Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t tenella_fastafetch.fa]
Hostname: [ws101092.aulescm.upf.edu]

C4 Alignment:
------------
         Query: Query_SelR.Dictyostelium_purpureum.1 scaffold_27 dpurpureum selr protein
        Target: pathogen_EIMER_contig_00029637 - eimer-4027d10.p1ka low_quality_removed
         Model: protein2genome:local
     Raw score: 198
   Query range: 12 -> 128
  Target range: 9195 -> 10309

    13 : LeuSerProGluGlnPheArgValLeuArgGluLysGlyThrGluAlaProPheVal{G} :    32
         ||| !!  !|||:!!!:!||||||||||||||||||!.!|||||| !! !!  !  !{|}
         LeuProGlyGluGluTyrArgValLeuArgGluLysAlaThrGluProAlaGlySer{G}
  9196 : CTCCCAGGAGAGGAATACAGAGTCCTGAGGGAGAAGGCCACAGAGCCCGCAGGCAGC{G} :  9253

    33 :   >>>> Target Intron 1 >>>>  {ly}LysTyrThrAsp<->AsnLysAspGlu :    40
                     187 bp           {||}:!!|||  ! !!    !!     !:!!
         +-                         ++{ly}GluTyrAspHisPheTyrProProLys
  9254 : gc.........................ag{GA}GAGTATGATCACTTCTACCCTCCTAAG :  9467

    41 : GlyLeuTyrGluCysAlaGlyCysGlyThrProLeuPheLysSerThrGlnLysPheHis :    60
         |||! !!:!!  |||  !||||||  !:!!|||||||||   :!!!:!...|||||| ! 
         GlyCysPheValCysArgGlyCysLeuSerProLeuPheProAlaSerSerLysPheLys
  9468 : GGGTGCTTTGTTTGCCGCGGATGCCTTTCCCCTCTTTTCCCCGCCAGCAGCAAATTCAAA :  9527

    61 : SerGlyCysGlyTrpProSerPhePheAspSerLeuPro{A}  >>>> Target Intr :    74
         ||||||||||||||||||:!!|||  ! !   !! !  !{!}            207 bp
         SerGlyCysGlyTrpProAlaPheAspLysValTyrLys{G}++                
  9528 : TCCGGCTGCGGCTGGCCAGCCTTTGACAAAGTTTACAAA{G}gt................ :  9572

    75 : on 2 >>>>  {sp}AlaIleThrPheHisSerAspProSerIleProGlyArgProArg :    89
                    { !}  !:!!! !  !     !|||! !|||     !|||! !  !|||
                  ++{ly}LysValLysAlaValLeuAspLeuSer---GlyGlyMetArgArg
  9573 : .........ag{GC}AAAGTTAAAGCTGTGCTAGACCTTAGT---GGGGGCATGAGGCGC :  9818

    90 : ThrGluIleCysCysLysLysCysGlyGlyHisLeuGlyHisValPheLysGlyGlu{Gl :   109
           !||||||  !|||!..   |||||||||||||||||||||||||||!  ||||||{||
         TrpGluIleIleCysSerAlaCysGlyGlyHisLeuGlyHisValPheThrGlyGlu{Gl
  9819 : TGGGAGATAATCTGCAGCGCCTGCGGCGGCCACTTGGGCCACGTGTTCACTGGCGAG{GG :  9878

   110 : }  >>>> Target Intron 3 >>>>  {y}PheAsnThrProIleAspGlnArgHis :   118
         }            375 bp           {|}|||   |||! !! !:!!:!!||||||
         }++                         ++{y}Phe---ThrGlnThrAsnGluArgHis
  9879 : }gt.........................ag{G}TTT---ACGCAGACCAACGAGCGGCAC : 10277

   119 : CysValAsnSerIleSerLeuAsnPheLys :   128
         ||||||||||||:!:|||:!!!!.!:!:!!
         CysValAsnSerLeuSerIleLysTyrGln
 10278 : TGCGTGAACTCCTTGTCCATAAAGTACCAA : 10309

vulgar: Query_SelR.Dictyostelium_purpureum.1 12 128 . pathogen_EIMER_contig_00029637 9195 10309 + 198 M 19 57 S 0 1 5 0 2 I 0 183 3 0 2 S 1 2 M 4 12 G 0 3 M 37 111 S 0 1 5 0 2 I 0 203 3 0 2 S 1 2 M 9 27 G 1 0 M 24 72 S 0 2 5 0 2 I 0 371 3 0 2 S 1 1 M 1 3 G 1 0 M 17 51
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	gene	9196	10309	198	+	.	gene_id 1 ; sequence Query_SelR.Dictyostelium_purpureum.1 ; gene_orientation +
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	cds	9196	9253	.	+	.	
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	exon	9196	9253	.	+	.	insertions 0 ; deletions 0
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	splice5	9254	9255	.	+	.	intron_id 1 ; splice_site "GC"
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	intron	9254	9440	.	+	.	intron_id 1
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	splice3	9439	9440	.	+	.	intron_id 0 ; splice_site "AG"
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	cds	9441	9569	.	+	.	
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	exon	9441	9569	.	+	.	insertions 3 ; deletions 0
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	splice5	9570	9571	.	+	.	intron_id 2 ; splice_site "GT"
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	intron	9570	9776	.	+	.	intron_id 2
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	splice3	9775	9776	.	+	.	intron_id 1 ; splice_site "AG"
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	cds	9777	9879	.	+	.	
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	exon	9777	9879	.	+	.	insertions 0 ; deletions 1
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	splice5	9880	9881	.	+	.	intron_id 3 ; splice_site "GT"
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	intron	9880	10254	.	+	.	intron_id 3
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	splice3	10253	10254	.	+	.	intron_id 2 ; splice_site "AG"
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	cds	10255	10309	.	+	.	
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	exon	10255	10309	.	+	.	insertions 0 ; deletions 1
pathogen_EIMER_contig_00029637	exonerate:protein2genome:local	similarity	9196	10309	198	+	.	alignment_id 1 ; Query Query_SelR.Dictyostelium_purpureum.1 ; Align 9196 13 57 ; Align 9443 33 12 ; Align 9458 37 111 ; Align 9779 75 27 ; Align 9806 85 72 ; Align 10256 110 3 ; Align 10259 112 51
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
