TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= scaffold_27 dpurpureum selr protein
         (132 letters)

Database: genome.fa 
           14,463 sequences; 46,187,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig_0012951                                                         65   2e-11
Contig_0010553                                                         42   2e-04
Contig_0003307                                                         30   0.46 
Contig_0002453                                                         30   0.60 
Contig_0009977                                                         28   1.7  
Contig_0005485                                                         28   2.3  
Contig_0006034                                                         28   3.0  
Contig_0000410                                                         28   3.0  
Contig_0004046                                                         27   3.9  
Contig_0001198                                                         27   3.9  
Contig_0010419                                                         27   5.1  
Contig_0003522                                                         27   5.1  
Contig_0001531                                                         27   5.1  
Contig_0005934                                                         27   6.6  
Contig_0000328                                                         27   6.6  
Contig_0009382                                                         26   8.7  
Contig_0010906                                                         26   8.7  
Contig_0006947                                                         26   8.7  
Contig_0007488                                                         26   8.7  
Contig_0007823                                                         26   8.7  
Contig_0005470                                                         26   8.7  
Contig_0005624                                                         26   8.7  
Contig_0003086                                                         26   8.7  
Contig_0003381                                                         26   8.7  
Contig_0003667                                                         26   8.7  
Contig_0000364                                                         26   8.7  

>Contig_0012951 
          Length = 7620

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
 Frame = +2

Query: 4    LNEQEWRVKLSPEQFRVLREKGTEAPFVGKYTDNKDEGLYECAGCGTPLFKSTQKFHSGC 63
            + ++E    L+  Q+ V +   TE PF  +Y +N  EGLY     GTPLF S  K+ SG 
Sbjct: 7301 MKKKEELSHLTELQYEVTQNSKTEKPFENEYYNNYKEGLYVDIVDGTPLFLSIHKYDSGS 7480

Query: 64   GWPSFFDSLP-DAITFHSDPSIPGRPRTEICCKKCGGHLGHVF 105
            G P+F   +  + I    D S     RTE+  KK   HLGHVF
Sbjct: 7481 G*PAFTTPIDLEHIVELDDYSYKFAKRTEVRSKKANSHLGHVF 7609


>Contig_0010553 
          Length = 2613

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 40   EGLYECAGCGTPLFKSTQKFHSGCGWPSF 68
            +G + CA C  PL+ ++ KF +GCGWP+F
Sbjct: 1873 KGYFACAACRHPLYPASAKFAAGCGWPAF 1959



 Score = 35.4 bits (80), Expect = 0.014
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 86   GRPRTEICCKKCGGHLGHVFK 106
            G  R EI C  CGGHLGH+F+
Sbjct: 2549 GMKRVEIVCANCGGHLGHLFE 2611



 Score = 32.3 bits (72), Expect = 0.12
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 16   EQFRVLREKGTEAPFVGKYTDNKDEGLY 43
            EQFR+LR+KGTEAP  G +     E ++
Sbjct: 1400 EQFRILRKKGTEAPGTGAWRRRNAETIW 1483


>Contig_0003307 
          Length = 6586

 Score = 30.4 bits (67), Expect = 0.46
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 4    LNEQEWRVKLSPEQFRVLREKGTEAPFVGKYTDNKDEGLYECAGCGTPLFKSTQ 57
            +N+   R  L PE++  L EK  E P  G   +NKD+   E     TP++   Q
Sbjct: 1348 VNDSLRRAALGPERYARLVEKKAELPSAGHGGENKDQKTAEEHSLLTPVWMMRQ 1187


>Contig_0002453 
          Length = 10033

 Score = 30.0 bits (66), Expect = 0.60
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 80   SDPSIPGRPRTEICCKKCGGHLGHVFKGEG 109
            +DP +P  P++   C+K   HLG   +  G
Sbjct: 3887 ADPKLPSSPKSSAVCRKVAPHLGTAVRSSG 3798


>Contig_0009977 
          Length = 3474

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 91   EICCKKCGGHLG 102
            EICCK C GHLG
Sbjct: 1333 EICCKLCDGHLG 1298


