Command line: [exonerate -m p2g --showtargetgff -q query_emiliana_scaffold1312.fa -t purpureumCONTRAEmiliania_huxleyi.fastafetch.scaffold_1312.fa]
Hostname: [ws101090.aulescm.upf.edu]

C4 Alignment:
------------
         Query:  Query_emiliana_scaffold_1312
        Target: scaffold_1312
         Model: protein2genome:local
     Raw score: 251
   Query range: 5 -> 92
  Target range: 4827 -> 5085

    6 : LeuThrAlaGluGluArgGlnArgAlaAlaGluGlyLeuThrAspPheGlnLysTyrValTh :   26
        |||      ||||||      ||||||||||||   |||||||||||||||:::   :::::
        LeuProLysGluGluValLeuArgAlaAlaGluLysLeuThrAspPheGlnArgAlaIleSe
 4828 : CTGCCCAAGGAGGAGGTTCTCCGTGCGGCGGAGAAGCTGACCGACTTTCAGCGGGCCATCTC : 4888

   27 : rLeuGluHisGlyThrGluArgAlaPheThrGlyLysThrValAsnGlyTyrThrHisAspA :   47
        :|||:::   ...|||||||||:::|||||||||||||||||||||||||||...   ||| 
        rLeuAspAlaAlaThrGluArgSerPheThrGlyLysThrValAsnGlyTyrAlaTrpAspV
 4889 : TCTGGACGCTGCGACCGAGCGCTCCTTCACGGGCAAGACGGTAAACGGCTACGCGTGGGACG : 4951

   48 : snLysGlnArgGlyThrTyrValCysAlaLeuGlyGlyLeuProLeuPheSerSerAspThr :   67
          |||::::::||||||:::|||   ||||||...|||      ||||||...|||:::|||
        alLysGluLysGlyThrTrpValGlyAlaLeuSerGlyLysAlaLeuPheGluSerGluThr
 4952 : TGAAGGAGAAGGGAACTTGGGTAGGTGCTCTCTCCGGCAAGGCGCTGTTCGAATCTGAGACC : 5011

   68 : LysPheAsnSerGlyThrGlyTrpProSerPhePheAlaProIleAspProAlaHisIleVa :   88
        |||::::::||||||||||||||||||||||||   ||||||:::   |||...   :::::
        LysTyrAspSerGlyThrGlyTrpProSerPheSerAlaProVal---ProGlyGlyValIl
 5012 : AAGTACGACAGCGGCACGGGCTGGCCCTCGTTCTCCGCGCCGGTG---CCCGGTGGCGTGAT : 5071

   89 : lGluValValAsp :   92
        :|||   :::|||
        eGluArgLeuAsp
 5072 : TGAGCGTCTCGAC : 5085

vulgar:  5 92 . scaffold_1312 4827 5085 + 251 M 77 231 G 1 0 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_1312	exonerate:protein2genome:local	gene	4828	5085	251	+	.	gene_id 1 ; sequence  ; gene_orientation .
scaffold_1312	exonerate:protein2genome:local	cds	4828	5085	.	+	.	
scaffold_1312	exonerate:protein2genome:local	exon	4828	5085	.	+	.	insertions 0 ; deletions 1
scaffold_1312	exonerate:protein2genome:local	similarity	4828	5085	251	+	.	alignment_id 1 ; Query  ; Align 4828 6 231 ; Align 5059 84 27
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query:  Query_emiliana_scaffold_1312
        Target: scaffold_1312
         Model: protein2genome:local
     Raw score: 174
   Query range: 81 -> 139
  Target range: 5079 -> 5253

   82 : IleAspProAlaHisIleValGluValValAspMetSerIleProTyrMetProArgValGl :  102
        :::||||||...   :::...:::...            :::            |||...||
        LeuAspProGlyAspLeuAlaAspAlaArgArgAlaLeuMetMetGlyGlyIleArgThrGl
 5080 : CTCGACCCAGGCGATCTTGCTGACGCGCGGCGGGCTCTGATGATGGGTGGGATTCGGACGGA : 5140

  103 : uValLeuAspAlaArgSerGlyAlaHisLeuGlyHisValPheAspAspGlyProAlaProT :  123
        ||||:::||||||   |||||||||||||||||||||||||||:::|||||||||   ||||
        uValIleAspAlaAlaSerGlyAlaHisLeuGlyHisValPheAsnAspGlyProLysProT
 5141 : GGTGATTGACGCCGCCTCGGGCGCGCATCTTGGGCATGTGTTCAACGACGGCCCCAAGCCGA : 5203

  124 : hrGlyLysArgTyrCysIleAsnAlaAlaAlaLeuLysPheIleProAla :  139
        |||||||||||||||||:::||||||...|||:::   |||:::||||||
        hrGlyLysArgTyrCysMetAsnAlaGlyAlaMetAlaPheValProAla
 5204 : CGGGCAAGCGCTACTGCATGAACGCGGGCGCCATGGCGTTTGTCCCTGCC : 5253

vulgar:  81 139 . scaffold_1312 5079 5253 + 174 M 58 174
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_1312	exonerate:protein2genome:local	gene	5080	5253	174	+	.	gene_id 2 ; sequence  ; gene_orientation .
scaffold_1312	exonerate:protein2genome:local	cds	5080	5253	.	+	.	
scaffold_1312	exonerate:protein2genome:local	exon	5080	5253	.	+	.	insertions 0 ; deletions 0
scaffold_1312	exonerate:protein2genome:local	similarity	5080	5253	174	+	.	alignment_id 2 ; Query  ; Align 5080 82 174
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
