TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= scaffold_27 dpurpureum selr protein
         (132 letters)

Database: genome.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQX01000112.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   1.5  
gb|AAQX01000530.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   2.0  
gb|AAQX01000106.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   2.6  
gb|AAQX01000552.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    26   3.5  
gb|AAQX01000285.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    26   3.5  
gb|AAQX01000382.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    26   4.5  
gb|AAQX01000029.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    26   4.5  
gb|AAQX01000458.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    25   5.9  
gb|AAQX01000279.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    25   5.9  
gb|AAQX01000170.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    25   5.9  
gb|AAQX01000050.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    25   5.9  
gb|AAQX01000438.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    25   7.7  
gb|AAQX01000423.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    25   7.7  
gb|AAQX01000016.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    25   7.7  

>gb|AAQX01000112.1| Phytophthora ramorum strain Pr102 Pramorum_Cont112, whole genome shotgun
              sequence
          Length = 222948

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 95     KKCGGHLGHVFKGEGFNTPIDQR 117
              ++ GGH G VFKG   + P++ R
Sbjct: 109894 RRVGGHRGSVFKGGSVHLPVELR 109962


>gb|AAQX01000530.1| Phytophthora ramorum strain Pr102 Pramorum_Cont530, whole genome shotgun
              sequence
          Length = 254074

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 19     RVLREKGTEAPFVGKYTDNKDEGLYECAGCGTPLFKSTQKFHSGCGW 65
              RV+RE+G   PF+ +     D G  E    G    ++ +   +G GW
Sbjct: 247435 RVIRERGRTCPFLRR*GGRADAGQAEGWRAGAAAPRALEVEDAGVGW 247575


>gb|AAQX01000106.1| Phytophthora ramorum strain Pr102 Pramorum_Cont106, whole genome
            shotgun sequence
          Length = 62391

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 87   RPRTEICCKKCGG-HLGHVFKGEGF 110
            RPR   CC+ C   HLGH F  EGF
Sbjct: 9596 RPR---CCQNC*TLHLGHPFHHEGF 9531


>gb|AAQX01000552.1| Phytophthora ramorum strain Pr102 Pramorum_Cont552, whole genome shotgun
              sequence
          Length = 199956

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +2

Query: 33     KYTDNKDEGLYECAGCGTPLFKSTQKFHSGCGWPSFFDSLPDAITF 78
              KYT +    L  C+ CG     STQ+ H+ C  P F    P+AI F
Sbjct: 193271 KYTASSSN-LLMCSLCGESSPISTQRRHAHCPPPFF----PEAILF 193393


>gb|AAQX01000285.1| Phytophthora ramorum strain Pr102 Pramorum_Cont285, whole genome
             shotgun sequence
          Length = 23878

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
 Frame = +3

Query: 40    EGLYECA---GCGTPLFKS-------TQKFHSGCGWPSFFDSLPDAITFHSDPSIPGRPR 89
             EG   CA   G  +PL++S       T     GCG P+F+ + P ++   ++P  P R  
Sbjct: 9963  EGWGPCATRTGVPSPLYRSMACGAFPTLDLQRGCGLPAFYRA-PSSVATPTNP--PSRAV 10133

Query: 90    TEIC 93
               +C
Sbjct: 10134 ISVC 10145


>gb|AAQX01000382.1| Phytophthora ramorum strain Pr102 Pramorum_Cont382, whole genome
             shotgun sequence
          Length = 61095

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 41    GLYECAGCGTPLFKSTQKFHSGCGWPSFFDSLPDAITF 78
             G Y C   G  L  S ++ H  C  PS+  SLPD   F
Sbjct: 48165 GKYICHYSGR*LTLSLRRCHDRCLGPSWETSLPDRNDF 48278


>gb|AAQX01000029.1| Phytophthora ramorum strain Pr102 Pramorum_Cont29, whole genome
            shotgun sequence
          Length = 112163

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -2

Query: 7    QEWRVKLSPEQFRVLREKGTEAPFVGKYTDNKDEGLYECAGCG 49
            + WR+  SP   R   ++ +  PF      +   G+  C  CG
Sbjct: 1495 RSWRLHWSPLVARAFIKRSSTFPFSSSSALSVSSGVSSCVACG 1367


