TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome ...   454   e-128
gb|AAFD02000015.1| Thalassiosira pseudonana CCMP1335 chromosome ...   229   4e-60
gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335 chromosome ...   219   3e-57
gb|AAFD02000029.1| Thalassiosira pseudonana CCMP1335 chromosome ...   121   1e-27
gb|AAFD02000016.1| Thalassiosira pseudonana CCMP1335 chromosome ...    70   4e-12
gb|AAFD02000006.1| Thalassiosira pseudonana CCMP1335 chromosome ...    68   2e-11
gb|AAFD02000013.1| Thalassiosira pseudonana CCMP1335 chromosome ...    32   1.0  
gb|AAFD02000030.1| Thalassiosira pseudonana CCMP1335 chromosome ...    29   8.7  

>gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont4, whole
               genome shotgun sequence
          Length = 2234390

 Score =  454 bits (1168), Expect = e-128
 Identities = 254/505 (50%), Positives = 315/505 (62%), Gaps = 16/505 (3%)
 Frame = -2

Query: 11      YDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 70
               Y+YDL+++                   V VLD+V P+P G+ WGLGGTCVNVGCIPKKLM
Sbjct: 2114836 YEYDLLVLGGGSGGLAASKEAAAHGARVAVLDYVKPSPAGSTWGLGGTCVNVGCIPKKLM 2114657

Query: 71      HQAALLG-QALQDSRNYGWKVEET--------------VKHDWDRMIEAVQNHIGSLNWG 115
               H AALL  Q   D  +YG  V E+                H W  +   VQNHI  LN+ 
Sbjct: 2114656 HTAALLNYQQKVDQPHYGINVSESQTEEWMGMSQDNADAPHSWGILKNNVQNHIRGLNFK 2114477

Query: 116     YRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKE 175
               YRV LREK+V Y N  G+F   H ++  + KG     +A RFLIA G RP  L   G  E
Sbjct: 2114476 YRVDLREKEVTYLNMLGKFKDAHTVETVDKKGNVGSITASRFLIAVGGRPSPLDCEGG-E 2114300

Query: 176     YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANK 235
                 ISSDD+FSL   PGK L VGASY++LECAGFL GIG DVTV VRSILLRGFD++ A+ 
Sbjct: 2114299 LAISSDDVFSLENDPGKVLCVGASYISLECAGFLKGIGKDVTVAVRSILLRGFDRECADL 2114120

Query: 236     IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA 295
               IGEHM   GI F  + VP K+ + E G     R+    +N +  +E EY+TV+ AIGR  
Sbjct: 2114119 IGEHMRHEGIVFKEEVVPKKLVKTEGG-----RIAVTFSNGD--VE-EYDTVLAAIGRTG 2113964

Query: 296     CTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQ 355
                T K+GLE VG+ +N K  KIP    EQT  P IY IGD+++   ELTPVAI AG++L++
Sbjct: 2113963 DTSKLGLENVGIDVNPKNAKIPAK-LEQTCTPNIYVIGDVMDGCPELTPVAIHAGKMLSR 2113787

Query: 356     RLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI-P 414
               RL+AGST   DY NV TTVFTPLEYG  G SE+ A+ +FG+EN+EVYH YF PLEW++ P
Sbjct: 2113786 RLFAGSTAPMDYRNVCTTVFTPLEYGTVGYSEDDAIAEFGKENVEVYHKYFIPLEWSLSP 2113607

Query: 415     SRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPV 474
               SR  ++ + K I   K   +V+G H LGPNAGEV QGF  A+K G   + +  T+GIHP 
Sbjct: 2113606 SRSESQGFCKAIV-YKATRKVLGLHYLGPNAGEVMQGFGTAMKLGCKFEDITETVGIHPT 2113430

Query: 475     CAEVFTTLSVTKRSGASILQAGCXG 499
                AE  TTLS+TK SGA    +GC G
Sbjct: 2113429 TAEELTTLSITKASGADAKASGC*G 2113355


