TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1 #anophagefferens # scaffold_11:subseq(783554,7436).pep  
         (488 letters)

Database: genome.fa 
           10,690 sequences; 16,893,362 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAAJ01002935.1| Plasmodium chabaudi whole genome shotgun ass...   420   e-118
emb|CAAJ01002422.1| Plasmodium chabaudi whole genome shotgun ass...   152   2e-37
emb|CAAJ01009509.1| Plasmodium chabaudi whole genome shotgun ass...   129   2e-30
emb|CAAJ01000994.1| Plasmodium chabaudi whole genome shotgun ass...   114   1e-25
emb|CAAJ01001554.1| Plasmodium chabaudi whole genome shotgun ass...    74   1e-13
emb|CAAJ01001734.1| Plasmodium chabaudi whole genome shotgun ass...    36   0.033
emb|CAAJ01002724.1| Plasmodium chabaudi whole genome shotgun ass...    35   0.043
emb|CAAJ01003431.1| Plasmodium chabaudi whole genome shotgun ass...    35   0.073
emb|CAAJ01003349.1| Plasmodium chabaudi whole genome shotgun ass...    34   0.096
emb|CAAJ01003877.1| Plasmodium chabaudi whole genome shotgun ass...    31   1.1  
emb|CAAJ01004195.1| Plasmodium chabaudi whole genome shotgun ass...    30   1.8  
emb|CAAJ01009217.1| Plasmodium chabaudi whole genome shotgun ass...    29   3.1  
emb|CAAJ01001555.1| Plasmodium chabaudi whole genome shotgun ass...    29   3.1  
emb|CAAJ01009414.1| Plasmodium chabaudi whole genome shotgun ass...    28   9.0  

>emb|CAAJ01002935.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP3210,
            whole genome shotgun sequence
          Length = 5535

 Score =  420 bits (1079), Expect = e-118
 Identities = 225/506 (44%), Positives = 313/506 (61%), Gaps = 19/506 (3%)
 Frame = -2

Query: 2    FDYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLM 61
            +DYD +V+GGG GG+A +KE A  GAKV + DFVKPS  G+ WG+GGTCVNVGC+PKKLM
Sbjct: 5249 YDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSTQGTKWGIGGTCVNVGCVPKKLM 5070

Query: 62   HTASIIGETLKDDAAAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITYLN 121
            H A  +G   K+D+  +GW D     HDW  + STVQ HI+SLNF Y V L+ + + Y+N
Sbjct: 5069 HYAGNMGTLFKNDSEKYGW-DCDNLKHDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYIN 4893

Query: 122  RLGEFEDKNTIS--LTDKKGNKTSVTAARFIVAVGGRPN----KLGCPGGEHAIDSDDLF 175
             L + +DKNT+S  L      +  VT    +VA G RPN     +G    E +I SDD+F
Sbjct: 4892 GLAKLKDKNTVSYYLKGDTSKEECVTGKYILVATGCRPNIPDDVIGAK--ELSITSDDIF 4719

Query: 176  SLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHG 235
            SL + PG+ L VG  Y+ALEC GF   +GY  T  VRSI+LRGFD++C  KI+ +++  G
Sbjct: 4718 SLKRCPGKTLVVGASYVALECAGFLNSLGYDVTISVRSIILRGFDQQCANKIKLYMEEQG 4539

Query: 236  VQLQVGVTPAKIEKDAATGVLTVTDSGGGVHEYDTVLVATGRYADTAALGIDNVPGASAN 295
            V    GV P K+ K+     + V  +      +DTVL A GR  D   L ++ +   + N
Sbjct: 4538 VTFMTGVLPKKLTKE--NDKILVHFNNDTTEVFDTVLYAIGRKGDIDGLNLEKL---NIN 4374

Query: 296  VNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYE 355
            +N   KK+          P+++A+GD+ E  PEL PVAI+AG  LARRLF    E M Y+
Sbjct: 4373 INNNNKKIIADQFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSNEIMKYD 4194

Query: 356  CVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLE----YALSETRSERGD-- 409
             + T+I+TP+EYG+ G SE+ A    G+ N+E ++ EF  LE    + +   ++++ +  
Sbjct: 4193 FIPTSIYTPIEYGSCGYSEEKAYEIFGKNNIEVFLQEFNNLEISAVHRIKHIKAQKDEYD 4014

