Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t Giardia_intestinalis_fastafetch.fa --exhaustive yes]
Hostname: [ws101147.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: gi|157434878|gb|AACB02000019.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_19, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 200
   Query range: 11 -> 129
  Target range: 8178 -> 7830

   12 : LysLeuSerProGluGlnPheArgValLeuArgGluLysGlyThrGluAlaProPheValGl :   32
        :!!|||!!!|||! !|||  !!.!||||||  !.!. ! |||||||||  ! !!|||  !..
        GluLeuThrProAlaGlnArgAsnValLeuPheAsnHisGlyThrGluGlnAlaPheAsnAs
 8178 : GAGTTGACGCCTGCGCAGCGCAACGTGCTCTTCAACCATGGCACAGAACAAGCCTTTAACAA : 8118

   33 : yLysTyrThrAspAsnLysAspGluGlyLeuTyrGluCysAlaGlyCysGlyThrProLeuP :   53
        !:!!|||  !!    !|||..!..!|||  !|||   |||  !!.!|||  !  ! !!||||
        nGluTyrTyrAlaCysLysSerSerGlyThrTyrIleCysArgAlaCysHisLeuAlaLeuP
 8117 : CGAGTACTATGCATGCAAAAGCTCGGGAACATACATTTGTCGCGCTTGCCACCTTGCACTCT : 8055

   54 : heLysSerThrGlnLysPheHisSerGlyCysGlyTrpProSerPhePheAspSerLeuPro :   73
        ||!..|||  !.!.|||||| !!||||||  !||||||||||||||| ! ..! !!|||  !
        heSerSerGlyAspLysPheAspSerGlyThrGlyTrpProSerPheValSerProLeuAsp
 8054 : TCAGCTCCGGGGACAAGTTTGACTCTGGGACCGGCTGGCCATCCTTTGTGTCTCCACTTGAT : 7995

   74 : AspAlaIleThrPheHisSerAspProSerIleProGlyArgProArgThrGluIleCysCy :   94
         !!  !:!!..!   :!!!!! !!  !!!!  !! !..!! !  !|||||||||:!:  !||
        TyrArgValValAlaTyrThrHisAspThrSerHisAsnMetGluArgThrGluValHisCy
 7994 : TATCGCGTAGTAGCATATACGCATGATACCTCTCATAATATGGAGCGCACAGAGGTGCATTG : 7932

   95 : sLysLysCysGlyGlyHisLeuGlyHisValPheLysGlyGluGlyPheAsnThrProIleA :  115
        |  !!!.||||||!.!|||! !||||||||||||   ..!!!:|||     !.!!|||! !!
        sAlaAsnCysGlyAlaHisGlnGlyHisValPhe---AsnAspGly---ProAlaProThrG
 7931 : CGCGAATTGTGGGGCTCACCAGGGGCACGTGTTC---AACGACGGG---CCTGCTCCAACAG : 7875

  116 : spGlnArgHisCysValAsnSerIleSerLeuAsnPheLysPro :  129
         !!  |||  !|||:!!||||||   |||:!!   !!.:::|||
        lyLeuArgPheCysIleAsnSerAlaSerIleLeuLeuArgPro
 7874 : GTCTTCGCTTCTGCATCAATAGCGCGTCCATCTTATTACGTCCT : 7831

vulgar: scaffold_27 11 129 . gi|157434878|gb|AACB02000019.1| 8178 7830 - 200 M 94 282 G 1 0 M 3 9 G 1 0 M 19 57
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-02
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|157434878|gb|AACB02000019.1|	exonerate:protein2genome:local	gene	7831	8178	200	-	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation .
gi|157434878|gb|AACB02000019.1|	exonerate:protein2genome:local	cds	7831	8178	.	-	.	
gi|157434878|gb|AACB02000019.1|	exonerate:protein2genome:local	exon	7831	8178	.	-	.	insertions 0 ; deletions 2
gi|157434878|gb|AACB02000019.1|	exonerate:protein2genome:local	similarity	7831	8178	200	-	.	alignment_id 1 ; Query scaffold_27 ; Align 8179 12 282 ; Align 7897 107 9 ; Align 7888 111 57
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