>gb|AAFD02000015.1| Thalassiosira pseudonana CCMP1335 chromosome 11a THAPSchr_11a_Cont15,
              whole genome shotgun sequence
          Length = 761890

 Score =  229 bits (583), Expect = 4e-60
 Identities = 156/464 (33%), Positives = 234/464 (50%), Gaps = 44/464 (9%)
 Frame = -1

Query: 63     GCIPKKLMHQAALLGQALQDSRNYGWKVEET--VKHDWDRMIEAVQNHIGSLNWGYRVAL 120
              GC+PKK+M+ AA + + L D  +YG+   ++  +  DW  +  +   +I  LN  Y   +
Sbjct: 266167 GCVPKKIMYNAATISETLHDMHHYGFSGYDSGAISFDWGYIKRSRDVYIQRLNGIYDCNM 265988

Query: 121    REKKVVYENAYGQFIGPHR------IKATNNKGKEKIYSAERFLIATGERPRY-LGIPGD 173
                  V                    +  T+NK  E+ Y A+  L+ATG  P    G  G 
Sbjct: 265987 INSNVTRLIGMASLTKSESGGVDVMVSRTSNKPSER-YRAKHILLATGGYPTMPSGTDGS 265811

Query: 174    -KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQD 231
                +Y ISSD  F L   P K +VVGA Y+A+E AG L  +G + +++VR +  LR FD+ 
Sbjct: 265810 VSKYAISSDGFFELDTLPRKAVVVGAGYIAVELAGILQALGSETSLVVRKNSALRQFDEM 265631

Query: 232    MANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAI 291
              ++  + E ME  GI   R    +    +      +  V+    N+ E+I+   + V+LA 
Sbjct: 265630 LSKTLEEEMERQGIDIYRNTEGVSHISLNEANGTKTVVL----NNGEVIDN-VDVVILAA 265466

Query: 292    GRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPV------ 345
              GR     K+ LE  GV + +K G + V +  +TNVP +YA+GD+  + VELTP+      
Sbjct: 265465 GRSPSVEKLNLEETGV-VQKKGGYVAVNEYSETNVPGLYAVGDVCGN-VELTPMGEFALN 265292

Query: 346    ---------------------AIQAGRLLAQRLYAGST---VKCDYENVPTTVFTPLEYG 381
                                   AI AGR LA RL+   +    K  Y+NVPT +F+    G
Sbjct: 265291 QSMIFLYDCLFAH*HLFDDTTAIAAGRRLADRLFGSPSFHNAKVSYDNVPTVIFSHPPIG 265112

Query: 382    ACGLSEEKAVEKFGEENIEVYHSYFWPLE---WTIPSRDNNKCYAKIICNTKDNERVVGF 438
                GL+EE+A++K+G++N++VY S F  L+   W + + +  K   K++C    NE VVG 
Sbjct: 265111 TIGLTEEQAIQKYGDDNVKVYRSTFSNLQYGIWKVDASEKPKTSMKLVC-AGINELVVGL 264935

Query: 439    HVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
              HV+G  A E+ QGF  A+K G TK   DSTI IHP  +E F T+
Sbjct: 264934 HVIGMGADEMLQGFGIAMKMGATKSDFDSTIAIHPTASEEFVTM 264803



 Score =  104 bits (260), Expect = 1e-22
 Identities = 79/307 (25%), Positives = 145/307 (47%), Gaps = 5/307 (1%)
 Frame = +2

Query: 178    ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKI 236
              + S     +   P K  V+G   + LE     + +G +VTV+     L    DQ++  K 
Sbjct: 690719 VDSTGALEISKIPTKMAVIGGGVIGLEMGSVWSRLGTEVTVIEFMDRLCPAMDQELTKKF 690898

Query: 237    GEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDAC 296
                 +++ G KF  +   +K E +       + +  + +   E     Y+ V++A GR   
Sbjct: 690899 QTTLKKQGFKFKLKTKVVKSEVVG----DEVAITTEPSKGGEQTTENYDVVLVATGRRPY 691066

