Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t purpureumCONTRAEmiliania_huxleyi.fastafetch.scaffold_153.fa --exhaustive yes]
Hostname: [ws101090.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: scaffold_153 [revcomp]
         Model: protein2genome:local
     Raw score: 201
   Query range: 4 -> 131
  Target range: 188784 -> 23009

      5 : AsnGluGlnGlu{Tr}  >>>> Target Intron 1 >>>>  {p}ArgValLysL :     13
          |||||||||   { !}          149550 bp          {!}|||! !:!!|
          AsnGluGlnPro{Ar}++                         ++{g}ArgGluGlnL
 188784 : aacgagcagccc{ag}gt.........................ag{G}CGGGAGCAGC :  39210

     14 : euSerProGluGlnPheArgValLeuArgGluLysGlyThrGluAlaProPheVal{G :     32
          |||||  !|||:!!!:!  !|||||||||:!!||||||||||||  !|||     !{|
          euSerAspGluGluTyrTyrValLeuArgGlnLysGlyThrGluTyrProGlySer{G
  39209 : TCTCGGACGAGGAGTACTACGTGCTGCGGCAAAAAGGGACCGAGTACCCTGGATCA{G :  39153

     33 : }  >>>> Target Intron 2 >>>>  {ly}LysTyrThrAsp<->AsnLysAsp :     39
          }            569 bp           {||}||||||  ! !     !!  ! ! 
          }++                         ++{ly}LysTyrAspLysPheTyrProLys
  39152 : }gt.........................ag{GC}AAGTACGACAAGTTCTACCCAAAG :  38560

     40 : GluGlyLeuTyrGluCysAla{Gl}  >>>> Target Intron 3 >>>>  {y}C :     48
          ! !|||! !!:!! !|||!.!{||}            73 bp            {|}|
          AlaGlyHisPheValCysGly{Gl}++                         ++{y}C
  38559 : GCAGGCCACTTTGTGTGCGGC{GG}gt.........................ag{G}T :  38460

     49 : ysGlyThrProLeuPheLysSerThrGlnLysPheHisSerGlyCysGlyTrpProSe :     67
          |||||.!!||||||!:!...:!!.!!  !|||||| !!||||||||||||||||||:!
          ysGlyAlaProLeuTyrSerAlaAlaAlaLysPheAspSerGlyCysGlyTrpProAl
  38459 : GCGGCGCGCCGCTCTACTCCGCTGCGGCAAAGTTCGACAGCGGGTGCGGCTGGCCTGC :  38403

     68 : rPhePheAspSerLeuPro{A}  >>>> Target Intron 4 >>>>  {sp}Ala :     75
          !|||  !   ! !:!!  !{!}            214 bp           { !}|||
          aPheAspArgIleValGlu{G}+-                         ++{ly}Ala
  38402 : CTTCGACCGGATCGTCGAA{G}gc.........................ag{GC}GCC :  38165

     76 : IleThrPheHisSerAspProSerIleProGlyArgProArgThrGluIleCysCysL :     95
          :!:..!   !!.!!!||| !!|||:!!   |||! !! !|||..!||||||  !||| 
          ValValThrGlnThrAspThrSerLeu---GlyMetArgArgValGluIleLeuCysG
  38164 : GTGGTGACGCAGACAGACACTTCCCTC---GGGATGCGGCGCGTCGAGATCCTCTGCG :  38108

     96 : ysLysCysGlyGlyHisLeuGlyHisValPheLys{G}  >>>> Target Intron :    107
            ..!|||||||||||||||||||||||||||:::{|}            205 bp  
          lySerCysGlyGlyHisLeuGlyHisValPheGlu{G}+-                  
  38107 : GCTCGTGTGGCGGCCACttgggccacgtcttcgag{g}gc.................. :  38069

    108 :  5 >>>>  {ly}GluGlyPheAsnThrProIleAspGlnArgHisCysValAsnSer :    122
                   {||}||| !!|||   |||! !! !:!!:!!||||||||||||||||||
                 ++{ly}GluArgPhe---ThrArgThrAsnGluArgHisCysValAsnSer
  38068 : .......ag{GC}GAGCGCTTC---ACCCGGACCAATGAGCGGCATTGCGTCAACTCG :  37825

