Command line: [exonerate -m p2g --showtargetgff -q ParvaNCBI.aa.fa -t cromParvaVSAanopha.fa]
Hostname: [ws101177.aulescm.upf.edu]

C4 Alignment:
------------
         Query: gi|71026969|ref|XP_763128.1| thioredoxin reductase [Theileria parva strain Muguga]
        Target: gi|68349971|gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2749
   Query range: 0 -> 567
  Target range: 213013 -> 216373

      1 : MetGluGluLeuIleCysGluLeuLysMetPheAsnPheLysArgLeuLysLeuIleS :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetGluGluLeuIleCysGluLeuLysMetPheAsnPheLysArgLeuLysLeuIleS
 213014 : ATGGAGGAGTTAATTTGTGAGCTTAAAATGTTTAATTTTAAAAGGTTAAAATTGATCT : 213071

     21 : erSerAlaValProArgIlePheLeuSerSerTyrLeuLeuPheArgGlnSerAspPh :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erSerAlaValProArgIlePheLeuSerSerTyrLeuLeuPheArgGlnSerAspPh
 213072 : CAAGTGCCGTTCCGAGGATTTTTTTGTCGTCTTATTTACTCTTTCGGCAGTCTGATTT : 213128

     40 : eThrProHisSerLeuCysTyrAsnIleAsnPheHisProSerAspArgThrIleSer :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eThrProHisSerLeuCysTyrAsnIleAsnPheHisProSerAspArgThrIleSer
 213129 : CACCCCTCACTCGCTCTGTTATAACATCAACTTCCATCCTTCCGATCGCACAATTTCC : 213185

     59 : LeuPheAsnLysTyrProAsnProAsnThrSerLeuHisSerGlnHisSerThrCysT :     78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuPheAsnLysTyrProAsnProAsnThrSerLeuHisSerGlnHisSerThrCysT
 213186 : CTTTTCAATAAATATCCCAACCCTAACACGAGTTTACACTCTCAACACTCCACTTGTT : 213245

     79 : yrSerThrProValGlnLeuArgAsnProMetAlaArgTyrAspLeuValValLeuGl :     97
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yrSerThrProValGlnLeuArgAsnProMetAlaArgTyrAspLeuValValLeuGl
 213246 : ATTCTACTCCTGTACAACTCCGTAATCCTATGGCCCGTTATGACTTGGTGGTTTTGGG : 213302

     98 : yGlyGlyProAlaGlyMetAlaAlaAlaLysGluAlaAlaArgLeuGlyLysArgThr :    116
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yGlyGlyProAlaGlyMetAlaAlaAlaLysGluAlaAlaArgLeuGlyLysArgThr
 213303 : CGGGGGTCCGGCTGGAATGGCGGCGGCAAAGGAAGCCGCCAGGTTAGGCAAGAGGACA : 213359

    117 : ValLeuPheAspTyrValThrProSerProArgGlyThrSerTrpGlyValGlyGlyT :    136
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValLeuPheAspTyrValThrProSerProArgGlyThrSerTrpGlyValGlyGlyT
 213360 : GTACTGTTTGACTACGTGACACCGTCACCCAGGGGTACGTCTTGGGGTGTTGGCGGTA : 213419

    137 : hrCysValAsnValGlyCysIleProLysLysLeuMetHisTyrAlaSerLeuLeuAr :    155
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrCysValAsnValGlyCysIleProLysLysLeuMetHisTyrAlaSerLeuLeuAr
 213420 : CCTGCGTCAACGTCGGGTGTATCCCCAAGAAACTCATGCACTACGCCAGCCTACTCAG : 213476

    156 : gSerThrGlnTyrAspArgPheGlnTyrGlyIleThrSerSerProAspGlnGluGln :    174
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          gSerThrGlnTyrAspArgPheGlnTyrGlyIleThrSerSerProAspGlnGluGln
 213477 : GAGCACACAATACGACAGGTTTCAATATGGGATCACAAGCTCACCGGATCAAGAACAG : 213533

    175 : ValAsnTrpThrLysLeuThrGln  >>>> Target Intron 1 >>>>  ThrIl :    184
          ||||||||||||||||||||||||            55 bp            |||||
          ValAsnTrpThrLysLeuThrGln++                         ++ThrIl
 213534 : GTCAACTGGACCAAACTCACACAAgt.........................agACGAT : 213618

