Command line: [exonerate -m p2g --showtargetgff -q queryHIBRIDA_dictyostelium_purpureum_SelR_aa (c?pia).cisteina.fa -t fastafetch_scaffold56_anophagefferens.fa]
Hostname: [ws101139.aulescm.upf.edu]

C4 Alignment:
------------
         Query: HIBRIDA_DPurpureum_SelR scaffold_27 dpurpureum selr protein
        Target: scaffold_56 [revcomp]
         Model: protein2genome:local
     Raw score: 309
   Query range: 4 -> 118
  Target range: 22920 -> 22572

     5 : AsnGluGlnGluTrpArgValLysLeuSerProGluGlnPheArgValLeuArgGluLys :    24
         ::!!!:.!.|||  !  !  !! !|||..! !!|||    ! |||  !||||||! ! ! 
         SerAspAspGluLeuAlaLysThrLeuAspAlaGluAlaValArgCysLeuArgAlaHis
 22920 : TCCGACGACGAGCTGGCGAAGACGCTCGACGCGGAGGCCGTGCGTTGTCTGCGCGCGCAC : 22863

    25 : GlyThrGluAlaProPheValGlyLysTyrThrAspAsnLys<-><-><->AspGluGly :    41
         ||||||||| !! !!  !..!|||:!!|||!.!! !  !:!!            ...|||
         GlyThrGluProAlaGlyThrGlyGluTyrAsnAlaPheGluProProGlyGlyArgGly
 22862 : GGCACGGAGCCCGCGGGCACGGGCGAGTACAACGCCTTCGAAccgccgggcgggcgcggc : 22803

    42 : LeuTyrGluCysAlaGlyCysGlyThrProLeuPheLysSerThrGlnLysPheHisSer :    61
            !:!!!:|||  !!.!||| !!  !||||||!:! ! :!!:!!!::||||||   :!!
         ArgPheAspCysArgAlaCysArgPheProLeuTyrHisAlaSerArgLysPhe---Ala
 22802 : cggTTCGACTGCCGCGCGTGCCGTTTTCCGCTGTATCACGCGTCGCGCAAGTTC---GCG : 22746

    62 : GlyCysGlyTrpProSerPhePheGlnCysPhePheThrGlyAspValAlaHisValGly :    81
         ! !   ||||||  !:!!|||  !||||||||||||||||||||||||||||||||||||
         AspGlnGlyTrpIleAlaPheAspGlnCysPhePheThrGlyAspValAlaHisValGly
 22745 : GACCAGGGGTGGATCGCGTTCGACCAGTGCTTCTTCACGGGCGACGTCGCGCACGTCGGG : 22686

    82 : LeuAlaAlaGlyAsnMetAspSerIleGluValHisCysSerAsnCysArgSerHisLeu :   101
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuAlaAlaGlyAsnMetAspSerIleGluValHisCysSerAsnCysArgSerHisLeu
 22685 : CTCGCCGCCGGCAACATGGACTCCATCGAGGTGCACTGCTCGAACTGTCGATCGCACCTC : 22626

   102 : GlyHisValPheThrAspGlyValSerGlyGluArgHisCysValAsnSer :   118
         |||||||||||||||||||||||||||||||||||||||!! :!!||||||
         GlyHisValPheThrAspGlyValSerGlyGluArgHis***LeuAsnSer
 22625 : GGCCACGTCTTCACGGACGGCGTCAGCGGCGAGCGGCACTGACTCAACTCG : 22573

vulgar: HIBRIDA_DPurpureum_SelR 4 118 . scaffold_56 22920 22572 - 309 M 34 102 G 0 9 M 21 63 G 1 0 M 58 174
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-03
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_56	exonerate:protein2genome:local	gene	22573	22920	309	-	.	gene_id 1 ; sequence HIBRIDA_DPurpureum_SelR ; gene_orientation .
scaffold_56	exonerate:protein2genome:local	cds	22573	22920	.	-	.	
scaffold_56	exonerate:protein2genome:local	exon	22573	22920	.	-	.	insertions 9 ; deletions 1
scaffold_56	exonerate:protein2genome:local	similarity	22573	22920	309	-	.	alignment_id 1 ; Query HIBRIDA_DPurpureum_SelR ; Align 22921 5 102 ; Align 22810 39 63 ; Align 22747 61 174
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
