	23196	23250	.	+	.	insertions 0 ; deletions 0
gi|126302027|gb|AAXJ01000478.1|	exonerate:protein2genome:local	similarity	22983	23250	192	+	.	alignment_id 1 ; Query scaffold_27 ; Align 22983 53 93 ; Align 23076 86 75 ; Align 23197 112 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