Query: 297    TRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQR 356
              T  +GLE +G++  +K G+I V    +T VP IYAIGD ++  + L   A + G + A  
Sbjct: 691067 TEGLGLENLGIQ-TDKLGRIQVDSHFRTAVPSIYAIGDCIDGPM-LAHKAEEEG-IAAVE 691237

Query: 357    LYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR 416
                AG     +Y+ +P  ++T  E  + G +EE+      E N+  ++   +P      +R
Sbjct: 691238 TIAGFAGHVNYDAIPGVIYTFPEVASVGKTEEE----LKEANV-AFNKGSFPFAANSRAR 691402

Query: 417    ----DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIH 472
                   N++ + KI+ + K  ++++G H++GPNAGE+       ++ G + + +  T   H
Sbjct: 691403 ANATGNSEGFVKILTD-KATDKILGIHIMGPNAGEMIAEGVLGMEYGASAEDVARTCHAH 691579

Query: 473    PVCAEVF 479
              P  +E F
Sbjct: 691580 PTLSEAF 691600



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
 Frame = +3

Query: 52     RWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEE--TVKHDWDRMIEAVQNH 108
              R  LGGTC+NVGCIP K L+  +     A     ++G  +     V  D  +M++A    
Sbjct: 690162 RGSLGGTCLNVGCIPSKALLQSSHHFHDAKHHFADHGISMGNGGEVTMDVGKMLDAKAQT 690341

Query: 109    IGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGE 163
              +  L  G     ++ KV Y    G   G   ++   N+G  +   A+  +IATGE
Sbjct: 690342 VKGLTGGIEHLFKKHKVEYFKGRGTLKGVDGVEVQLNEGGVESLEAKNIIIATGE 690506


>gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335 chromosome 20 THAPSchr_20_Cont36,
             whole genome shotgun sequence
          Length = 621618

 Score =  219 bits (558), Expect = 3e-57
 Identities = 163/455 (35%), Positives = 226/455 (49%), Gaps = 33/455 (7%)
 Frame = +1

Query: 61    NVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE----------------- 103
             N GC+PKKLM  A+     +++   YGWK       DW   +E                 
Sbjct: 46297 NTGCVPKKLMVFASRYPSEIKEMAGYGWKGATEGTFDWKVFLENKNKVR*LAVCLLCFTC 46476

Query: 104   ------------AVQNHIGSLNWGY-RVALREKKVVYENAYGQFIGPHRIKA-TNNKGKE 149
                         ++   I  LN  Y    L+   V    A G   GP+ I   T   G+ 
Sbjct: 46477 AYSN*HSSRNDQSLSQEITRLNNVYNNFVLKNAGVEVIEATGSLSGPNSISVHTTATGET 46656

Query: 150   KIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFL 209
                +A+  +IA G  P    IPG  E+ I+S+++F L   P + +VVG  ++ALE A  +
Sbjct: 46657 STLTAKHIIIAVGGWPFKPDIPG-IEHAITSNEIFYLEEQPKRMVVVGGGFIALEFASIM 46833

Query: 210   AGIGLDVTVMVR-SILLRGFDQDMANKIGEHME-EHGIKFIRQFVPIKVEQIEAGTPGRL 267
              G+G DVT+M R  + LRGFD DM   + E ME   GI       P ++ + E G+   L
Sbjct: 46834 DGLGTDVTLMYRGDMFLRGFDGDMRQHLKEEMEGNSGIDLQFNTDPKEIIKQEDGS---L 47004

Query: 268   RVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVP 327
             +VV Q+ N     E E + V+ A GR      + LE+ GVK   +   IPV +  QTNV 
Sbjct: 47005 KVVDQNGN-----EVECDAVLYATGRKGKIEGLNLESAGVK--TEGSFIPVNEYSQTNVE 47163

