TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: genome.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAFD02000023.1| Thalassiosira pseudonana CCMP1335 chromosome ...    27   2.1  
gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome ...    26   3.6  
gb|AAFD02000008.1| Thalassiosira pseudonana CCMP1335 chromosome ...    26   4.7  
gb|AAFD02000003.1| Thalassiosira pseudonana CCMP1335 chromosome ...    26   4.7  

>gb|AAFD02000023.1| Thalassiosira pseudonana CCMP1335 chromosome 13 THAPSchr_13_Cont23, whole
              genome shotgun sequence
          Length = 1052196

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
 Frame = -2

Query: 25     QPEHRRTWQFRG-------TIPQNPHLAPRFRPNVNDRYQIR 59
              QP HRR  QFR          P+NPHL P F P     +Q R
Sbjct: 909458 QPWHRRL-QFRH*H*GGSPLPPRNPHLQPTFLPTSQADHQRR 909336


>gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont4, whole
             genome shotgun sequence
          Length = 2234390

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 28    HRRTWQFRGT-IPQNPHLAPRFRPNV 52
             H R WQ RGT +P +P LA + +  +
Sbjct: 32938 HERRWQSRGTYLPNHPSLATKGKKEI 33015


>gb|AAFD02000008.1| Thalassiosira pseudonana CCMP1335 chromosome 4 THAPSchr_4_Cont8, whole
             genome shotgun sequence
          Length = 1132590

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 20    RERGIQPEHRRTWQFRGTIPQNPHLAPR 47
             ++RGI+P H R+ + R  +P +P +  R
Sbjct: 37169 QQRGIRPRHSRSIRLRLHVPSSPLVPSR 37086


>gb|AAFD02000003.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont3, whole
              genome shotgun sequence
          Length = 472755

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 34     FRGTIPQNPHLAPRFRPNV 52
              F  T+PQ+ H+AP   PN+
Sbjct: 451857 FHCTLPQSRHIAPPHHPNI 451801


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:14 PM
  Number of letters in database: 29,453,142
  Number of sequences in database:  113
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,167,245
Number of Sequences: 113
Number of extensions: 27851
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 53
length of query: 66
length of database: 9,817,714
effective HSP length: 41
effective length of query: 25
effective length of database: 9,813,081
effective search space: 245327025
effective search space used: 245327025
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