    123 : IleSer  >>>> Target Intron 6 >>>>  LeuAsnPheLysProSerLys :    131
             |||           14786 bp          |||   |||  !|||!:!::!
          AlaSer++                         ++LeuProPheLeuProAsnArg
  37824 : GCGTCGgt.........................agCTTCCGTTTCTGCCTAATCGA :  23010

vulgar: scaffold_27 4 131 . scaffold_153 188784 23009 - 201 M 4 12 S 0 2 5 0 2 I 0 149546 3 0 2 S 1 1 M 22 66 S 0 1 5 0 2 I 0 565 3 0 2 S 1 2 M 4 12 G 0 3 M 10 30 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 26 78 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 10 30 G 1 0 M 21 63 S 0 1 5 0 2 I 0 201 3 0 2 S 1 2 M 3 9 G 1 0 M 13 39 5 0 2 I 0 14782 3 0 2 M 7 21
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_153	exonerate:protein2genome:local	gene	23010	188784	201	-	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation +
scaffold_153	exonerate:protein2genome:local	cds	188771	188784	.	-	.	
scaffold_153	exonerate:protein2genome:local	exon	188771	188784	.	-	.	insertions 0 ; deletions 0
scaffold_153	exonerate:protein2genome:local	splice5	188769	188770	.	-	.	intron_id 1 ; splice_site "gt"
scaffold_153	exonerate:protein2genome:local	intron	39221	188770	.	-	.	intron_id 1
scaffold_153	exonerate:protein2genome:local	splice3	39221	39222	.	-	.	intron_id 0 ; splice_site "AG"
scaffold_153	exonerate:protein2genome:local	cds	39153	39220	.	-	.	
scaffold_153	exonerate:protein2genome:local	exon	39153	39220	.	-	.	insertions 0 ; deletions 0
scaffold_153	exonerate:protein2genome:local	splice5	39151	39152	.	-	.	intron_id 2 ; splice_site "GT"
scaffold_153	exonerate:protein2genome:local	intron	38584	39152	.	-	.	intron_id 2
scaffold_153	exonerate:protein2genome:local	splice3	38584	38585	.	-	.	intron_id 1 ; splice_site "AG"
scaffold_153	exonerate:protein2genome:local	cds	38535	38583	.	-	.	
scaffold_153	exonerate:protein2genome:local	exon	38535	38583	.	-	.	insertions 3 ; deletions 0
scaffold_153	exonerate:protein2genome:local	splice5	38533	38534	.	-	.	intron_id 3 ; splice_site "GT"
scaffold_153	exonerate:protein2genome:local	intron	38462	38534	.	-	.	intron_id 3
scaffold_153	exonerate:protein2genome:local	splice3	38462	38463	.	-	.	intron_id 2 ; splice_site "AG"
scaffold_153	exonerate:protein2genome:local	cds	38382	38461	.	-	.	
scaffold_153	exonerate:protein2genome:local	exon	38382	38461	.	-	.	insertions 0 ; deletions 0
scaffold_153	exonerate:protein2genome:local	splice5	38380	38381	.	-	.	intron_id 4 ; splice_site "GC"
scaffold_153	exonerate:protein2genome:local	intron	38168	38381	.	-	.	intron_id 4
scaffold_153	exonerate:protein2genome:local	splice3	38168	38169	.	-	.	intron_id 3 ; splice_site "AG"
scaffold_153	exonerate:protein2genome:local	cds	38072	38167	.	-	.	
scaffold_153	exonerate:protein2genome:local	exon	38072	38167	.	-	.	insertions 0 ; deletions 1
scaffold_153	exonerate:protein2genome:local	splice5	38070	38071	.	-	.	intron_id 5 ; splice_site "gc"
scaffold_153	exonerate:protein2genome:local	intron	37867	38071	.	-	.	intron_id 5
scaffold_153	exonerate:protein2genome:local	splice3	37867	37868	.	-	.	intron_id 4 ; splice_site "AG"
scaffold_153	exonerate:protein2genome:local	cds	37817	37866	.	-	.	
scaffold_153	exonerate:protein2genome:local	exon	37817	37866	.	-	.	insertions 0 ; deletions 1
scaffold_153	exonerate:protein2genome:local	splice5	37815	37816	.	-	.	intron_id 6 ; splice_site "GT"
scaffold_153	exonerate:protein2genome:local	intron	23031	37816	.	-	.	intron_id 6
scaffold_153	exonerate:protein2genome:local	splice3	23031	23032	.	-	.	intron_id 5 ; splice_site "AG"
scaffold_153	exonerate:protein2genome:local	cds	23010	23030	.	-	.	
scaffold_153	exonerate:protein2genome:local	exon	23010	23030	.	-	.	insertions 0 ; deletions 0
scaffold_153	exonerate:protein2genome:local	similarity	23010	188784	201	-	.	alignment_id 1 ; Query scaffold_27 ; Align 188785 5 12 ; Align 39220 10 66 ; Align 38582 33 12 ; Align 38567 37 30 ; Align 38461 48 78 ; Align 38166 75 30 ; Align 38136 86 63 ; Align 37865 108 9 ; Align 37856 112 39 ; Align 23031 125 21
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
