TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: genome.fa 
           218 sequences; 41,633,360 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_8                                                             28   1.3  
scaffold_36                                                            27   2.3  
scaffold_10                                                            27   2.3  
scaffold_28                                                            26   5.1  
scaffold_23                                                            26   5.1  
scaffold_6                                                             26   5.1  
scaffold_4                                                             26   5.1  
scaffold_7                                                             26   6.6  
scaffold_5                                                             26   6.6  
scaffold_31                                                            25   8.6  

>scaffold_8 
          Length = 1300515

 Score = 28.1 bits (61), Expect = 1.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 35     RGTIPQNPHLAPRFRPNVNDRYQIRR 60
              +GT+P  P+L PR   NV    QIRR
Sbjct: 896539 KGTVPFTPYLGPRLEQNVWFVAQIRR 896462


>scaffold_36 
          Length = 406081

 Score = 27.3 bits (59), Expect = 2.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 20     RERGIQPEHRRTWQFRGTIPQNPHL 44
              ++ G Q   R+ WQ+R  +P  PHL
Sbjct: 126492 QQPGFQECSRKHWQWRTRVPHRPHL 126418


>scaffold_10 
          Length = 1258938

 Score = 27.3 bits (59), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 27     EHRRTWQFRGTIPQNPHLAPRFRP 50
              +HR  W+ +   P+ PH  PR RP
Sbjct: 848204 QHRHRWRQQRLHPRPPHRVPRARP 848133



 Score = 25.8 bits (55), Expect = 6.6
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
 Frame = -1

Query: 26     PEHRRTWQFRGTIPQNPHLAPR--------FRPNVNDRYQIRRG 61
              P H   WQ   ++P   H  PR        FRP V  R++IR G
Sbjct: 959748 PSHMACWQRPSSMP*AEHTTPRSPQTIILSFRPAV--RFKIRSG 959623


>scaffold_28 
          Length = 614053

 Score = 26.2 bits (56), Expect = 5.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 35     RGTIPQNPHLAPRFRPNVNDRYQIRRGRG 63
              RG  P  PHL+PR R     R + +R RG
Sbjct: 316600 RGKSPTLPHLSPRRRHRERARAREKRERG 316686


>scaffold_23 
          Length = 690264

 Score = 26.2 bits (56), Expect = 5.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 32     WQFRGTIPQNPHLAPRFRPNVNDR 55
              WQ RG  PQ+   APR RP+  DR
Sbjct: 135498 WQGRG--PQDRRDAPRARPSARDR 135563



 Score = 25.4 bits (54), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 37    TIPQN--PHLAPRFRPNVNDRYQIRRGRG 63
             ++P N  PH  P  RP+   R++ RRG G
Sbjct: 41984 SMPSNIHPHALPSGRPDHRSRHRHRRGSG 42070


>scaffold_6 
          Length = 1473069

 Score = 26.2 bits (56), Expect = 5.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 20     RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRG 63
              R R + P HRR  ++ G    +PH AP   P V    ++  G G
Sbjct: 384294 RPRCLHPHHRRCLRWNGQEGVHPHRAP--HPGVEGPGRVF*GHG 384169


>scaffold_4 
          Length = 2081438

 Score = 26.2 bits (56), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 28      HRRTWQFRGTIPQNPHLAPRFRPN 51
               HRR+W +   +P   H  PR  PN
Sbjct: 2045234 HRRSWAWYPCLPVALHFEPRREPN 2045163


>scaffold_7 
          Length = 1435906

 Score = 25.8 bits (55), Expect = 6.6
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -2

Query: 25     QPEHRRTWQFRGTIPQNPHLAPRF 48
              QPE    W   G  PQN HL PRF
Sbjct: 557061 QPEVSSIWLALGLYPQNAHL-PRF 556993


>scaffold_5 
          Length = 1613056

 Score = 25.8 bits (55), Expect = 6.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 18      ADRERGIQPEHRRTWQFRGTIPQNPH 43
               A R+   + + RRTW F+   P  PH
Sbjct: 1335394 APRDINDEQKRRRTWSFKSPPPPPPH 1335317


>scaffold_31 
          Length = 566198

 Score = 25.4 bits (54), Expect = 8.6
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
 Frame = -2

Query: 25     QPEHRRTWQFRG-----------TIPQNPHLAPRFRPNVNDRYQIRRGRGG 64
              QPE   TWQ                P +PH +   RPN     + RR  GG
Sbjct: 287677 QPESPLTWQCPSCKGQQHQYCPTNYPTSPHSSHPLRPNAPTASRARRPSGG 287525


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:06 PM
  Number of letters in database: 41,633,360
  Number of sequences in database:  218
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,776,219
Number of Sequences: 218
Number of extensions: 55123
Number of successful extensions: 543
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 236
length of query: 66
length of database: 13,877,786
effective HSP length: 41
effective length of query: 25
effective length of database: 13,868,848
effective search space: 346721200
effective search space used: 346721200
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)