Query: 410  -----GCFAKLVVDKS-TGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPT 463
                  CF+KLV  K+   +VVGFHY+GPNAGE+TQG ++A++  A  +DF + +GIHPT
Sbjct: 4013 VDISSTCFSKLVCLKNEDNRVVGFHYVGPNAGEVTQGMALALKLNAKKSDFDNCIGIHPT 3834

Query: 464  VAEEFTSMTVTKSSGES-AAKGGCXG 488
             AE F ++T+T SSG S AAKGGC G
Sbjct: 3833 DAESFMNLTITLSSGLSYAAKGGCGG 3756


>emb|CAAJ01002422.1| Plasmodium chabaudi whole genome shotgun assembly, contig
           PC_RP2644, whole genome shotgun sequence
          Length = 7443

 Score =  152 bits (384), Expect = 2e-37
 Identities = 111/373 (29%), Positives = 171/373 (45%), Gaps = 34/373 (9%)
 Frame = +1

Query: 133 SLTDKKGNKTSVTAARFIVAVGGRPNKLGCPGGEHAIDSDDLFSLPKAPGRVLCVGGGYI 192
           S  D+K N+  +     ++AVG  P      G EH I SD+ F + +A  R+  +G GYI
Sbjct: 64  SENDEKNNEI-IEGKNILIAVGNAPVFPPVKGVEHTISSDEFFDIKEAK-RIGIIGSGYI 237

Query: 193 ALECGGFTAGMGYPTTCMVRSI-LLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDA 251
           A+E       +G       R   LLR FD   V ++E  +K + + +       +IEK  
Sbjct: 238 AVELINVIKRLGIEAYIFARGKRLLRKFDESVVNELENDMKKNNINIITMANVEEIEKVH 417

Query: 252 ATGVLTVTDSGGGVHEYDTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDEQLP 311
              +    + G      D V+   GR  +T  L ++ +     N+  K   +   D Q  
Sbjct: 418 DKNLTIYLNDGRKFENLDYVIYCVGRSPNTKNLNLEKL-----NITTKNDYIIVDDNQRT 582

Query: 312 GAPHVYAIGD---VVEGRP------------------------------ELTPVAIEAGL 338
              +++A+GD   V +G+                               +LTPVAI AG 
Sbjct: 583 NLKNIFAVGDCCMVKKGKELEDLNLLKLYNEQVYLNNKKNDTGDSYYNVQLTPVAINAGR 762

Query: 339 RLARRLFGGKTEPMDYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEY 398
            LA R+F  KT   +Y  + T IF+    GTIGLSE++A    G+ NV+ Y S+F  L +
Sbjct: 763 LLADRMFLNKTRKTNYSLIPTVIFSHPPIGTIGLSEEEAINTYGKENVKIYESKFTNLFF 942

Query: 399 ALSETRSERGDGCFAKLVVDKSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTV 458
           ++ +    + +  + KLV       + G H +G NA EI QGF++A++  AT  DF  T+
Sbjct: 943 SVYDMDPSQKEKTYIKLVCVGKEELIKGLHIIGLNADEIIQGFAVALKMNATKKDFDETI 1122

Query: 459 GIHPTVAEEFTSM 471
            IHPT AEE  ++
Sbjct: 1123PIHPTAAEELVTL 1161


>emb|CAAJ01009509.1| Plasmodium chabaudi whole genome shotgun assembly, contig
           PC_PH5164, whole genome shotgun sequence
          Length = 622

 Score =  129 bits (324), Expect = 2e-30
 Identities = 77/211 (36%), Positives = 116/211 (54%), Gaps = 12/211 (5%)
 Frame = -1

Query: 235 GVQLQVGVTPAKIEKDAATGVLTVTDSGGGVHEYDTVLVATGRYADTAALGIDNVPGASA 294
           GV    GV P K+ K+     + V  +      +DTVL A GR  D   L ++ +   + 
Sbjct: 619 GVTFMTGVLPKKLTKE--NDKILVHFNNDTTEVFDTVLYAIGRKGDIDGLNLEKL---NI 455

Query: 295 NVNAKTKKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDY 354
           N+N   KK+          P+++A+GD+ E  PEL PVAI+AG  LARRLF    E M Y
Sbjct: 454 NINNNNKKIIADQFSCTNIPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSNEIMKY 275

