Command line: [exonerate -m p2g --showtargetgff -q querygondii.fa -t fastafetchgondii.fa]
Hostname: [ws101175.aulescm.upf.edu]

C4 Alignment:
------------
         Query: gi|221487293|gb|EEE25525.1| thioredoxin reductase, putative [Toxoplasma gondii GT1]
        Target: gi|158533829|gb|AAQM02000139.1| Toxoplasma gondii GT1 gcontig_1107000936588, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 3361
   Query range: 0 -> 662
  Target range: 15578 -> 8058

     1 : MetSerCysLeuSerValSerAlaAlaArgAlaTyrAlaAlaAlaAlaAlaSerArgPro :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetSerCysLeuSerValSerAlaAlaArgAlaTyrAlaAlaAlaAlaAlaSerArgPro
 15578 : ATGAGTTGCCTCTCTGTGTCTGCGGCAAGGGCGTACGCTGCTGCTGCTGCCTCTCGGCCC : 15521

    21 : ValSerAlaSerPheLeuProAlaPheSerArgLeuSerGlnCysSerPheLeuSerGlu :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValSerAlaSerPheLeuProAlaPheSerArgLeuSerGlnCysSerPheLeuSerGlu
 15520 : GTTTCCGCGTCTTTTCTGCCGGCTTTCTCGCGTCTCTCGCAGTGCAGTTTTCTCAGCGAA : 15461

    41 : AsnCysValLeuArgCysThrSerSerValTyrProAlaSerHisSerThrHisArgThr :    60
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnCysValLeuArgCysThrSerSerValTyrProAlaSerHisSerThrHisArgThr
 15460 : AACTGCGTTTTACGCTGTACTTCTTCCGTTTATCCGGCTTCGCACTCGACGCATCGCACA : 15401

    61 : AsnAlaLeuGlnSerThrLeuSerAlaValValProProGluArgLeuProCysThrPro :    80
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnAlaLeuGlnSerThrLeuSerAlaValValProProGluArgLeuProCysThrPro
 15400 : AACGCTCTCCAGTCGACTCTCTCAGCTGTCGTCCCCCCGGAAAGGTTGCCTTGCACCCCC : 15341

    81 : LeuAlaHisAlaAlaAlaValValAlaValTrpAsnSerGlySerLeuLeuValSerThr :   100
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuAlaHisAlaAlaAlaValValAlaValTrpAsnSerGlySerLeuLeuValSerThr
 15340 : CTCGCGCACGCGGCCGCCGTCGTCGCTGTCTGGAATTCTGGGTCTCTGCTCGTTTCTACA : 15281

   101 : ProLeuPheSerValCysArgThrGluThrSerSerCysAlaProProAlaGlnArgGln :   120
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ProLeuPheSerValCysArgThrGluThrSerSerCysAlaProProAlaGlnArgGln
 15280 : CCACTTTTCTCGGTCTGTCGCACCGAAACTAGCAGCTGCGCACCGCCGGCACAGCGACAG : 15221

   121 : GlnGluArgAlaPheAlaSerGluArgLysLeuSerValIleSerThrAsnAlaSerGlu :   140
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlnGluArgAlaPheAlaSerGluArgLysLeuSerValIleSerThrAsnAlaSerGlu
 15220 : CAGGAACGCGCCTTCGCCTCCGAGAGAAAACTCTCAGTTATTTCAACGAACGCGAGCGAA : 15161

   141 : MetAlaProThrAsnThrAsnAsnGlyAlaProSerCysAlaAspGlyGluPheAspTyr :   160
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetAlaProThrAsnThrAsnAsnGlyAlaProSerCysAlaAspGlyGluPheAspTyr
 15160 : ATGGCGCCCACAAACACGAACAACGGCGCTCCCTCCTGTGCCGATGGAGAATTCGACTAC : 15101

   161 : AspLeuAla{V}  >>>> Target Intron 1 >>>>  {al}IleGlyGlyGlySer :   169
         |||||||||{|}           1114 bp           {||}|||||||||||||||
         AspLeuAla{V}+-                         ++{al}IleGlyGlyGlySer
 15100 : GACCTCGCA{G}gc.........................ag{TC}ATTGGCGGAGGCAGC : 13960