>Contig_0005485 
          Length = 3764

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 33   KYTDNKDEGLYECAGCGTPLFKSTQKFHSGC 63
            K   N D  L+EC+GCG   F+ + +    C
Sbjct: 1828 KTRQNFDTALHECSGCGRQNFQQSLRVRKRC 1920


>Contig_0006034 
          Length = 6184

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
 Frame = -3

Query: 9    WRVKLSPEQFRVLREKGTEAPFVG-----------KYTDNKDEGLYECAGCGTPLFKSTQ 57
            WR+   P+  R +  + +  PF             ++   +  G  +    G   F S  
Sbjct: 1361 WRLPSRPQVRRRIGGRVSSRPFPPPSKISSEPAELRWNSCRSSGERDWNWSGETRFSSGN 1182

Query: 58   KFHSGCGWPSFFDSLPDAITFHSDPSIPGRPRTEICCKK 96
               S   +P F      A+      S P RPR   CC +
Sbjct: 1181 CMQSWFSFPGFLSPAKTAVASPGSCSRPRRPRASCCCMR 1065


>Contig_0000410 
          Length = 11227

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 81   DPSIPGRPRTEICCKKCGGHLGHVFKGEGFNTPIDQRH 118
            DPS  GR    +     G H+G V +GE   +P   +H
Sbjct: 3974 DPSGEGREERRLAAGIAGAHVGSVQEGEALCSPDAHQH 4087


>Contig_0004046 
          Length = 1106

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 46  AGCGTPLFKSTQKFHSGCGWPSFFDSLPDAI 76
           AGC +  F S    H+GC  P  F  LP ++
Sbjct: 932 AGCISTRFSSLLPTHTGCSHPLRFRRLPSSV 840


>Contig_0001198 
          Length = 7832

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 86   GRPRTEICCKKCGGHLGHVFKGE 108
            GRP   + C +CG H+     GE
Sbjct: 2818 GRPSVSVACARCGAHVAPATLGE 2750


>Contig_0010419 
          Length = 1536

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 54   KSTQKFHSGCGWPSFFDSLPDAITFHS 80
            ++TQ+   GC +P +F SLP +   HS
Sbjct: 1248 EATQQLSEGCCFPPWFVSLPSSGAVHS 1168


>Contig_0003522 
          Length = 11688

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
 Frame = +3

Query: 28   APFVGKYTDNKDEGLYEC------AGCGTPLFKSTQKF 59
            AP  GK+  ++D G Y C       GC +P   S Q F
Sbjct: 4614 APSTGKWLKSRDSGFYSCRFLLSSLGCVSPCRLSLQFF 4727


>Contig_0001531 
          Length = 6880

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 70   DSLPDAITFHSDPSIPG-RPRTEICCKKCG 98
            D +P       DP+ PG  PR   CC+ CG
Sbjct: 4709 DKIPAFADTSVDPAAPGLSPRALPCCRSCG 4620


>Contig_0005934 
          Length = 6607

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 69   FDSLPDAITFHSDPSIPGRPRTEICCKKCGGHLGH 103
            F+S   A  F    +  G PR+ +CC+  GG   H
Sbjct: 4128 FESTNSAANFLCPRNREGIPRSCVCCRGIGGEPSH 4232


>Contig_0000328 
          Length = 3977

 Score = 26.6 bits (57), Expect = 6.6
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = -1

Query: 10   RVKLSPEQFRVLREKGTEAPFVGKYTDNKDEGLYECAGCGTPLFKSTQKFHSGCGWPSFF 69
            R  L+PE F +L  + T A  +G  T N+D+    C  CG+              W S  
Sbjct: 1475 RTTLAPE-FSLLGHELTRANILGM-TKNEDQS*-TCRACGS----------IAIFWTSLC 1335

Query: 70   DSLPDAITFHSDPSIPGRPRTEICCK 95
             ++   +T H  P  P      +CC+
Sbjct: 1334 PTIGTPVTEHCSPEQPRILCFSVCCR 1257


>Contig_0009382 
          Length = 2932

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 66   PSFFDSLPDAITFHSDP 82
            PSF  ++PD + FHS P
Sbjct: 2139 PSFLHTVPDPVFFHSSP 2189


