Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t purpureumCONTRAEmiliania_huxleyi.fastafetch.scaffold_168.fa]
Hostname: [ws101090.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: scaffold_168
         Model: protein2genome:local
     Raw score: 247
   Query range: 4 -> 127
  Target range: 187809 -> 188433

      5 : AsnGluGlnGluTrpArgValLysLeuSerProGluGlnPheArgValLeuArgGluL :     24
          !:!|||   ||||||!:!  !:!!|||!:! !!:!!:!!!:!!.!|||||||||||||
          SerGluAlaGluTrpLysLysGlnLeuAsnAlaGlnGluTyrAsnValLeuArgGluL
 187810 : AGCGAGGCTGAGTGGAAGAAGCAACTTAACGCACAGGAATACAATGTACTTCGCGAAA : 187867

     25 : ysGlyThrGluAlaProPheValGlyLysTyrThrAsp<->AsnLysAspGluGlyLe :     42
          |||||||||||  ! !!  !..!|||:!!|||  ! !     !!    ! !  |||! 
          ysGlyThrGluArgAlaGlyThrGlyGluTyrAspLysPheTyrProLysAlaGlyHi
 187868 : AGGGCACAGAGCGCGCAGGCACAGGGGAGTACGATAAGTTCTACCCCAAGGCCGGCCA : 187924

     43 : uTyrGluCysAlaGlyCysGlyThrProLeuPheLysSerThrGlnLysPheHisSer :     61
          !!:!!  |||  !|||||||||  !||||||!:!!..:!!  !...|||||| ! |||
          sPheValCysArgGlyCysGlyLeuProLeuTyrSerAlaGluSerLysPheLysSer
 187925 : CTTTGTTTGCCGCGGCTGCGGTCTTCCGCTCTACAGTGCTGAGAGCAAGTTCAAGTCC : 187981

     62 : {Gl}  >>>> Target Intron 1 >>>>  {y}CysGlyTrpProSerPhePheA :     70
          {||}            189 bp           {|}||||||||||||:!!|||  ! 
          {Gl}++                         ++{y}CysGlyTrpProAlaPheAspA
 187982 : {GG}gt.........................ag{G}TGCGGCTGGCCGGCCTTCGACC : 188197

     71 : spSerLeuProAspAlaIleThrPheHisSerAspProSerIleProGlyArgProAr :     89
            !!!! !  !! !|||:!!  !  !.!.  !|||  !|||.!!   |||! !! !||
          rgCysTyrLysGlyAlaValArgThrGluValAspSerSerPhe---GlyMetArgAr
 188198 : GGTGCTACAAAGGCGCCGTCCGGACCGAAGTGGACAGCTCGTTT---GGTATGCGGCG : 188251

     90 : gThrGluIleCysCysLysLysCysGlyGlyHisLeuGlyHisValPheLys{G}  > :    107
          |..!||||||   |||!..!..|||||||||||||||||||||||||||:!!{|}   
          gValGluIleMetCysSerSerCysGlyGlyHisLeuGlyHisValPheGlu{G}+- 
 188252 : CGTGGAGATCATGTGCAGCAGCTGCGGCGGCCACCTCGGCCACGTCTTTGAA{G}gc. : 188308

    108 : >>> Target Intron 2 >>>>  {ly}GluGlyPheAsnThrProIleAspGlnA :    117
                   69 bp            {||}||| !!|||   |||! !! !:!!:!!|
                                  ++{ly}GluArgPhe---ThrGlnThrAsnGluA
 188309 : ........................ag{GC}GAGCGCTTC---ACGCAGACCAACGAGA : 188401

    118 : rgHisCysValAsnSerIleSerLeuAsnPhe :    127
          |||||||||||||||||:!!|||:!!..!|||
          rgHisCysValAsnSerValSerValArgPhe
 188402 : GGCATTGCGTCAATTCCGTTTCTGTGCGCTTC : 188433

vulgar: scaffold_27 4 127 . scaffold_168 187809 188433 + 247 M 32 96 G 0 3 M 25 75 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 22 66 G 1 0 M 21 63 S 0 1 5 0 2 I 0 65 3 0 2 S 1 2 M 3 9 G 1 0 M 16 48
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_168	exonerate:protein2genome:local	gene	187810	188433	247	+	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation +
scaffold_168	exonerate:protein2genome:local	cds	187810	187985	.	+	.	
scaffold_168	exonerate:protein2genome:local	exon	187810	187985	.	+	.	insertions 3 ; deletions 0
scaffold_168	exonerate:protein2genome:local	splice5	187986	187987	.	+	.	intron_id 1 ; splice_site "GT"
scaffold_168	exonerate:protein2genome:local	intron	187986	188174	.	+	.	intron_id 1
scaffold_168	exonerate:protein2genome:local	splice3	188173	188174	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_168	exonerate:protein2genome:local	cds	188175	188305	.	+	.	
scaffold_168	exonerate:protein2genome:local	exon	188175	188305	.	+	.	insertions 0 ; deletions 1
scaffold_168	exonerate:protein2genome:local	splice5	188306	188307	.	+	.	intron_id 2 ; splice_site "GC"
scaffold_168	exonerate:protein2genome:local	intron	188306	188374	.	+	.	intron_id 2
scaffold_168	exonerate:protein2genome:local	splice3	188373	188374	.	+	.	intron_id 1 ; splice_site "AG"
scaffold_168	exonerate:protein2genome:local	cds	188375	188433	.	+	.	
scaffold_168	exonerate:protein2genome:local	exon	188375	188433	.	+	.	insertions 0 ; deletions 1
scaffold_168	exonerate:protein2genome:local	similarity	187810	188433	247	+	.	alignment_id 1 ; Query scaffold_27 ; Align 187810 5 96 ; Align 187909 37 75 ; Align 188176 63 66 ; Align 188242 86 63 ; Align 188377 108 9 ; Align 188386 112 48
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