    185 : eGlnAsnTyrValLysMetLeuAsnPheSerTyrArgSerGlyLeuThrThrAlaGly :    203
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eGlnAsnTyrValLysMetLeuAsnPheSerTyrArgSerGlyLeuThrThrAlaGly
 213619 : CCAGAATTATGTGAAGATGTTGAATTTTTCGTATCGTTCGGGTTTAACGACGGCTGGC : 213675

    204 : ValAspTyrIleAsnAlaTyrGlyThrLeuLysHisAsnAsnThrValGluTyrThrH :    223
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValAspTyrIleAsnAlaTyrGlyThrLeuLysHisAsnAsnThrValGluTyrThrH
 213676 : GTGGATTATATCAACGCCTACGGCACTCTTAAACATAATAATACTGTAGAATATACTC : 213735

    224 : isAsnAsnGluThrLys  >>>> Target Intron 2 >>>>  SerValValGly :    232
          |||||||||||||||||            338 bp           ||||||||||||
          isAsnAsnGluThrLys++                         ++SerValValGly
 213736 : ACAATAATGAAACTAAGgt.........................agAGTGTGGTGGGT : 214100

    233 : GluLysValIleIleAlaValGlyGluArgProTyrValProSerAspValGlnGlyA :    252
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluLysValIleIleAlaValGlyGluArgProTyrValProSerAspValGlnGlyA
 214101 : GAAAAGGTGATAATAGCGGTTGGTGAGAGGCCTTATGTGCCGTCAGATGTTCAAGGTG : 214160

    253 : laLeuGluTyrAlaIleThrSerAspAspLeuPheLysLeuAsnThrSerProGlyLy :    271
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laLeuGluTyrAlaIleThrSerAspAspLeuPheLysLeuAsnThrSerProGlyLy
 214161 : CTCTGGAATACGCCATCACCTCCGATGATCTCTTCAAACTCAATACCTCCCCAGGCAA : 214217

    272 : s{Th}  >>>> Target Intron 3 >>>>  {r}LeuIleValGlyAlaSerTyr :    279
          |{||}            91 bp            {|}|||||||||||||||||||||
          s{Th}++                         ++{r}LeuIleValGlyAlaSerTyr
 214218 : A{AC}gt.........................ag{A}TTGATAGTTGGAGCGAGTTAT : 214332

    280 : ValAlaLeuGluCysAlaGlyPheLeuThrGlyLeuGlyPheAsp  >>>> Target :    295
          |||||||||||||||||||||||||||||||||||||||||||||            2
          ValAlaLeuGluCysAlaGlyPheLeuThrGlyLeuGlyPheAsp++           
 214333 : GTAGCATTAGAATGTGCCGGGTTCCTCACAGGCCTAGGATTCGACgt........... : 214382

    296 :  Intron 4 >>>>  ValAspValSerValArgSerIleLeuLeuArgGlyPheAsp :    308
          32 bp           ||||||||||||||||||||||||||||||||||||||||||
                        ++ValAspValSerValArgSerIleLeuLeuArgGlyPheAsp
 214383 : ..............agGTGGATGTATCGGTCCGTAGTATATTATTGAGAGGTTTTGAC : 214651

    309 : ArgGlnCysValArgLysValGluGluLeuMetGluAlaSerGlyValSerPheLeuT :    328
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ArgGlnCysValArgLysValGluGluLeuMetGluAlaSerGlyValSerPheLeuT
 214652 : AGGCAGTGTGTGCGGAAGGTGGAGGAGCTTATGGAAGCGTCCGGCGTCTCCTTTCTAT : 214711

    329 : yrGlnLysLeuProThrLysIleGluLysValAsnGlnArgLeuLysValLysPheTh :    347
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yrGlnLysLeuProThrLysIleGluLysValAsnGlnArgLeuLysValLysPheTh
 214712 : ACCAGAAACTGCCAACCAAAATTGAAAAAGTCAACCAACGCCTCAAAGTAAAATTCAC : 214768

    348 : rHisSerTyrSerPheLeuHisIlePheTyr{A}  >>>> Target Intron 5 > :    358
          |||||||||||||||||||||||||||||||{|}            314 bp      
          rHisSerTyrSerPheLeuHisIlePheTyr{A}++                      
 214769 : ACATTCTTACTCATTCTTACACATTTTTTAT{A}gt...................... : 214804