Query: 328   YIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSE 387
              IYA+GDI  +++ LTPVA+  G  LA  L+ G     D+E V +TVFT  E G  G +E
Sbjct: 47164 SIYAVGDI-TNRIALTPVALMEGHRLADTLFGGKDRPVDHEFVASTVFTTPEIGTVGYTE 47340

Query: 388   EKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGE 447
             E A  KFG+  I+VY + F  ++ + P  +    + K+I  TK  +RVVG HV    AGE
Sbjct: 47341 EDAAAKFGD--IDVYKNRFRAMKHSFPQSETYSLF-KLIVETK-TQRVVGCHVATDGAGE 47508

Query: 448   VTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
             + QG A A+K G TK   D+TIGIHP  AE   T+
Sbjct: 47509 MVQGVAIAIKMGATKDDFDNTIGIHPTSAEELVTM 47613


>gb|AAFD02000029.1| Thalassiosira pseudonana CCMP1335 chromosome 17 THAPSchr_17_Cont29, whole
              genome shotgun sequence
          Length = 659924

 Score =  121 bits (304), Expect = 1e-27
 Identities = 112/458 (24%), Positives = 200/458 (43%), Gaps = 36/458 (7%)
 Frame = -3

Query: 56     GGTCVNVGCIPKKLMHQAALL----GQALQDSRNYGWKVEETVKHDWDRMIEA---VQNH 108
              GG C+N GC+P K + + A L     +A + +  YG           D   ++   V+ H
Sbjct: 279975 GGDCLNAGCVPSKALLRCAKLIREARKAAESNNGYGVSFRRKSPDGSDTANDSSLEVEVH 279796

Query: 109    IGSLNWGYRVALREKKVVYENAY--------------GQFIGPHRIKATNNKGK-----E 149
              +       R+ +   K+   + +              G F  P  I+   +  +      
Sbjct: 279795 VDFPQIMQRMRMLRSKIAPVDGHERGASLGVQTFQGKGVFTSPSTIEVVEHGKRLGDPFN 279616

Query: 150    KIYSAERFLIATGERPRY-LGIPGDKEYCISSD-DLFSLPYCPGKTLVVGASYVALECAG 207
                 S  + +IATG RP     I G K+   +++  LF+L   P + +++G+  VALE A 
Sbjct: 279615 PQLSFRKAVIATGGRPTVPTDIVGLKDAPYTTNLGLFNLQRLPERMVILGSGVVALEMAQ 279436

Query: 208    FLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRL 267
                A  G  VTV+ R+ LL   D D A  +   +EE G++F+      KV  I   + G L
Sbjct: 279435 AFAIFGTKVTVLERTRLLSKGDDDAAEALRATLEEDGVEFLSGVSVEKVATIRPPSDGEL 279256

Query: 268    RVVAQSTNSEEIIEG---EYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT 324
               +++ S   +E  +    E   +++AIGR A  + IGLE+  ++ +   G I     +  
Sbjct: 279255 PLMSVSLTHKESTDPVMLECECLLVAIGRTANVQSIGLESANIQYHHSNGIIINDLAQSI 279076

Query: 325    NVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACG 384
              + P +YA+GD + +   LT V+ +  +++ Q        K     +P  ++T  EY   G
Sbjct: 279075 SNPNVYAVGDCVANVPRLTHVSGEMAKVVVQNALFDGEWKLSSFIIPAVMYTEPEYAVVG 278896

Query: 385    --LSEEK---AVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFH 439
                +S ++    V    ++ ++VY +     +  I    +   + KI+C  K   ++VG  
Sbjct: 278895 KVISVDENGYIVPTIPDDEVDVYKADLKHNDRAILDSSDTNGFVKILCK-KGTGKIVGCT 278719

Query: 440    VLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 477
              ++   AGE+    + A+K G+  + L   I  +P   E
Sbjct: 278718 IVSSRAGEIVNEVSLAMKHGIGLEGLGRNIHSYPTLGE 278605