   170 : GlyGlyLeuAlaCysAlaLysMetAlaAlaAlaGlnGlyAlaLysThrValValPheAsp :   189
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyGlyLeuAlaCysAlaLysMetAlaAlaAlaGlnGlyAlaLysThrValValPheAsp
 13959 : GGCGGCTTGGCGTGCGCGAAGATGGCCGCGGCGCAAGGCGCAAAGACCGTCGTTTTCGAC : 13900

   190 : PheValGlnProSerThrGlnGlySerThrTrpGlyLeuGlyGlyThrCysValAsnVal :   209
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         PheValGlnProSerThrGlnGlySerThrTrpGlyLeuGlyGlyThrCysValAsnVal
 13899 : TTTGTTCAGCCGTCCACTCAGGGCTCTACTTGGGGGCTGGGAGGAACTTGCGTGAACGTC : 13840

   210 : GlyCysValProLysTyrLeuPheHisHisThrGlyLeuAlaGlyAlaAsnAlaHisTrp :   229
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyCysValProLysTyrLeuPheHisHisThrGlyLeuAlaGlyAlaAsnAlaHisTrp
 13839 : GGATGCGTCCCCAAATACCTTTTCCACCACACCGGACTCGCGGGTGCCAACGCACACTGG : 13780

   230 : AspGlyProHisMetGlyTrpLysGlyLysPheGluGluGlnValAspTrpGlyValCys :   249
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AspGlyProHisMetGlyTrpLysGlyLysPheGluGluGlnValAspTrpGlyValCys
 13779 : GATGGCCCTCACATGGGATGGAAGGGAAAGTTTGAGGAGCAGGTCGACTGGGGTGTCTGC : 13720

   250 : ValGlu  >>>> Target Intron 2 >>>>  LysValGlnAsnTyrIleLysSerL :   260
         ||||||            414 bp           |||||||||||||||||||||||||
         ValGlu++                         ++LysValGlnAsnTyrIleLysSerL
 13719 : GTCGAGgt.........................agAAAGTTCAAAACTACATCAAGTCTC : 13273

   261 : euAsnPheGlyTyrArgThrGlyLeuArgLysAlaGlyValThrTyrIleAsnAlaTyrA :   280
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         euAsnPheGlyTyrArgThrGlyLeuArgLysAlaGlyValThrTyrIleAsnAlaTyrA
 13272 : TGAACTTTGGATATCGCACCGGACTCCGCAAGGCGGGCGTCACCTACATCAACGCGTATG : 13213

   281 : laLysPheValSerProHisGluLeuAlaTyrThrPheArgGlyGlu  >>>> Target :   296
         |||||||||||||||||||||||||||||||||||||||||||||||            5
         laLysPheValSerProHisGluLeuAlaTyrThrPheArgGlyGlu++           
 13212 : CCAAGTTCGTTTCGCCGCATGAGCTTGCGTACACCTTTCGAGGAGAAgt........... : 13163

   297 :  Intron 3 >>>>  AspLysIleCysLysAlaArgAsnIleValValAlaValGlyGl :   310
         75 bp           ||||||||||||||||||||||||||||||||||||||||||||
                       ++AspLysIleCysLysAlaArgAsnIleValValAlaValGlyGl
 13162 : ..............agGATAAAATTTGCAAGGCGAGGAACATCGTGGTGGCGGTCGGAGG : 12548

   311 : yArgProHisIleProGluGluValGluGlyAlaLysGluLeuAlaIleThrSerAspAs :   330
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         yArgProHisIleProGluGluValGluGlyAlaLysGluLeuAlaIleThrSerAspAs
 12547 : CAGACCTCACATTCCTGAAGAGGTCGAGGGGGCAAAGGAGCTCGCGATCACAAGTGATGA : 12488