>Contig_0010906 
          Length = 2084

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 45  CAGCGTPLFKSTQKFHSGCGWPSFFDSLPDAITFHSDPSIPGRP 88
           C G  T  +  T  +  GC W S    +PD+     +PS P  P
Sbjct: 941 CVGIDTSAYIHTYLWTDGC*WKSLSSDIPDS*Q-SLNPSQPALP 1069


>Contig_0006947 
          Length = 5578

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
 Frame = +3

Query: 68  FFDSLPDAITFHSDPSIPGRPRTE----IC------CKKCGGHLGHVFKGEGFNTPIDQR 117
           F  SLP       D S+P RP T+    +C      C +C G    VF+           
Sbjct: 432 FIRSLP*DFPMARDKSLPQRPDTQSRCTVCLHPLFFCVRCSGVPCSVFRARDDLKLQSPS 611

Query: 118 HCVNSISLNFKPS 130
           H VN  SL   PS
Sbjct: 612 HFVNWFSLVEGPS 650


>Contig_0007488 
          Length = 4413

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 11/45 (24%)
 Frame = +1

Query: 60   HSGC-GWP------SFFDSLPDAITFHSDPSIP----GRPRTEIC 93
            H+ C GWP      SFFD    A+    DPS+P      P T +C
Sbjct: 3262 HNQCSGWPWHVSFASFFDISTVAVPHRIDPSLPIICVSCPWTAVC 3396


>Contig_0007823 
          Length = 2484

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 69   FDSLPDAITFHSDPSIPGRPRTEICCKKC 97
            FDS  DA +       PG  R  IC +KC
Sbjct: 1987 FDSSEDAASIPKRSGAPGDSRDIICLRKC 2073


>Contig_0005470 
          Length = 5453

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 58   KFHSGCGWPSFFDSLPDAITFHSDPSIPGRP 88
            +FH G  +    D L + +T    P IPGRP
Sbjct: 4977 RFHMGSRFDQLRDRLGEVMTT*RGPLIPGRP 4885


>Contig_0005624 
          Length = 2882

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 89  RTEICCKKCGGHLGHVFK 106
           +T+ CC  CGG LG V +
Sbjct: 933 QTDSCCWMCGGRLGQVLE 986


>Contig_0003086 
          Length = 3891

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 83   SIPGRPRTEICCKKCGGHLGH 103
            S+P RP  ++    C GH GH
Sbjct: 1608 SLPHRPHRQLSAFSCRGHAGH 1546


>Contig_0003381 
          Length = 14200

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 75    AITFHSDPSIPGRPRTEICCKKCGGHLGH 103
             A   HS P  P RPR  +  + CG HL H
Sbjct: 13415 ATVVHS-PRFPKRPRGALSFQDCGYHLQH 13498


>Contig_0003667 
          Length = 1034

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 82  PSIPGRPRTEICCKKCGGHLGH-VFKGEGFNTPIDQRHCVNSISLNFKPSK 131
           P +P RPR  +CC      L     K  G    I+Q  C +   ++  PS+
Sbjct: 509 PKLPHRPRPSLCCV*RSNFLPQSCAKSGGRKNRIEQSPCTHEHVVSCAPSR 661


>Contig_0000364 
          Length = 1934

 Score = 26.2 bits (56), Expect = 8.7
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +1

Query: 21   LREKGTEAPFVGKYTDNKDEGLYECAGCGTPLFKSTQKFHSGCGWPSFFDSLPD---AIT 77
            L ++G EA    + T  ++EG  EC    T   +  ++  +   +PS    LP       
Sbjct: 973  LDQRGAEATRPPRTTRGEEEGCQECVKQSTSRRRKRERLAAQGRFPSSHGPLPQRRPCFL 1152

Query: 78   FHSDPSIPGRP 88
                PS+ G P
Sbjct: 1153 VRPSPSLLGSP 1185


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 46,187,198
  Number of sequences in database:  14,463
  
Lambda     K      H
   0.319    0.139    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,746,936
Number of Sequences: 14463
Number of extensions: 205975
Number of successful extensions: 1200
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of query: 132
length of database: 15,395,732
effective HSP length: 90
effective length of query: 42
effective length of database: 14,094,062
effective search space: 591950604
effective search space used: 591950604
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