Query: 355 ECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLE----YALSETRSERGD- 409
           + + T+I+TP+EYG+ G SE+ A    G+ N+E ++ EF  LE    + +   ++++ + 
Sbjct: 274 DFIPTSIYTPIEYGSCGYSEEKAYEIFGKNNIEVFLQEFNNLEISAVHRIKHIKAQKDEY 95

Query: 410 ------GCFAKLVVDKS-TGKVVGFHYLGPN 433
                  CF+KLV  K+   +VVGFHY+GPN
Sbjct: 94  DVDISSTCFSKLVCLKNEDNRVVGFHYVGPN 2


>emb|CAAJ01000994.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP1079,
            whole genome shotgun sequence
          Length = 2594

 Score =  114 bits (284), Expect = 1e-25
 Identities = 128/499 (25%), Positives = 204/499 (40%), Gaps = 36/499 (7%)
 Frame = -1

Query: 4    YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKK-LMH 62
            YDV+V+GGG GG  CS  C +   KV  ++  K         LGGTC+N GCIP K L+H
Sbjct: 1469 YDVIVIGGGPGGYVCSIRCGQNKLKVLNVNEDKK--------LGGTCLNRGCIPSKSLLH 1314

Query: 63   TASIIGETL-KDDAAAFGWKDAAAGAHDWESMKSTVQDHIKS-LNFKYRVALREAGITYL 120
             A    E+  K         +           K+    ++   ++F Y+    +  + ++
Sbjct: 1313 IAHNYYESKNKFKECGILVDNVKLDIEQLHKHKNKCMGNLADGISFLYK----KNNVKHI 1146

Query: 121  NRLGEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRP-----------------NKLGCP 163
               G   D NTI +  +   +   TA R ++A G +P                 N     
Sbjct: 1145 IGRGSIVDGNTILVETENEGQKKYTAERIVIATGSKPIEIPLKKLDDNNINDVENVKDIL 966

Query: 164  GGEHAI--DSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILLRGFDR 221
              +H I   SDD+ +  + P  +  +GGG I LE G   +  G   T    +  L GF  
Sbjct: 965  EYDHKILQTSDDILNFKEIPKTMSIIGGGVIGLEIGSVFSKFGSDVTVYEYNSRLCGFLD 786

Query: 222  ECVGKIEAHIKHH---GVQLQVGVTPAKIEKDAATGVLTVTDSGG---GVHEYDTVLVAT 275
              V K+   +             +    +       +L   D+        + D VLV  
Sbjct: 785  PDVSKVLQKVLEKIKMKFMFNTSIIGGNLNTSNNEAILYARDNKTNQINKIKSDIVLVCV 606

Query: 276  GRYADTAALGIDNVPGASANVNAKTKKLECVDE--QLPGAPHVYAIGDVVEGRPELTPVA 333
            GR A+   + ++N+   S  +N K KK++ VDE   +   P + AIGD ++G   L   A
Sbjct: 605  GRKANLENINLENL---SIELN-KNKKIQ-VDEYFNVQSQPTIKAIGDAIDG-AMLAHKA 444

Query: 334  IEAGLRLARRLF------GGKTEPMDYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVE 387
             E G  +A  +F        K   ++Y+ + + I+T  E  ++G +E   K    + N +
Sbjct: 443  EEEGYIVADMIFNELKNNNKKKNHINYDLIPSVIYTHPEVASVGYTEQKCKEL--KLNYK 270

Query: 388  SYISEFAPLEYALSETRSERGDGCFAKLVVDKSTGKVVGFHYLGPNAGEITQGFSIAMRK 447
            +    FA    A S +R+        KL+V+K T  V+G   +G NA E+    SI    
Sbjct: 269  AVSFPFA----ANSRSRTIDDYDGLIKLIVEKDTNVVLGSQIIGNNASELILPLSIYASH 102

Query: 448  GATYADFISTVGIHPTVAE 466
              T  +    +  HPT +E
Sbjct: 101  KGTSKNLSKIIYPHPTFSE 45


>emb|CAAJ01001554.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP1692,
            whole genome shotgun sequence
          Length = 3647

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 131/573 (22%), Positives = 207/573 (36%), Gaps = 109/573 (19%)
 Frame = +1

