Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t purpureumCONTRAEntamoeba_invadens_fastasubseq_genomic.fa]
Hostname: [ws101141.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: gi|145686515|gb|AANW02001203.1|:subseq(1,2995) Entamoeba invadens IP1 gcontig_1105074713651, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 210
   Query range: 9 -> 129
  Target range: 638 -> 995

  10 : ArgValLysLeuSerProGluGlnPheArgValLeuArgGluLysGlyThrGluAlaProPheV :  31
       !:!  !||||||!!!|||  !|||!:!!:!|||  !!:!|||!..||||||||| !!||||||.
       LysSerLysLeuThrProLeuGlnTyrGlnValThrGlnGluSerGlyThrGluProProPheT
 639 : AAGAGTAAGTTGACACCTCTACAATATCAGGTGACGCAAGAAAGTGGAACGGAGCCTCCATTTA : 702

  32 : alGlyLysTyrThrAspAsnLysAspGluGlyLeuTyrGluCysAlaGlyCysGlyThrProLe :  52
       .!..!:!!|||  ! !!!.!   !!:!!:|||:!!|||!    !!.!! !   |||! !|||||
       hrAsnGluTyrAspHisThrPheGluAspGlyIleTyrValAspValValThrGlyLysProLe
 703 : CTAACGAGTATGACCATACCTTTGAAGACGGGATATACGTCGACGTCGTGACGGGGAAACCCCT : 765

  53 : uPheLysSerThrGlnLysPheHisSerGlyCysGlyTrpProSerPhePheAspSerLeuPro :  73
       ||||..!|||! !.!.|||||| !!||||||||||||||||||:!!|||  ! !  !!:!!! !
       uPheSerSerLysAspLysPheAspSerGlyCysGlyTrpProAlaPheThrLysProIleHis
 766 : CTTCTCGTCGAAAGACAAATTCGACTCGGGATGTGGGTGGCCTGCTTTCACTAAGCCTATCCAC : 828

  74 : AspAlaIleThrPheHisSerAspProSerIleProGlyArgProArgThrGluIleCysCysL :  95
         !  !  !  !!:!.!.!.!     !..!  !! !|||! !! !|||..!|||:!: !  !!.
       ProLeuSerLeuTyrGluLysThrAspGluSerHisGlyMetArgArgValGluValArgSerS
 829 : CCTCTTTCACTCTATGAGAAGACGGATGAGTCACATGGGATGCGTCGAGTCGAAGTGAGAAGTT : 894

  96 : ysLysCysGlyGlyHisLeuGlyHisValPheLysGlyGluGlyPheAsnThrProIleAspGl : 116
       .!!.. !!! !..!||||||||||||||||||:!!   !!:|||        !  !  !!  ! 
       erSerGlyAspSerHisLeuGlyHisValPheGlu---AspGlyProLeuGluMetGlyGlyLe
 895 : CGAGTGGTGACTCTCATCTCGGCCATGTCTTTGAA---GATGGGCCACTAGAAATGGGTGGACT : 954

 117 : nArgHisCysValAsnSerIleSerLeuAsnPheLysPro : 129
       !|||:!!|||:!!||||||  !||||||!..|||!  |||
       uArgTyrCysIleAsnSerAlaSerLeuArgPheIlePro
 955 : AAGGTATTGCATTAACTCGGCAAGCTTAAGATTCATTCCT : 995

vulgar: scaffold_27 9 129 . gi|145686515|gb|AANW02001203.1|:subseq(1,2995) 638 995 + 210 M 97 291 G 1 0 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-02-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|145686515|gb|AANW02001203.1|:subseq(1,2995)	exonerate:protein2genome:local	gene	639	995	210	+	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation .
gi|145686515|gb|AANW02001203.1|:subseq(1,2995)	exonerate:protein2genome:local	cds	639	995	.	+	.	
gi|145686515|gb|AANW02001203.1|:subseq(1,2995)	exonerate:protein2genome:local	exon	639	995	.	+	.	insertions 0 ; deletions 1
gi|145686515|gb|AANW02001203.1|:subseq(1,2995)	exonerate:protein2genome:local	similarity	639	995	210	+	.	alignment_id 1 ; Query scaffold_27 ; Align 639 10 291 ; Align 930 108 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
