Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t purpureumCONTRAEmiliania_huxleyi.fastafetch.scaffold_113.fa --exhaustive yes]
Hostname: [ws101094.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: scaffold_113
         Model: protein2genome:local
     Raw score: 138
   Query range: 7 -> 110
  Target range: 171545 -> 402719

      8 : GluTrpArgValLysLeuSerProGluGlnPheArg{V}  >>>> Target Intro :     20
          ..!||||||  !  !! !:!!||||||!:: !!|||{|}          140646 bp
          ArgTrpArgArgAlaArgAlaProGluArgValArg{V}++                 
 171546 : AGGTGGCGTCGAGCGCGGGCGCCGGAGCGCGTTAGG{G}gt................. : 171585

     21 : n 1 >>>>  {al}LeuArgGluLysGlyThrGluAlaProPheValGlyLysTyrTh :     35
                    {||}||||||        !|||||| !! !!!::..!..!  !  !!.
                  -+{al}LeuArgLeuGlyLeuThrGluProAlaTrpThrSerProLeuAs
 171586 : ........cg{TC}CTCCGGCTTGGCCTGACCGAGCCGGCGTGGACGTCGCCGCTCAA : 312273

     36 : rAspAsnLysAspGluGlyLeuTyrGluCysAlaGlyCysGlyThrProLeuPheLys :     54
          !  !..!  !   !!:|||  !!:!!  ||||||||||||.!!.!!  !|||||| ! 
          nPheGlyValArgAspGlyAlaPheAlaCysAlaGlyCysSerAlaIleLeuPheAsp
 312274 : CTTCGGCGTGAGGGACGGCGCCTTCGCCTGTGCTGGATGCAGTGCGATCCTCTTCGAC : 312330

     55 : SerThrGlnLysPheHisSerGlyCysGlyTrpProSerPhePheAspSerLeu{P}  :     73
          |||:!!   |||||| !!||||||   |||||||||||||||!::   !!!  !{ } 
          SerSerAlaLysPheAspSerGlyThrGlyTrpProSerPheTrpArgThrAla{A}-
 312331 : TCGTCCGCCAAGTTTGACTCTGGCACGGGCTGGCCCTCGTTCTGGAGGACTGCA{G}c : 312388

     74 :  >>>> Target Intron 2 >>>>  {ro}AspAlaIleThrPheHisSerAspPr :     82
                    65917 bp          { !}|||...:::|||   ...|||   ||
          -                         ++{sp}AspThrLeuThrAlaArgSerProPr
 312389 : g.........................ag{ac}gacacactcacggcgcgctcgccgcc : 378331

     83 : oSerIleProGlyArgProArg{T}  >>>> Target Intron 3 >>>>  {hr} :     90
          |||||||   ||||||      { }           24302 bp          { !}
          oSerIleAspGlyArgArgAla{G}++                         ++{ly}
 378332 : cagcatcgacgggaggcgggca{g}gt.........................ag{GC} : 402658

     91 : GluIleCysCysLysLysCysGlyGlyHisLeuGlyHisValPheLysGlyGluGlyP :    110
          ..!:!:..!            ||||||      |||   :!!  !..!|||!!:||||
          SerValAlaValGlyGlyGlyGlyGlyGlyGlyGlyGlyMetAlaSerGlyAspGlyP
 402659 : TCGGTGGCCGTcggcggcggcggcggcggcggcggcggcATGGCTTCGGGAGACGGCT : 402717

    111 : he :    110
          ||
          he
 402718 : TT : 402719

vulgar: scaffold_27 7 110 . scaffold_113 171545 402719 + 138 M 12 36 S 0 1 5 0 2 I 0 140642 3 0 2 S 1 2 M 52 156 S 0 1 5 0 2 I 0 65913 3 0 2 S 1 2 M 16 48 S 0 1 5 0 2 I 0 24298 3 0 2 S 1 2 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-12
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_113	exonerate:protein2genome:local	gene	171546	402719	138	+	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation +
scaffold_113	exonerate:protein2genome:local	cds	171546	171582	.	+	.	
scaffold_113	exonerate:protein2genome:local	exon	171546	171582	.	+	.	insertions 0 ; deletions 0
scaffold_113	exonerate:protein2genome:local	splice5	171583	171584	.	+	.	intron_id 1 ; splice_site "GT"
scaffold_113	exonerate:protein2genome:local	intron	171583	312228	.	+	.	intron_id 1
scaffold_113	exonerate:protein2genome:local	splice3	312227	312228	.	+	.	intron_id 0 ; splice_site "CG"
scaffold_113	exonerate:protein2genome:local	cds	312229	312387	.	+	.	
scaffold_113	exonerate:protein2genome:local	exon	312229	312387	.	+	.	insertions 0 ; deletions 0
scaffold_113	exonerate:protein2genome:local	splice5	312388	312389	.	+	.	intron_id 2 ; splice_site "CG"
scaffold_113	exonerate:protein2genome:local	intron	312388	378304	.	+	.	intron_id 2
scaffold_113	exonerate:protein2genome:local	splice3	378303	378304	.	+	.	intron_id 1 ; splice_site "ag"
scaffold_113	exonerate:protein2genome:local	cds	378305	378355	.	+	.	
scaffold_113	exonerate:protein2genome:local	exon	378305	378355	.	+	.	insertions 0 ; deletions 0
scaffold_113	exonerate:protein2genome:local	splice5	378356	378357	.	+	.	intron_id 3 ; splice_site "gt"
scaffold_113	exonerate:protein2genome:local	intron	378356	402657	.	+	.	intron_id 3
scaffold_113	exonerate:protein2genome:local	splice3	402656	402657	.	+	.	intron_id 2 ; splice_site "AG"
scaffold_113	exonerate:protein2genome:local	cds	402658	402719	.	+	.	
scaffold_113	exonerate:protein2genome:local	exon	402658	402719	.	+	.	insertions 0 ; deletions 0
scaffold_113	exonerate:protein2genome:local	similarity	171546	402719	138	+	.	alignment_id 1 ; Query scaffold_27 ; Align 171546 8 36 ; Align 312231 21 156 ; Align 378307 74 48 ; Align 402660 91 60
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
