Command line: [exonerate -m p2g --showtargetgff -q query_emiliana_scaffold144.fa -t purpureumCONTRAEmiliania_huxleyi.fastafetch.scaffold_144.fa]
Hostname: [ws101090.aulescm.upf.edu]

C4 Alignment:
------------
         Query:  Query_emiliana_Scaffold144_NCBI
        Target: scaffold_144 [revcomp]
         Model: protein2genome:local
     Raw score: 251
   Query range: 5 -> 92
  Target range: 244099 -> 243841

      6 : LeuThrAlaGluGluArgGlnArgAlaAlaGluGlyLeuThrAspPheGlnLysTyrV :     25
          |||      ||||||      ||||||||||||   |||||||||||||||:::   :
          LeuProLysGluGluValLeuArgAlaAlaGluLysLeuThrAspPheGlnArgAlaI
 244099 : CTGCCCAAGGAGGAGGTTCTCCGTGCGGCGGAGAAGCTGACCGACTTTCAGCGGGCCA : 244042

     26 : alThrLeuGluHisGlyThrGluArgAlaPheThrGlyLysThrValAsnGlyTyrTh :     44
          :::::|||:::   ...|||||||||:::|||||||||||||||||||||||||||..
          leSerLeuAspAlaAlaThrGluArgSerPheThrGlyLysThrValAsnGlyTyrAl
 244041 : TCTCTCTGGACGCTGCGACCGAGCGCTCCTTCACGGGCAAGACGGTAAACGGCTACGC : 243985

     45 : rHisAspAsnLysGlnArgGlyThrTyrValCysAlaLeuGlyGlyLeuProLeuPhe :     63
          .   |||   |||::::::||||||:::|||   ||||||...|||      ||||||
          aTrpAspValLysGluLysGlyThrTrpValGlyAlaLeuSerGlyLysAlaLeuPhe
 243984 : GTGGGACGTGAAGGAGAAGGGAACTTGGGTAGGTGCTCTCTCCGGCAAGGCGCTGTTC : 243928

     64 : SerSerAspThrLysPheAsnSerGlyThrGlyTrpProSerPhePheAlaProIleA :     83
          ...|||:::||||||::::::||||||||||||||||||||||||   ||||||::: 
          GluSerGluThrLysTyrAspSerGlyThrGlyTrpProSerPheSerAlaProVal-
 243927 : GAATCTGAGACCAAGTACGACAGCGGCACGGGCTGGCCCTCGTTCTCCGCGCCGGTG- : 243868

     84 : spProAlaHisIleValGluValValAsp :     92
            |||...   ::::::|||   :::|||
          --ProGlyGlyValIleGluArgLeuAsp
 243867 : --CCCGGTGGCGTGATTGAGCGTCTCGAC : 243842

vulgar:  5 92 . scaffold_144 244099 243841 - 251 M 77 231 G 1 0 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_144	exonerate:protein2genome:local	gene	243842	244099	251	-	.	gene_id 1 ; sequence  ; gene_orientation .
scaffold_144	exonerate:protein2genome:local	cds	243842	244099	.	-	.	
scaffold_144	exonerate:protein2genome:local	exon	243842	244099	.	-	.	insertions 0 ; deletions 1
scaffold_144	exonerate:protein2genome:local	similarity	243842	244099	251	-	.	alignment_id 1 ; Query  ; Align 244100 6 231 ; Align 243869 84 27
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query:  Query_emiliana_Scaffold144_NCBI
        Target: scaffold_144 [revcomp]
         Model: protein2genome:local
     Raw score: 183
   Query range: 81 -> 157
  Target range: 243847 -> 53876

     82 : IleAspProAlaHisIleValGluValValAspMetSerIleProTyrMetProArgV :    101
          :::||||||...   :::...:::...            :::            |||.
          LeuAspProGlyAspLeuAlaAspAlaArgArgAlaLeuMetMetGlyGlyIleArgT
 243847 : CTCGACCCAGGCGATCTTGCTGACGCGCGGCGGGCTCTGATGATGGGTGGGATTCGGA : 243790

    102 : alGluValLeuAspAlaArgSerGlyAlaHisLeuGlyHisValPheAspAspGlyPr :    120
          ..||||||:::||||||   |||||||||||||||||||||||||||:::||||||||
          hrGluValIleAspAlaAlaSerGlyAlaHisLeuGlyHisValPheAsnAspGlyPr
 243789 : CGGAGGTGATTGACGCCGCCTCGGGCGCGCATCTTGGGCATGTGTTCAACGACGGCCC : 243733

    121 : oAlaProThrGlyLysArgTyrCysIleAsnAlaAlaAlaLeuLysPheIleProAla :    139
          |   |||||||||||||||||||||:::||||||...|||:::   |||:::||||||
          oLysProThrGlyLysArgTyrCysMetAsnAlaGlyAlaMetAlaPheValProAla
 243732 : CAAGCCGACGGGCAAGCGCTACTGCATGAACGCGGGCGCCATGGCGTTTGTCCCTGCC : 243676

    140 : {Gl}  >>>> Target Intron 1 >>>>  {y}GluGluLeuProAlaGluSerA :    148
          {  }          189743 bp          { }||||||:::||||||||||||:
          {Ly}++                         +-{s}GluGluIleProAlaGluSerL
 243675 : {AA}gt.........................ac{A}GAAGAGATCCCCGCAGAGTCAA :  53906

    149 : rgProValAlaAlaGlnGluAlaGlyLys :    157
          ::         :::|||...   |||:::
          ysArgCysArgSerGlnHisHisGlyArg
  53905 : AACGTTGCCGCAGTCAGCATCACGGCCGT :  53877

vulgar:  81 157 . scaffold_144 243847 53876 - 183 M 58 174 S 0 2 5 0 2 I 0 189739 3 0 2 S 1 1 M 17 51
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_144	exonerate:protein2genome:local	gene	53877	243847	183	-	.	gene_id 2 ; sequence  ; gene_orientation +
scaffold_144	exonerate:protein2genome:local	cds	243672	243847	.	-	.	
scaffold_144	exonerate:protein2genome:local	exon	243672	243847	.	-	.	insertions 0 ; deletions 0
scaffold_144	exonerate:protein2genome:local	splice5	243670	243671	.	-	.	intron_id 1 ; splice_site "GT"
scaffold_144	exonerate:protein2genome:local	intron	53929	243671	.	-	.	intron_id 1
scaffold_144	exonerate:protein2genome:local	splice3	53929	53930	.	-	.	intron_id 0 ; splice_site "AC"
scaffold_144	exonerate:protein2genome:local	cds	53877	53928	.	-	.	
scaffold_144	exonerate:protein2genome:local	exon	53877	53928	.	-	.	insertions 0 ; deletions 0
scaffold_144	exonerate:protein2genome:local	similarity	53877	243847	183	-	.	alignment_id 2 ; Query  ; Align 243848 82 174 ; Align 53928 141 51
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
