Command line: [exonerate -m p2g --showtargetgff -q query_dictyostelium_purpureum_SelR_aa.cisteina.fa -t Eterrapinae.purpureum.fastafetch.fa]
Hostname: [ws101092.aulescm.upf.edu]

C4 Alignment:
------------
         Query: scaffold_27 dpurpureum selr protein
        Target: terra177d01.q1k
         Model: protein2genome:local
     Raw score: 361
   Query range: 4 -> 128
  Target range: 210 -> 585

   5 : AsnGluGlnGluTrpArgValLysLeuSerProGluGlnPheArgValLeuArgGluLysGlyT :  26
       !:!|||:!!||||||!:!!.!!  |||||||||:!!||||||||||||||||||:!!:!!||||
       SerGluGluGluTrpLysAlaIleLeuSerProGlnGlnPheArgValLeuArgGlnGlnGlyT
 211 : AGTGAAGAAGAATGGAAAGCAATTCTTTCGCCACAACAATTCAGAGTCTTAAGACAACAAGGAA : 274

  27 : hrGluAlaProPheValGlyLysTyrThrAspAsn<-><->LysAspGluGlyLeuTyrGluCy :  45
       |||||||||||!:!..!|||:!!|||!.!..!!!.      ! ! !    |||:!!||||||||
       hrGluAlaProTyrThrGlyGluTyrAsnSerLysProAlaThrLysThrGlyValTyrGluCy
 275 : CAGAAGCACCTTATACCGGAGAATACAATTCTAAGCCTGCGACAAAAACTGGGGTGTATGAATG : 337

  46 : sAlaGlyCysGlyThrProLeuPheLysSerThrGlnLysPheHisSerGlyCysGlyTrpPro :  66
       |!.!|||||||||!.! !!|||!:!||||||  !  !|||||| !!|||..!||||||||||||
       sValGlyCysGlyAsnSerLeuTyrLysSerLeuThrLysPheAspSerAsnCysGlyTrpPro
 338 : TGTTGGATGTGGAAACTCGTTATATAAGTCGCTGACGAAGTTCGATTCCAATTGTGGGTGGCCT : 400

  67 : SerPhePheAspSerLeuProAspAlaIleThrPheHisSerAspProSerIleProGlyArgP :  88
       :!!|||!:!!!::!!:!!|||! !:!!:!!! !.!!! !!.!|||! !|||   ! !|||! ! 
       AlaPheTyrGluAlaIleProGlySerLeuLysIleLeuLysAspLeuSer---HisGlyMetV
 401 : GCGTTCTATGAAGCTATTCCAGGCTCACTAAAAATTCTTAAAGATCTGTCG---CATGGTATGG : 463

  89 : roArgThrGluIleCysCysLysLysCysGlyGlyHisLeuGlyHisValPheLysGlyGluGl : 109
        !|||  !|||!!: !!|||!!.||||||! !|||||||||||||||:!!|||!:!||||||||
       alArgGluGluMetArgCysAsnLysCysAspGlyHisLeuGlyHisIlePheArgGlyGluGl
 464 : TAAGGGAAGAAATGCGTTGTAATAAGTGTGATGGTCACTTAGGTCATATATTCAGAGGCGAAGG : 526

 110 : yPheAsnThrProIleAspGlnArgHisCysValAsnSerIleSerLeuAsnPheLys : 128
       |  !!!.!.!|||! !|||:!!||||||||||||||||||:!:!!!|||!!.||||||
       yHisLysAsnProThrAspGluArgHisCysValAsnSerValCysLeuLysPheLys
 527 : ACATAAAAACCCTACTGATGAAAGACACTGCGTTAATAGTGTGTGCTTGAAATTTAAA : 585

vulgar: scaffold_27 4 128 . terra177d01.q1k 210 585 + 361 M 33 99 G 0 6 M 46 138 G 1 0 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-02-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
terra177d01.q1k	exonerate:protein2genome:local	gene	211	585	361	+	.	gene_id 1 ; sequence scaffold_27 ; gene_orientation .
terra177d01.q1k	exonerate:protein2genome:local	cds	211	585	.	+	.	
terra177d01.q1k	exonerate:protein2genome:local	exon	211	585	.	+	.	insertions 6 ; deletions 1
terra177d01.q1k	exonerate:protein2genome:local	similarity	211	585	361	+	.	alignment_id 1 ; Query scaffold_27 ; Align 211 5 99 ; Align 316 38 138 ; Align 454 85 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