   331 : pIlePheSerLeuLysGlnAlaProAsnLys{Th}  >>>> Target Intron 4 >> :   341
         |||||||||||||||||||||||||||||||{||}            439 bp       
         pIlePheSerLeuLysGlnAlaProAsnLys{Th}++                       
 12487 : CATTTTCTCTCTCAAGCAAGCCCCCAACAAG{AC}gt....................... : 12451

   342 : >>  {r}LeuCysValGlyAlaSerTyrIleSerLeuGluCysAlaGlyPheLeuArgGl :   359
             {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||
           ++{r}LeuCysValGlyAlaSerTyrIleSerLeuGluCysAlaGlyPheLeuArgGl
 12450 : ..ag{A}CTCTGCGTAGGGGCGAGTTACATTTCTCTTGAATGCGCCGGCTTCCTCCGCGA : 11962

   360 : uLeuGlyPheAsp  >>>> Target Intron 5 >>>>  ValThrValAlaValArg :   369
         |||||||||||||            250 bp           ||||||||||||||||||
         uLeuGlyPheAsp++                         ++ValThrValAlaValArg
 11961 : ATTGGGATTTGACgt.........................agGTCACCGTGGCTGTGCGT : 11682

   370 : SerIleLeuLeuArgGlyPheAspArgGlnCysAlaGluGlnValGlyLeuCysLeuGlu :   389
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerIleLeuLeuArgGlyPheAspArgGlnCysAlaGluGlnValGlyLeuCysLeuGlu
 11681 : TCCATATTGCTGCGCGGCTTCGATCGGCAGTGCGCAGAGCAAGTTGGACTTTGTTTGGAG : 11622

   390 : GluAlaGlyValArgIleLeuArgGluThrIleProAlaLysMetValLysGlnAlaAsn :   409
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GluAlaGlyValArgIleLeuArgGluThrIleProAlaLysMetValLysGlnAlaAsn
 11621 : GAGGCAGGTGTCCGGATTTTGCGGGAAACCATCCCTGCGAAGATGGTGAAGCAGGCGAAT : 11562

   410 : GlyLysIleGlnValThrPheGlnValGlyLysGluLysLysGluLeuValGluGluPhe :   429
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyLysIleGlnValThrPheGlnValGlyLysGluLysLysGluLeuValGluGluPhe
 11561 : GGAAAAATCCAAGTAACGTTTCAGGTCGGAAAGGAGAAGAAGGAGCTCGTCGAGGAATTC : 11502

   430 : AspThrValLeuTyrAlaThrGlyArgLysAlaAspThrSerAsnLeu{A}  >>>> Ta :   446
         ||||||||||||||||||||||||||||||||||||||||||||||||{|}         
         AspThrValLeuTyrAlaThrGlyArgLysAlaAspThrSerAsnLeu{A}++       
 11501 : GACACGGTCCTCTACGCCACAGGACGCAAAGCCGACACCTCCAACCTC{A}gt....... : 11448

   447 : rget Intron 6 >>>>  {sn}LeuGlnAlaAlaGlyValGluThrThrGluThrGly :   458
            500 bp           {||}||||||||||||||||||||||||||||||||||||
                           ++{sn}LeuGlnAlaAlaGlyValGluThrThrGluThrGly
 11447 : ..................ag{AT}CTTCAGGCTGCAGGCGTCGAGACCACGGAGACTGGG : 10915

   459 : LysIleValCysAspGlyAspSerHisThrSerAlaProSerValTyrAlaIle{G}  > :   477
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||{|}   
         LysIleValCysAspGlyAspSerHisThrSerAlaProSerValTyrAlaIle{G}++ 
 10914 : AAGATCGTCTGCGATGGCGACAGCCACACAAGCGCCCCATCTGTCTACGCGATC{G}gt. : 10855

   478 : >>> Target Intron 7 >>>>  {ly}AspAlaValGluAsnPheProGluLeuThr :   487
                  765 bp           {||}||||||||||||||||||||||||||||||
                                 ++{ly}AspAlaValGluAsnPheProGluLeuThr
 10854 : ........................ag{GC}GACGCTGTGGAAAACTTCCCAGAGTTGACA : 10063