>gb|AAQX01000458.1| Phytophthora ramorum strain Pr102 Pramorum_Cont458, whole genome shotgun
              sequence
          Length = 219070

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 65     WPSFFDSLPDAITFH 79
              +PSFF S P+A+TF+
Sbjct: 179429 YPSFFSSNPEALTFY 179473


>gb|AAQX01000279.1| Phytophthora ramorum strain Pr102 Pramorum_Cont279, whole genome
            shotgun sequence
          Length = 62633

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 24   KGTEAPFVGKYTDNKDEGLYECAGCGTPLFKSTQKFHSGCGWPS 67
            +G   P VG     +   L+  A CG P   S++   +GC W S
Sbjct: 7201 RGDGHPCVGAAGQQEHSHLHVRADCGHPGGLSSRS*GAGCRWQS 7070


>gb|AAQX01000170.1| Phytophthora ramorum strain Pr102 Pramorum_Cont170, whole genome
            shotgun sequence
          Length = 39891

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 61   SGCGWPSFFDSLPDAITFHSDPSIPGRPRTEICCKK 96
            S  GWP     LP + ++H   S   RPR   C ++
Sbjct: 7785 SRVGWPRRLPPLPSSGSWHPTHSGAPRPRGSRCSRR 7678


>gb|AAQX01000050.1| Phytophthora ramorum strain Pr102 Pramorum_Cont50, whole genome shotgun
              sequence
          Length = 556376

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 63     CGWPSFFDSLPDAITFHSDPSIPGRPRTEI 92
              CGWP  + SL  ++   S P++  R RT++
Sbjct: 204323 CGWPQTWPSLSRSLASQSSPTL--RMRTKL 204406


>gb|AAQX01000438.1| Phytophthora ramorum strain Pr102 Pramorum_Cont438, whole genome
             shotgun sequence
          Length = 107380

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 48    CGTPLFKSTQKFHSGCGWPSFFDSLPDAITFHSDPSIPGRPRTEICCKKCG 98
             C T    ST    S C + S  D  P     H+ P++P RPR +     CG
Sbjct: 83656 CSTTRLGSTP*VSSSCCYCSS-DPPP-----HAQPTLPPRPRPQQLSLSCG 83790


>gb|AAQX01000423.1| Phytophthora ramorum strain Pr102 Pramorum_Cont423, whole genome
            shotgun sequence
          Length = 77786

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 41   GLYECAGCGTPLFKSTQKFHSGCGW 65
            G   CAGCGT   + T    + CGW
Sbjct: 8087 GARSCAGCGTWCARRT----ASCGW 8149



 Score = 25.0 bits (53), Expect = 7.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 41   GLYECAGCGTPLFKSTQKFHSGCGW 65
            G   CAGCGT   + T    + CGW
Sbjct: 1181 GARSCAGCGTWCARRT----ASCGW 1119


>gb|AAQX01000016.1| Phytophthora ramorum strain Pr102 Pramorum_Cont16, whole genome shotgun
              sequence
          Length = 254036

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 41     GLYECAGCGTPLFKSTQKFHSGCGWP 66
              GL    GCG P   S+  F + CG P
Sbjct: 164946 GLVSGPGCGPPRTSSSTGFRATCGPP 164869



 Score = 25.0 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 41     GLYECAGCGTPLFKSTQKFHSGCGWP 66
              GL    GCG P   S+  F + CG P
Sbjct: 165144 GLVSGPGCGPPRTSSSTGFRATCGPP 165221


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:07 PM
  Number of letters in database: 14,903,514
  Number of sequences in database:  572
  
Lambda     K      H
   0.319    0.139    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,393,057
Number of Sequences: 572
Number of extensions: 62777
Number of successful extensions: 382
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 217
length of query: 132
length of database: 4,967,838
effective HSP length: 84
effective length of query: 48
effective length of database: 4,919,790
effective search space: 236149920
effective search space used: 236149920
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