Query: 3    DYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMH 62
            +YDV ++G G GG A +    +   KV +        AG    LGGTCVNVGCIP K + 
Sbjct: 1153 EYDVAILGCGVGGHAAAINAIERNLKVVMF-------AGDEESLGGTCVNVGCIPSKSLL 1311

Query: 63   TASIIGETLKDDAAAFGW-----------KDAAAGAH--------DWESMKSTVQDHIKS 103
             A+     LK+ +    +           KD              + + +K   Q+ IK 
Sbjct: 1312 YATNKYRELKNMSKLCNYGIYSNAYIDKEKDEIKSTQLIADSICINTDKLKEYTQNVIKK 1491

Query: 104  L---------NFKYRVALREAGITYLNRLGEFEDKNTISLTDKKGNKTSVTAARFIVAVG 154
            L         N K+    +   + Y +  G   DK+TI     K NK    A   I+A G
Sbjct: 1492 LKGGITHGMKNTKFIKNSQSVQVVYDH--GYIIDKHTI---QSKKNKQIYKAKNIILATG 1656

Query: 155  GRPNKLGCPGG-----EHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTC 209
              PN    P       +    SD   +L      +  +G G I LE       +G   T 
Sbjct: 1657 STPN---VPQNIQVDQKTVFTSDQAVNLQGLKNYISIIGMGIIGLEFSDIYTALGSEVTF 1827

Query: 210  MVRSILLRGFDRECVGK---------------IEAHIKH-----HGVQLQVGVTPAKIEK 249
               S     F    V K               +   IK+     +G  + +G +      
Sbjct: 1828 FEYSSEFLPFVDTDVAKYFENVFLKNKPINYFLNTEIKYVYPALNGKPVVIGYSSRPKTV 2007

Query: 250  DAATGVLTVTDSGGGVH-EYDTVLVATGRYADTAALGIDNVPGASANVNAKTKK-LECVD 307
             ++    T TD+        D+ LVATGR  +T  +G++       N+NAK  K    VD
Sbjct: 2008 PSSENSTTETDAEPVKELHVDSCLVATGRKPNTENIGLE-------NLNAKMNKGFVSVD 2166

Query: 308  EQL-----------------------PGAPHVYAIGDVVEGRPELTPVAIEAGLRL---- 340
            +QL                           +++ IGD   G+  L   A    LR+    
Sbjct: 2167 DQLRVQIEPIQKTDQSNANTNQSIDTQVHDNIFCIGD-ANGKQMLAHTASHQALRVIDYI 2343

Query: 341  ---------ARRLFGGKTEPMDYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYIS 391
                        +     +P+ Y+ + +  +T  E   +G+SE DAK +L   +V+  I+
Sbjct: 2344 DKKENKKESINSVENISNKPIIYKNIPSVCYTNPELAFVGVSEKDAK-KLYPDSVDVEIT 2520

Query: 392  EFAPLEYALSETR------------------SERGDGCFAKLVVDKSTGKVVGFHYLGPN 433
             +      L E                    ++  +G   K++ +K+T +++G   +G  
Sbjct: 2521 YYKSNSKILCENNISLNTNKNNSYNKGSYNYNDNSNG-MVKMIYNKNTKQLLGVFIVGNY 2697

Query: 434  AGEITQGFSIAMRKGATYADFISTVGIHPTVAE 466
            A  +     +A+    T  D    V  HPTV+E
Sbjct: 2698 ASILIHEAVLAINHNLTIYDLAYMVHSHPTVSE 2796


>emb|CAAJ01001734.1| Plasmodium chabaudi whole genome shotgun assembly, contig
           PC_RP1893, whole genome shotgun sequence
          Length = 3136

 Score = 35.8 bits (81), Expect = 0.033
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +3

Query: 4   YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHT 63
           YDV+V+GGG  G   S   AKLGAK  ++   K S    +       +  G + K++   
Sbjct: 444 YDVIVIGGGHSGCEASYISAKLGAKTLLITQCKESIGEMSCNPSIGGIGKGILVKEIDAL 623

Query: 64  ASIIGETLKDDAAAF 78
             ++G+ +      F
Sbjct: 624 GGLMGKVIDKSGIHF 668


>emb|CAAJ01002724.1| Plasmodium chabaudi whole genome shotgun assembly, contig
           PC_RP2978, whole genome shotgun sequence
          Length = 2635

