Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t purpureumCONTRAEmiliania_huxleyi.fastafetch.scaffold_1635.fa]
Hostname: [ws101090.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: scaffold_1635
         Model: protein2genome:local
     Raw score: 247
   Query range: 4 -> 127
  Target range: 4106 -> 4730

    5 : AsnGluGlnGluTrpArgValLysLeuSerProGluGlnPheArgValLeuArgGluLysGl :   25
        !:!|||   ||||||!:!  !:!!|||!:! !!:!!:!!!:!!.!|||||||||||||||||
        SerGluAlaGluTrpLysLysGlnLeuAsnAlaGlnGluTyrAsnValLeuArgGluLysGl
 4107 : AGCGAGGCTGAGTGGAAGAAGCAACTTAACGCACAGGAATACAATGTACTTCGCGAAAAGGG : 4167

   26 : yThrGluAlaProPheValGlyLysTyrThrAsp<->AsnLysAspGluGlyLeuTyrGluC :   45
        |||||||  ! !!  !..!|||:!!|||  ! !     !!    ! !  |||! !!:!!  |
        yThrGluArgAlaGlyThrGlyGluTyrAspLysPheTyrProLysAlaGlyHisPheValC
 4168 : CACAGAGCGCGCAGGCACAGGGGAGTACGATAAGTTCTACCCCAAGGCCGGCCACTTTGTTT : 4230

   46 : ysAlaGlyCysGlyThrProLeuPheLysSerThrGlnLysPheHisSer{Gl}  >>>> T :   62
        ||  !|||||||||  !||||||!:!!..:!!  !...|||||| ! |||{||}        
        ysArgGlyCysGlyLeuProLeuTyrSerAlaGluSerLysPheLysSer{Gl}++      
 4231 : GCCGCGGCTGCGGTCTTCCGCTCTACAGTGCTGAGAGCAAGTTCAAGTCC{GG}gt...... : 4285

   63 : arget Intron 1 >>>>  {y}CysGlyTrpProSerPhePheAspSerLeuProAspAl :   75
            189 bp           {|}||||||||||||:!!|||  !   !!!! !  !! !||
                           ++{y}CysGlyTrpProAlaPheAspArgCysTyrLysGlyAl
 4286 : ...................ag{G}TGCGGCTGGCCGGCCTTCGACCGGTGCTACAAAGGCGC : 4509

   76 : aIleThrPheHisSerAspProSerIleProGlyArgProArgThrGluIleCysCysLysL :   96
        |:!!  !  !.!.  !|||  !|||.!!   |||! !! !|||..!||||||   |||!..!
        aValArgThrGluValAspSerSerPhe---GlyMetArgArgValGluIleMetCysSerS
 4510 : CGTCCGGACCGAAGTGGACAGCTCGTTT---GGTATGCGGCGCGTGGAGATCATGTGCAGCA : 4569

   97 : ysCysGlyGlyHisLeuGlyHisValPheLys{G}  >>>> Target Intron 2 >>>> :  107
        ..|||||||||||||||||||||||||||:!!{|}            69 bp          
        erCysGlyGlyHisLeuGlyHisValPheGlu{G}+-                         
 4570 : GCTGCGGCGGCCACCTCGGCCACGTCTTTGAA{G}gc......................... : 4605

  108 :   {ly}GluGlyPheAsnThrProIleAspGlnArgHisCysValAsnSerIleSerLeuAs :  126
          {||}||| !!|||   |||! !! !:!!:!!||||||||||||||||||:!!|||:!!..
        ++{ly}GluArgPhe---ThrGlnThrAsnGluArgHisCysValAsnSerValSerValAr
 4606 : ag{GC}GAGCGCTTC---ACGCAGACCAACGAGAGGCATTGCGTCAATTCCGTTTCTGTGCG : 4725

  127 : nPhe :  127
        !|||
        gPhe
 4726 : CTTC : 4730

vulgar: scaffold_27 4 127 . scaffold_1635 4106 4730 + 247 M 32 96 G 0 3 M 25 75 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 22 66 G 1 0 M 21 63 S 0 1 5 0 2 I 0 65 3 0 2 S 1 2 M 3 9 G 1 0 M 16 48
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_1635	exonerate:protein2genome:local	gene	4107	4730	247	+	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation +
scaffold_1635	exonerate:protein2genome:local	cds	4107	4282	.	+	.	
scaffold_1635	exonerate:protein2genome:local	exon	4107	4282	.	+	.	insertions 3 ; deletions 0
scaffold_1635	exonerate:protein2genome:local	splice5	4283	4284	.	+	.	intron_id 1 ; splice_site "GT"
scaffold_1635	exonerate:protein2genome:local	intron	4283	4471	.	+	.	intron_id 1
scaffold_1635	exonerate:protein2genome:local	splice3	4470	4471	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_1635	exonerate:protein2genome:local	cds	4472	4602	.	+	.	
scaffold_1635	exonerate:protein2genome:local	exon	4472	4602	.	+	.	insertions 0 ; deletions 1
scaffold_1635	exonerate:protein2genome:local	splice5	4603	4604	.	+	.	intron_id 2 ; splice_site "GC"
scaffold_1635	exonerate:protein2genome:local	intron	4603	4671	.	+	.	intron_id 2
scaffold_1635	exonerate:protein2genome:local	splice3	4670	4671	.	+	.	intron_id 1 ; splice_site "AG"
scaffold_1635	exonerate:protein2genome:local	cds	4672	4730	.	+	.	
scaffold_1635	exonerate:protein2genome:local	exon	4672	4730	.	+	.	insertions 0 ; deletions 1
scaffold_1635	exonerate:protein2genome:local	similarity	4107	4730	247	+	.	alignment_id 1 ; Query scaffold_27 ; Align 4107 5 96 ; Align 4206 37 75 ; Align 4473 63 66 ; Align 4539 86 63 ; Align 4674 108 9 ; Align 4683 112 48
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