>gb|AAFD02000016.1| Thalassiosira pseudonana CCMP1335 chromosome 11b THAPSchr_11b_Cont16,
             whole genome shotgun sequence
          Length = 82843

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 89/394 (22%), Positives = 158/394 (40%), Gaps = 68/394 (17%)
 Frame = +3

Query: 153   SAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAG 211
             S++  ++A G  P    G+  D++   +SD    L   P    ++G+ Y+ LE +     
Sbjct: 19917 SSQDIILAPGSIPFVPPGVTVDEKTVYTSDGALKLQSVPEWVAIIGSGYIGLEFSDVYTA 20096

Query: 212   IGLDVT-VMVRSILLRGFDQDMANKIGEHM-EEHGIKF------------IRQFVPIKVE 257
             +G +VT +     ++  FD+++A +    +  +  I +            I    P+ ++
Sbjct: 20097 LGSEVTFIEALPNIMPTFDREIAKQAERLLIRDRAIDYRTGVFASEVTPGIPGVKPVTIK 20276

Query: 258   QIEAGTPGRLRVVAQST-------------------------NSEEIIEG---------- 282
              I+A T   +  V   T                          S  II            
Sbjct: 20277 MIDANTK*VV*FVVLLTLRRWK**CILLHCRTTVYCCSLIIHTSSHIISPFHIPSLREHV 20456

Query: 283   ---EYNTVMLAIGRDACTRKIGLETVGVK-------INEKTGKIPVTDEEQTNVPYIYAI 332
                E +  M+A GR   T+ +GLE  G++       +NEK  ++    E+   VP ++ I
Sbjct: 20457 ETLEVDAAMVATGRVPNTKDMGLEEAGIETQRGFIAVNEKM-QVLTKHEDGEVVPNVWCI 20633

Query: 333   GDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVE 392
             GD    K+ L   A   G    + +  G     +++ +P   FT  E    G +EE+A+E
Sbjct: 20634 GDA-NGKMMLAHAASAQGISAIENI-CGRDHAVNHDAIPAACFTHPEIAMVGPTEEQAIE 20807

Query: 393   KFGEENIEVYHSYFWPLEWTIPS-RDNNKCYAKIICN-------TKDNERVVGFHVLGPN 444
             +  +E         W L  +  S R N+K  A++  N        K+  +VV  H++G +
Sbjct: 20808 RAEKEG--------WTLGKSQGSFRANSKALAELEGNGIAKVLYNKETGKVVAVHIIGIH 20963

Query: 445   AGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 478
             A ++ Q  A A+  G T ++L   +  HP   EV
Sbjct: 20964 AADLIQECANAVAAGTTVQELSMMVHTHPTLCEV 21065



 Score = 32.3 bits (72), Expect = 0.79
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
 Frame = +3

Query: 55    LGGTCVNVGCIPKKLMHQAALLGQALQDS---RNYGWKVE---ETVKHD 97
             +GGTCVN GC+P K +  A+   + +Q+      +G  VE   E++K+D
Sbjct: 19320 VGGTCVNRGCVPSKALLAASGRVREMQNEGHLSEFGITVEGGKESIKYD 19466


>gb|AAFD02000006.1| Thalassiosira pseudonana CCMP1335 chromosome 4 THAPSchr_4_Cont6, whole
              genome shotgun sequence
          Length = 1267202

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 13/230 (5%)
 Frame = -1

Query: 153    SAERFLIATGERP-RYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAG 211
              S+++ L+ATG  P R  GIP D +    SD + +L   P    + G+  +A+E A     
Sbjct: 762776 SSDKILLATGSTPFRPGGIPFDGKRVFDSDSINTLSRLPKSVAITGSGIIAIEFAKIFKN 762597

Query: 212    IGLDVTVMVRSILLR------GFDQDMANKIGEHMEEHGIKFIR--QFVPIKVEQIEAGT 263
              +G DVT+++R  + R      G D+D+A  +   +   GIK  R  Q     V +     
Sbjct: 762596 LGSDVTLIIRDNIPRNALMKIGLDKDIAATLVADLVRSGIKIERGAQVKKFTVPRDNDKA 762417

