Command line: [exonerate -m p2g --showtargetgff -q hibrid_MsrB_prediccio_blast.fa -t hibrid_MsrB_blast_fastasubseq.fa --exhaustive yes]
Hostname: [ws101138.aulescm.upf.edu]

C4 Alignment:
------------
         Query: Hibrid_MsrB_A.anophagefferens
        Target: scaffold_4:subseq(402413,4308)
         Model: protein2genome:local
     Raw score: 593
   Query range: 74 -> 177
  Target range: 1999 -> 2308

   75 : ArgPheLeuAspPheTrpAspArgGlyValTyrAlaCysAlaArgCysGluArgProLeuTy :   95
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        ArgPheLeuAspPheTrpAspArgGlyValTyrAlaCysAlaArgCysGluArgProLeuTy
 2000 : CGGTTCCTCGACTTCTGGGATCGAGGCGTGTACGCCTGCGCGCGCTGCGAGCGGCCGCTCTA : 2060

   96 : rAlaSerAspAspLysTrpSerGlyProCysLeuTrpProSerTrpArgArgAspLeuProG :  116
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        rAlaSerAspAspLysTrpSerGlyProCysLeuTrpProSerTrpArgArgAspLeuProG
 2061 : CGCGTCGGACGACAAGTGGAGCGGGCCCTGCCTCTGGCCGTCGTGGCGGCGGGATTTGCCCG : 2123

  117 : lyAlaAlaArgHisAlaProValGluGlyTyrAsnGlyTyrValValAspValHisGluLeu :  136
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        lyAlaAlaArgHisAlaProValGluGlyTyrAsnGlyTyrValValAspValHisGluLeu
 2124 : GCGCGGCGCGCCACGCGCCGGTCGAGGGCTACAACGGGTACGTCGTCGACGTCCACGAGCTC : 2183

  137 : TyrCysGlyGlyCysAspLeuPheLeuGlyHisAlaPheAlaAspAlaArgAspLysGlyAs :  157
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        TyrCysGlyGlyCysAspLeuPheLeuGlyHisAlaPheAlaAspAlaArgAspLysGlyAs
 2184 : TACTGCGGCGGCTGCGACCTGTTCCTGGGCCACGCCTTCGCGGACGCGCGGGACAAGGGCGA : 2246

  158 : pAlaHisProAspAlaArgTrpArgHis***LeuLeuSerLeuSerLeuGluPheValPro :  177
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        pAlaHisProAspAlaArgTrpArgHis***LeuLeuSerLeuSerLeuGluPheValPro
 2247 : CGCGCACCCGGACGCGCGCTGGAGGCACTGACTCCTCTCGCTGTCCCTCGAGTTCGTCCCC : 2308

vulgar: Hibrid_MsrB_A.anophagefferens 74 177 . scaffold_4:subseq(402413,4308) 1999 2308 + 593 M 103 309
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_4:subseq(402413,4308)	exonerate:protein2genome:local	gene	2000	2308	593	+	.	gene_id 1 ; sequence Hibrid_MsrB_A.anophagefferens ; gene_orientation .
scaffold_4:subseq(402413,4308)	exonerate:protein2genome:local	cds	2000	2308	.	+	.	
scaffold_4:subseq(402413,4308)	exonerate:protein2genome:local	exon	2000	2308	.	+	.	insertions 0 ; deletions 0
scaffold_4:subseq(402413,4308)	exonerate:protein2genome:local	similarity	2000	2308	593	+	.	alignment_id 1 ; Query Hibrid_MsrB_A.anophagefferens ; Align 2000 75 309
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