    359 : >>>  {sn}LeuArgGluLeuGlyLeuGluPheAspGlyAsnGlyAsnIleIleAlaP :    375
               {||}|||||||||||||||||||||||||||||||||||||||||||||||||
             ++{sn}LeuArgGluLeuGlyLeuGluPheAspGlyAsnGlyAsnIleIleAlaP
 214805 : ...ag{AT}TTACGGGAGTTGGGTCTGGAGTTTGATGGGAATGGTAATATAATAGCGC : 215166

    376 : roAsnGluGluThrAsnIleLysAsnValTyrAlaValGlyAspIleValSerLysVa :    394
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          roAsnGluGluThrAsnIleLysAsnValTyrAlaValGlyAspIleValSerLysVa
 215167 : CTAACGAGGAGACTAATATAAAAAATGTGTACGCTGTTGGCGACATTGTGTCAAAAGT : 215223

    395 : lProLysLeuAlaProValAlaIleLysSerSerGluLeuLeuIleGlnArgLeuTyr :    413
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lProLysLeuAlaProValAlaIleLysSerSerGluLeuLeuIleGlnArgLeuTyr
 215224 : GCCCAAACTCGCGCCCGTAGCAATTAAATCCTCAGAGTTACTCATTCAGCGACTTTAC : 215280

    414 : SerAsnThrAsnThrLys  >>>> Target Intron 6 >>>>  MetAsnTyrGl :    423
          ||||||||||||||||||            66 bp            |||||||||||
          SerAsnThrAsnThrLys++                         ++MetAsnTyrGl
 215281 : TCCAATACAAACACAAAAgt.........................agATGAACTATGA : 215376

    424 : uAsnValProLysCysValTyrThrProPheGluTyrSerSerCysGlyLeuThrGlu :    442
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uAsnValProLysCysValTyrThrProPheGluTyrSerSerCysGlyLeuThrGlu
 215377 : GAATGTGCCGAAATGTGTTTATACGCCCTTTGAATATTCCTCGTGCGGTCTCACCGAA : 215433

    443 : GluGluAlaIle  >>>> Target Intron 7 >>>>  GluArgPheGlyGluGl :    452
          ||||||||||||            408 bp           |||||||||||||||||
          GluGluAlaIle++                         ++GluArgPheGlyGluGl
 215434 : GAAGAAGCCATTgt.........................agGAGCGTTTTGGTGAGGA : 215871

    453 : uAsnLeuGluIleTyrLeuLysGluTyrAsnAsnLeuGluIleSerProValHisArg :    471
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uAsnLeuGluIleTyrLeuLysGluTyrAsnAsnLeuGluIleSerProValHisArg
 215872 : GAACCTGGAAATCTACCTCAAGGAATACAACAACTTAGAAATCTCACCCGTCCACAGA : 215928

    472 : IleAsnLysLysThrAsnAsp{G}  >>>> Target Intron 8 >>>>  {lu}P :    480
          |||||||||||||||||||||{|}            155 bp           {||}|
          IleAsnLysLysThrAsnAsp{G}++                         ++{lu}P
 215929 : ATCAACAAAAAAACCAACGAC{G}gt.........................ag{AG}T : 216110

    481 : heAspTyrProMetThrCysLeuSerLysValIleCysLeuArgAspGlyLysIleVa :    499
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          heAspTyrProMetThrCysLeuSerLysValIleCysLeuArgAspGlyLysIleVa
 216111 : TTGACTATCCTATGACGTGTTTGAGTAAAGTAATTTGTTTGAGGGACGGGAAGATCGT : 216167

    500 : lGlyMetHisPheValGlyProAsnAlaGlyGluIleMetGlnGlyPheSerValLeu :    518
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lGlyMetHisPheValGlyProAsnAlaGlyGluIleMetGlnGlyPheSerValLeu
 216168 : TGGAATGCATTTTGTGGGCCCGAATGCGGGTGAGATTATGCAGGGGTTTTCAGTCCTC : 216224

    519 : PheThrLeuAsnAlaLysLysSerAspLeuAspLysThrValGlyIleHisProThrA :    538
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          PheThrLeuAsnAlaLysLysSerAspLeuAspLysThrValGlyIleHisProThrA
 216225 : TTTACGCTCAATGCGAAGAAAAGTGACTTGGATAAGACCGTCGGAATTCATCCAACTG : 216284

