TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= scaffold_27 dpurpureum selr protein
         (132 letters)

Database: genome.fa 
           13 sequences; 8,173,701 total letters

Searching.............done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3 gconti...    27   1.6  
gb|AAXT01000006.1| Babesia bovis strain T2Bo chromosome 1 gconti...    26   2.1  
gb|AAXT01000005.1| Babesia bovis strain T2Bo chromosome 1 gconti...    25   3.5  
gb|AAXT01000008.1| Babesia bovis strain T2Bo chromosome 1 gconti...    25   4.6  
gb|AAXT01000002.1| Babesia bovis strain T2Bo chromosome 4 gconti...    24   7.9  

>gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3 gcontig_1104837696278, whole genome
               shotgun sequence
          Length = 2593320

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
 Frame = -2

Query: 54      KSTQKFHSGCGWPSFFDS--------LPDAITFHSDPSIPGRPRTEI---CCKKCGGHLG 102
               +ST+       WP F           +P  +T H  PS     R +I      +  GHL 
Sbjct: 2343377 RSTEATLDAYVWPRFVQKEHLWAEGLVPALVTLHGYPSKVYIKRGDIFSLAFDEEHGHLS 2343198

Query: 103     HVFKGEGFNTPI--DQRHCV 120
               H+F G  +N  I  D   CV
Sbjct: 2343197 HLFTGRLYNLKIGNDIERCV 2343138



 Score = 24.6 bits (52), Expect = 6.0
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
 Frame = -3

Query: 44      ECAGCGTPL-------FKSTQKFHSGC 63
               EC  CGTPL       F  +  FH  C
Sbjct: 2284855 ECISCGTPLHTSQFIVFPCSHAFHRAC 2284775



 Score = 24.3 bits (51), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 83      SIPGRPRTEICCKKCGGHLGHVFKGEG 109
               S+P R     CC+ C G L  +  G G
Sbjct: 1114946 SLPLRAPGTFCCRGCDGFLTGLVNGSG 1115026



 Score = 24.3 bits (51), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 91      EICCKKCGGHLGHVFKGEG 109
               E+C  +CG H G  F G G
Sbjct: 1305787 EVCSSECGTHCGIEFTG*G 1305843


>gb|AAXT01000006.1| Babesia bovis strain T2Bo chromosome 1 gcontig_1104837696622, whole
             genome shotgun sequence
          Length = 285379

 Score = 26.2 bits (56), Expect = 2.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 68    FFDSLPDAITFHSDPSIPGRPRTEICCKKC 97
             F  +  D +  +SDPS  G+  T+I  +KC
Sbjct: 53958 FLKAQDDYLDCYSDPSFSGKDGTDIQTRKC 54047


>gb|AAXT01000005.1| Babesia bovis strain T2Bo chromosome 1 gcontig_1104837696198, whole
              genome shotgun sequence
          Length = 821816

 Score = 25.4 bits (54), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 48     CGTPLFKSTQKFHSGCGWPS 67
              C  P+FKS     SG  WP+
Sbjct: 467276 CTKPVFKSQANISSGSSWPT 467335


>gb|AAXT01000008.1| Babesia bovis strain T2Bo chromosome 1 gcontig_1104837696634, whole
            genome shotgun sequence
          Length = 28266

 Score = 25.0 bits (53), Expect = 4.6
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = -1

Query: 65   WPSFFDSLPDAITFHSDPSIPGRPRTEICCKKCGGHLGHVFKGEGFNTPIDQRHCV 120
            +PS  D +   +  +     P +   E+C    G   G  FKG         RHC+
Sbjct: 4569 YPSIEDHMNKTVDHNGKEQGPHKKYPELCPVPMGWDNGKHFKGTSQYPMAPLRHCI 4402


>gb|AAXT01000002.1| Babesia bovis strain T2Bo chromosome 4 gcontig_1104837696308, whole
              genome shotgun sequence
          Length = 1797577

 Score = 24.3 bits (51), Expect = 7.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 41     GLYECAGCGTPLFKSTQKFHSGCGWPSFFDSL 72
              G +EC  C T +    Q + S  GW   F SL
Sbjct: 837070 GDFECLQCTTEVTSLDQNYTS*MGWRWAFGSL 837165


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:04 PM
  Number of letters in database: 8,173,701
  Number of sequences in database:  13
  
Lambda     K      H
   0.319    0.139    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,610,591
Number of Sequences: 13
Number of extensions: 27414
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 83
length of query: 132
length of database: 2,724,567
effective HSP length: 80
effective length of query: 52
effective length of database: 2,723,527
effective search space: 141623404
effective search space used: 141623404
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
