TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           6902 sequences; 42,263,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AANW02000914.1| Entamoeba invadens IP1 gcontig_1105074712149,...    30   4.1  
gb|AANW02000032.1| Entamoeba invadens IP1 gcontig_1105074721062,...    30   4.1  
gb|AANW02001649.1| Entamoeba invadens IP1 gcontig_1105074715586,...    30   6.9  
gb|AANW02000705.1| Entamoeba invadens IP1 gcontig_1105074709533,...    30   6.9  
gb|AANW02003371.1| Entamoeba invadens IP1 gcontig_1105074717800,...    29   9.1  

>gb|AANW02000914.1| Entamoeba invadens IP1 gcontig_1105074712149, whole genome shotgun
           sequence
          Length = 11627

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 26/197 (13%)
 Frame = +3

Query: 164 RPRYLGIPGDK----EYCISSDDLFSLPYCPGKTL-----VVGASYVALECAGFLAGIGL 214
           +P+ +GIPG+     E+ I    L S+     KT+     VVGA + AL+       +G 
Sbjct: 72  KPKTIGIPGENLKGVEHVIPF--LESVNCHVRKTIGKNVAVVGAGFSALDAVRVARRLGS 245

Query: 215 DVTVMVRSILLRGFDQDMA--NKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQ 272
           +  ++ R    R   +  A  N++ E + E G+K +    P K+   E G    L++   
Sbjct: 246 EAFIVYR----RSAKEMPATPNEVEEAIAE-GVKMMTLCNPTKIFGDENGNVIGLQLQRM 410

Query: 273 ST---------------NSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 317
                            NSE  +E +   V+ AI ++  T      T G+ +N     + 
Sbjct: 411 ELGEKDSTGRSAPRPIPNSEFYVECDM--VIQAISQEVETET----TTGITLNPNH-TLT 569

Query: 318 VTDEEQTNVPYIYAIGD 334
           + D+ +TNV  IYA GD
Sbjct: 570 INDKYETNVKGIYACGD 620


>gb|AANW02000032.1| Entamoeba invadens IP1 gcontig_1105074721062, whole genome shotgun
             sequence
          Length = 82285

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 8/218 (3%)
 Frame = -3

Query: 141   KATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKT 193
             K  +  GKE +  A+  +IATG   R + +PG+  Y       C   D   ++P    K 
Sbjct: 80354 KLWDENGKEIL--AKSLIIATGATARRMKVPGEDIYWQNGVSACAICDG--AVPIFRNKV 80187

Query: 194   L-VVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV 252
             L VVG    A+E A  L   G  +      I+L   D   A+K    M+E  +   +  V
Sbjct: 80186 LMVVGGGDAAMEEAMHLTKFGSKI------IILHRRDSFRASKA---MQERVLNHPKVEV 80034

Query: 253   PIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEK 312
                   IE    G L   A+  N   ++ GE   V ++    A      ++ +  ++   
Sbjct: 80033 MWNSTLIELVGDGNLLNGAKVKN---VVTGEEKVVPISGLFYAIGHAPNVQFLNGQLKLT 79863

Query: 313   TGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAG 350
                    +E +T+V  ++A GD+ +       VA  +G
Sbjct: 79862 PEGYIEVNETKTSVDGVFAAGDVCDKVYRQAIVAAGSG 79749


>gb|AANW02001649.1| Entamoeba invadens IP1 gcontig_1105074715586, whole genome shotgun
            sequence
          Length = 6241

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 401  VYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLG 442
            V + Y +PLE+ +PS++  +C   I    ++N+     H +G
Sbjct: 3105 VNNVYIYPLEFAVPSKERKRCNFVITVYVRENDEFRVDHDMG 2980


>gb|AANW02000705.1| Entamoeba invadens IP1 gcontig_1105074709533, whole genome shotgun
            sequence
          Length = 14839

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/93 (22%), Positives = 42/93 (45%)
 Frame = -2

Query: 231  DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLA 290
            D   +IG++      K     +P ++ +I+A T  + R + + T  + +   E     L 
Sbjct: 4644 DCIKEIGQYAFASCEKLEHIVLPTRLVEIKAATFYKCRALREITIPQSVTRMEDICFSLC 4465

Query: 291  IGRDACTRKIGLETVGVKINEKTGKIPVTDEEQ 323
            +  ++ T    +  VG +     GK+P TDE++
Sbjct: 4464 VNLESVTLPSNIVFVGHEQFWNCGKLPKTDEKK 4366


>gb|AANW02003371.1| Entamoeba invadens IP1 gcontig_1105074717800, whole genome shotgun
            sequence
          Length = 2014

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 61   NVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVAL 120
            N GC PK  +H +  +GQ +        K+ +     W+  I+  +NH+  L W + +  
Sbjct: 1052 NSGCDPK*PLHFSRSIGQTIVR------KIHQKTSWTWNEKIKRKKNHVYCL-WSFGLVG 894

Query: 121  REK 123
            R K
Sbjct: 893  RSK 885


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 42,263,565
  Number of sequences in database:  6902
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,091,905
Number of Sequences: 6902
Number of extensions: 267011
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 385
length of query: 499
length of database: 14,087,855
effective HSP length: 106
effective length of query: 393
effective length of database: 13,356,243
effective search space: 5249003499
effective search space used: 5249003499
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