    539 : spAlaGluSerPheValAsnLeuThrValThrLysAlaSerGlyAspSerTrpValAl :    557
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          spAlaGluSerPheValAsnLeuThrValThrLysAlaSerGlyAspSerTrpValAl
 216285 : ACGCTGAAAGCTTCGTTAACCTCACCGTTACCAAGGCCAGCGGCGACTCCTGGGTCGC : 216341

    558 : aThrGlyGlyCysAlaGlyGlyLysCysGly :    567
          |||||||||||||||||||||||||||||||
          aThrGlyGlyCysAlaGlyGlyLysCysGly
 216342 : CACCGGCGGCTGCGCCGGCGGTAAATGCGGC : 216373

vulgar: gi|71026969|ref|XP_763128.1| 0 567 . gi|68349971|gb|AAGK01000005.1| 213013 216373 + 2749 M 182 546 5 0 2 I 0 51 3 0 2 M 46 138 5 0 2 I 0 334 3 0 2 M 43 129 S 0 2 5 0 2 I 0 87 3 0 2 S 1 1 M 22 66 5 0 2 I 0 228 3 0 2 M 63 189 S 0 1 5 0 2 I 0 310 3 0 2 S 1 2 M 61 183 5 0 2 I 0 62 3 0 2 M 27 81 5 0 2 I 0 404 3 0 2 M 32 96 S 0 1 5 0 2 I 0 151 3 0 2 S 1 2 M 88 264
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	gene	213014	216373	2749	+	.	gene_id 1 ; sequence gi|71026969|ref|XP_763128.1| ; gene_orientation +
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	213014	213559	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	213014	213559	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice5	213560	213561	.	+	.	intron_id 1 ; splice_site "GT"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	intron	213560	213614	.	+	.	intron_id 1
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice3	213613	213614	.	+	.	intron_id 0 ; splice_site "AG"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	213615	213752	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	213615	213752	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice5	213753	213754	.	+	.	intron_id 2 ; splice_site "GT"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	intron	213753	214090	.	+	.	intron_id 2
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice3	214089	214090	.	+	.	intron_id 1 ; splice_site "AG"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	214091	214221	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	214091	214221	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice5	214222	214223	.	+	.	intron_id 3 ; splice_site "GT"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	intron	214222	214312	.	+	.	intron_id 3
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice3	214311	214312	.	+	.	intron_id 2 ; splice_site "AG"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	214313	214379	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	214313	214379	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice5	214380	214381	.	+	.	intron_id 4 ; splice_site "GT"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	intron	214380	214611	.	+	.	intron_id 4
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice3	214610	214611	.	+	.	intron_id 3 ; splice_site "AG"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	214612	214801	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	214612	214801	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice5	214802	214803	.	+	.	intron_id 5 ; splice_site "GT"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	intron	214802	215115	.	+	.	intron_id 5
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice3	215114	215115	.	+	.	intron_id 4 ; splice_site "AG"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	215116	215300	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	215116	215300	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice5	215301	215302	.	+	.	intron_id 6 ; splice_site "GT"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	intron	215301	215366	.	+	.	intron_id 6
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice3	215365	215366	.	+	.	intron_id 5 ; splice_site "AG"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	215367	215447	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	215367	215447	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice5	215448	215449	.	+	.	intron_id 7 ; splice_site "GT"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	intron	215448	215855	.	+	.	intron_id 7
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice3	215854	215855	.	+	.	intron_id 6 ; splice_site "AG"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	215856	215952	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	215856	215952	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice5	215953	215954	.	+	.	intron_id 8 ; splice_site "GT"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	intron	215953	216107	.	+	.	intron_id 8
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	splice3	216106	216107	.	+	.	intron_id 7 ; splice_site "AG"
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	cds	216108	216373	.	+	.	
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	exon	216108	216373	.	+	.	insertions 0 ; deletions 0
gi|68349971|gb|AAGK01000005.1|	exonerate:protein2genome:local	similarity	213014	216373	2749	+	.	alignment_id 1 ; Query gi|71026969|ref|XP_763128.1| ; Align 213014 1 546 ; Align 213615 183 138 ; Align 214091 229 129 ; Align 214314 273 66 ; Align 214612 295 189 ; Align 215118 359 183 ; Align 215367 420 81 ; Align 215856 447 96 ; Align 216110 480 264
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