   488 : ProValAlaIleLysAlaGlyGluIleLeuAlaArgArgLeuPheAlaAsnSerThrGlu :   507
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ProValAlaIleLysAlaGlyGluIleLeuAlaArgArgLeuPheAlaAsnSerThrGlu
 10062 : CCAGTTGCCATCAAGGCTGGAGAGATCCTTGCCCGCCGTCTCTTCGCGAACAGCACAGAA : 10003

   508 : His  >>>> Target Intron 8 >>>>  MetAspPheThrAsnIleProThrThrV :   518
         |||            423 bp           ||||||||||||||||||||||||||||
         His++                         ++MetAspPheThrAsnIleProThrThrV
 10002 : CATgt.........................agATGGATTTCACCAACATTCCGACAACGG :  9547

   519 : alPheThrProIleGluTyrAlaHisThrGlyTyrSerGluGluAlaAlaGlu  >>>>  :   536
         |||||||||||||||||||||||||||||||||||||||||||||||||||||       
         alPheThrProIleGluTyrAlaHisThrGlyTyrSerGluGluAlaAlaGlu++     
  9546 : TGTTTACGCCGATCGAGTACGCCCACACCGGATACTCGGAGGAAGCCGCTGAGgt..... :  9491

   537 : Target Intron 9 >>>>  AlaGluPheGlyArgAspAspLeuGluValTyrLeuPh :   548
              413 bp           ||||||||||||||||||||||||||||||||||||||
                             ++AlaGluPheGlyArgAspAspLeuGluValTyrLeuPh
  9490 : ....................agGCGGAGTTTGGACGCGACGATCTGGAGGTTTATCTGTT :  9044

   549 : eGlnPheSerProLeuPhePheSerCysValHisArgGluLysAlaProGlnAlaArgLy :   568
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         eGlnPheSerProLeuPhePheSerCysValHisArgGluLysAlaProGlnAlaArgLy
  9043 : CCAGTTTTCGCCGCTCTTCTTCTCCTGCGTGCACCGCGAGAAGGCGCCGCAGGCCAGGAA :  8984

   569 : sSerProGluAspValAspIleThrProProCysLeuAlaLysLeuIleCysValLysSe :   588
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         sSerProGluAspValAspIleThrProProCysLeuAlaLysLeuIleCysValLysSe
  8983 : GAGCCCCGAAGACGTCGACATCACCCCGCCATGCCTCGCGAAGCTGATCTGCGTGAAAAG :  8924

   589 : rGluAspGluLysValValGlyIleHisPheValGlyProAsnAlaGlyGluLeuMetGl :   608
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rGluAspGluLysValValGlyIleHisPheValGlyProAsnAlaGlyGluLeuMetGl
  8923 : CGAGGACGAGAAAGTCGTTGGGATTCACTTCGTGGGTCCGAATGCAGGCGAACTCATGCA :  8864

   609 : nGlyPheAlaLeuAlaValArgLeuGlyAlaLysLys  >>>> Target Intron 10 :   621
         |||||||||||||||||||||||||||||||||||||            641 bp     
         nGlyPheAlaLeuAlaValArgLeuGlyAlaLysLys++                     
  8863 : AGGCTTTGCACTGGCTGTGCGTCTAGGCGCGAAAAAGgt..................... :  8823

   622 :  >>>>  ArgAspPheAspLysCysValGlyIleHisProThrAsnAlaGluAlaPheMe :   638
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
              ++ArgAspPheAspLysCysValGlyIleHisProThrAsnAlaGluAlaPheMe
  8822 : .....agAGAGACTTCGACAAGTGTGTGGGCATCCACCCGACGAACGCAGAAGCTTTCAT :  8133

   639 : tAlaLeuThrValThrLysAlaSerGlyGluProPheValAlaSerGlyGlyCysGlyGl :   658
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         tAlaLeuThrValThrLysAlaSerGlyGluProPheValAlaSerGlyGlyCysGlyGl
  8132 : GGCCCTGACCGTCACCAAGGCAAGTGGAGAGCCATTCGTTGCTTCTGGAGGATGTGGAGG :  8073