Query: 264    PGRLRVVAQSTN---SEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTD 320
              P  L + A+      S EI   + +  + A+GR   T  + L   G+K ++  G    +D
Sbjct: 762416 PMVLELEAKGGGERPSGEITTLKCDIYLAAVGRKPNTMNLNLAAAGIKTDQYGGIAVDSD 762237

Query: 321    EEQTNV-PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYEN 369
                 T     +YA GD+L  +  L    +  G    +R++    VK D ++
Sbjct: 762236 LRSTATGGNVYAAGDVL-GRPFLASTGMAQGFAAIRRMFRDDIVKEDADD 762090


>gb|AAFD02000013.1| Thalassiosira pseudonana CCMP1335 chromosome 10 THAPSchr_10_Cont13, whole
              genome shotgun sequence
          Length = 1105668

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
 Frame = +1

Query: 207    GFLAGIGLDVTVMVRSILLRGFDQD---MANK-------IGEHMEEHGIKFIRQFVPIKV 256
              G  A +  D  V+V   +L   + +   +AN+       IGEH+E  G+      V +  
Sbjct: 992059 GLAADVAADKPVVVTKFILGAKEIEFDAVANEGKILNYAIGEHLENAGVHSGDATVILPA 992238

Query: 257    EQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRD 294
              +++  GT  +++  A +      I G +N   +AIG D
Sbjct: 992239 QKLYVGTIRQIKKYATAIAKALNITGPFNIQFMAIGND 992352



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 8/183 (4%)
 Frame = -1

Query: 71     HQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA 130
              HQ  L  ++ +    +        K ++   I   +N IG L    ++ ++  K V  N 
Sbjct: 698652 HQVTLFDKSNEIGGQFNMAKRIPGKEEFHETIRYFKNQIGKLQKEGKLDMQLGKEVTYNE 698473

Query: 131    YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG-DKEYCISSDDLFSLPYC 189
                Q           + G  KI   +++++ATG  PR   IPG +    +S  D+      
Sbjct: 698472 MEQL----------SSGDNKI---DKWIVATGVDPRMPAIPGREHPNVLSYIDVLRDKAK 698332

Query: 190    PGKTL-VVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANK------IGEHMEE 242
               GKT+ VVGA            GIG DV+      LL   D D  +K      + E +E 
Sbjct: 698331 VGKTVAVVGA-----------GGIGFDVS----EYLLHHDDNDDHDKKADEVNVDEFLES 698197

Query: 243    HGI 245
               G+
Sbjct: 698196 WGV 698188


>gb|AAFD02000030.1| Thalassiosira pseudonana CCMP1335 chromosome 19a THAPSchr_19a_19_Cont30,
              whole genome shotgun sequence
          Length = 552297

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
 Frame = -3

Query: 217    TVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAG------TPGRLRVV 270
              T+MV +I   G D D A  +G  +E        + VP  +E +  G      TP  +  +
Sbjct: 453346 TLMVHNIDTIGADVD-AGILGMFLESKST-LAYEVVPRCIEDMGGGLFYVNGTPRLVEGL 453173

Query: 271    AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEE-QTNVPYI 329
              A  T  +E+    YN++   +  D+   K GL      I E++ KIP    +    +P  
Sbjct: 453172 ALPTEEDELKSSYYNSLTTWVDIDSLLSKFGLNR--SDILEQSEKIPAAVHQFSRRLPTY 452999

Query: 330    YAIGDI 335
                I D+
Sbjct: 452998 VTIKDV 452981


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:14 PM
  Number of letters in database: 29,453,142
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,610,538
Number of Sequences: 113
Number of extensions: 247335
Number of successful extensions: 1036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 411
length of query: 499
length of database: 9,817,714
effective HSP length: 104
effective length of query: 395
effective length of database: 9,805,962
effective search space: 3873354990
effective search space used: 3873354990
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
