TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           31,653 sequences; 18,560,894 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

terra235e01.p1k                                                        29   2.2  
terra132g06.q1k                                                        27   8.3  
terra123f03.p1k                                                        27   8.3  

>terra235e01.p1k 
          Length = 815

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +1

Query: 277 EEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQ 323
           E + + + N ++L +G+D     + + + G+ I+E+  +I + DEE+
Sbjct: 52  ERLDKFDENNLVLCVGKDEVDLTVKVSSAGLDIDEENMQIELADEEK 192


>terra132g06.q1k 
          Length = 785

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 399 IEVYHSYFWPLEWTIPSRDNNKCYAKII 426
           +E + ++ WPL+W   S ++N C  K++
Sbjct: 233 LEFWGNFAWPLDWKHCSTNHNWCCPKLL 150


>terra123f03.p1k 
          Length = 636

 Score = 27.3 bits (59), Expect = 8.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 399 IEVYHSYFWPLEWTIPSRDNNKCYAKII 426
           +E + ++ WPL+W   S ++N C  K++
Sbjct: 160 LEFWGNFAWPLDWKHCSTNHNWCCPKLL 77


  Database: genome.fa
    Posted date:  Feb 1, 2010  4:17 PM
  Number of letters in database: 18,560,894
  Number of sequences in database:  31,653
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,772,131
Number of Sequences: 31653
Number of extensions: 107404
Number of successful extensions: 247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of query: 499
length of database: 6,186,964
effective HSP length: 96
effective length of query: 403
effective length of database: 3,148,276
effective search space: 1268755228
effective search space used: 1268755228
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