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = -3

Query: 46  LGGTCVNVGCIPKKL 60
           LGGTCVNVGC+PKK+
Sbjct: 440 LGGTCVNVGCVPKKV 396



 Score = 32.7 bits (73), Expect = 0.28
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -1

Query: 4   YDVVVVGGGSGGLACSKECAK 24
           YD++V+GGGSGG+A ++  A+
Sbjct: 655 YDLIVIGGGSGGMAAARRAAR 593


>emb|CAAJ01003431.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP3755,
            whole genome shotgun sequence
          Length = 2521

 Score = 34.7 bits (78), Expect = 0.073
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 4    YDVVVVGGGSGGLACSKECAKLGAKV 29
            YDV+V+GGG GG  CS  C +   KV
Sbjct: 2071 YDVIVIGGGPGGYVCSIRCGQNKLKV 2148


>emb|CAAJ01003349.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP3668,
             whole genome shotgun sequence
          Length = 15177

 Score = 34.3 bits (77), Expect = 0.096
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 4     YDVVVVGGGSGGLACSKECAKLGAKVAVLD 33
             YD++++GGG+ G   + +CA  G K A++D
Sbjct: 10807 YDILIIGGGATGAGLALDCATRGIKCALID 10718


>emb|CAAJ01003877.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP4241,
            whole genome shotgun sequence
          Length = 2993

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 4    YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVG 54
            YD V+VG G  GL  + E +K   KVA +  + P+ + +    GG    +G
Sbjct: 2438 YDAVIVGAGGAGLRSALELSKNKYKVACITKLFPTRSHTVAAQGGINAALG 2590


>emb|CAAJ01004195.1| Plasmodium chabaudi whole genome shotgun assembly, contig
           PC_RP4581, whole genome shotgun sequence
          Length = 1849

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
 Frame = +3

Query: 91  ESMKSTVQDHIKSLNFKYRVALREAGITYLNRLGEFED-KNTISLTDKKGNKTSVTAAR- 148
           +SMK+TV+D  K  +       +E   T LN + E ED  N  S  D +  K  +     
Sbjct: 189 QSMKATVEDKDKLAD----KIEKEDKETILNAVKEAEDWLNNNSNADSEALKQKLKDVEA 356

Query: 149 ----FIVAVGGRPNKLGCPGGEHAIDSDDL 174
                IV + G+P     P G+  +DSD+L
Sbjct: 357 ICQPIIVKLYGQPGGSSPPPGDEDVDSDEL 446


>emb|CAAJ01009217.1| Plasmodium chabaudi whole genome shotgun assembly, contig
           PC_PH4825, whole genome shotgun sequence
          Length = 932

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 59  KLMHTASIIGETLKDDAAAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRV 110
           K+M+TA    +T K      GWK  A G HD++   +   D ++ +  K+ +
Sbjct: 749 KVMNTACT--KTNKKKIILCGWKAEARGGHDFQFFNNEKLDELEKIEEKWNI 600


>emb|CAAJ01001555.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP1693,
            whole genome shotgun sequence
          Length = 9099

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 59   KLMHTASIIGETLKDDAAAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRV 110
            K+M+TA    +T K      GWK  A G HD++   +   D ++ +  K+ +
Sbjct: 1249 KVMNTACT--KTNKKKIILCGWKAEARGGHDFQFFNNEKLDELEKIEEKWNI 1398


>emb|CAAJ01009414.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_PH5061,
            whole genome shotgun sequence
          Length = 1955

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = -3

Query: 152  AVGGRPNKLGCPGGEHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMV 211
            +VGGRP+ +  PG +          L  APGR    GGG    + G +  G G+     V
Sbjct: 1716 SVGGRPDGIPIPGADG--------GLTYAPGRRGAWGGGDGGGDAGAWGCGGGWVQGDDV 1561

Query: 212  RSILLRGFDR 221
            R+   RG +R
Sbjct: 1560 RA---RGCER 1540


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 16,893,362
  Number of sequences in database:  10,690
  
Lambda     K      H
   0.317    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,177,379
Number of Sequences: 10690
Number of extensions: 64036
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of query: 488
length of database: 5,631,120
effective HSP length: 98
effective length of query: 390
effective length of database: 4,583,500
effective search space: 1787565000
effective search space used: 1787565000
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