   659 : yGlyLysCysGly :   662
         |||||||||||||
         yGlyLysCysGly
  8072 : CGGCAAGTGCGGA :  8059

vulgar: gi|221487293|gb|EEE25525.1| 0 662 . gi|158533829|gb|AAQM02000139.1| 15578 8058 - 3361 M 163 489 S 0 1 5 0 2 I 0 1110 3 0 2 S 1 2 M 87 261 5 0 2 I 0 410 3 0 2 M 44 132 5 0 2 I 0 571 3 0 2 M 45 135 S 0 2 5 0 2 I 0 435 3 0 2 S 1 1 M 22 66 5 0 2 I 0 246 3 0 2 M 82 246 S 0 1 5 0 2 I 0 496 3 0 2 S 1 2 M 30 90 S 0 1 5 0 2 I 0 761 3 0 2 S 1 2 M 31 93 5 0 2 I 0 419 3 0 2 M 27 81 5 0 2 I 0 409 3 0 2 M 85 255 5 0 2 I 0 637 3 0 2 M 42 126
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	gene	8059	15578	3361	-	.	gene_id 1 ; sequence gi|221487293|gb|EEE25525.1| ; gene_orientation +
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	15089	15578	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	15089	15578	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	15087	15088	.	-	.	intron_id 1 ; splice_site "GC"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	13975	15088	.	-	.	intron_id 1
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	13975	13976	.	-	.	intron_id 0 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	13712	13974	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	13712	13974	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	13710	13711	.	-	.	intron_id 2 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	13298	13711	.	-	.	intron_id 2
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	13298	13299	.	-	.	intron_id 1 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	13166	13297	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	13166	13297	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	13164	13165	.	-	.	intron_id 3 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	12591	13165	.	-	.	intron_id 3
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	12591	12592	.	-	.	intron_id 2 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	12454	12590	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	12454	12590	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	12452	12453	.	-	.	intron_id 4 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	12015	12453	.	-	.	intron_id 4
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	12015	12016	.	-	.	intron_id 3 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	11948	12014	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	11948	12014	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	11946	11947	.	-	.	intron_id 5 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	11698	11947	.	-	.	intron_id 5
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	11698	11699	.	-	.	intron_id 4 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	11451	11697	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	11451	11697	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	11449	11450	.	-	.	intron_id 6 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	10951	11450	.	-	.	intron_id 6
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	10951	10952	.	-	.	intron_id 5 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	10858	10950	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	10858	10950	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	10856	10857	.	-	.	intron_id 7 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	10093	10857	.	-	.	intron_id 7
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	10093	10094	.	-	.	intron_id 6 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	9998	10092	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	9998	10092	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	9996	9997	.	-	.	intron_id 8 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	9575	9997	.	-	.	intron_id 8
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	9575	9576	.	-	.	intron_id 7 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	9494	9574	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	9494	9574	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	9492	9493	.	-	.	intron_id 9 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	9081	9493	.	-	.	intron_id 9
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	9081	9082	.	-	.	intron_id 8 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	8826	9080	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	8826	9080	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice5	8824	8825	.	-	.	intron_id 10 ; splice_site "GT"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	intron	8185	8825	.	-	.	intron_id 10
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	splice3	8185	8186	.	-	.	intron_id 9 ; splice_site "AG"
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	cds	8059	8184	.	-	.	
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	exon	8059	8184	.	-	.	insertions 0 ; deletions 0
gi|158533829|gb|AAQM02000139.1|	exonerate:protein2genome:local	similarity	8059	15578	3361	-	.	alignment_id 1 ; Query gi|221487293|gb|EEE25525.1| ; Align 15579 1 489 ; Align 13973 165 261 ; Align 13298 252 132 ; Align 12591 296 135 ; Align 12014 342 66 ; Align 11698 364 246 ; Align 10949 447 90 ; Align 10091 478 93 ; Align 9575 509 81 ; Align 9081 536 255 ; Align 8185 621 126
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
