TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: genome.fa 
           306 sequences; 11,192,215 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AACB02000014.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    27   1.0  
gb|AACB02000006.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    26   1.4  
gb|AACB02000015.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    25   2.3  
gb|AACB02000013.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    23   8.8  
gb|AACB02000012.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    23   8.8  
gb|AACB02000010.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    23   8.8  

>gb|AACB02000014.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_14, whole genome shotgun
              sequence
          Length = 237218

 Score = 26.6 bits (57), Expect = 1.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 39     PQNPHLAPRFRPNVNDRYQIRRGRG 63
              P++ HL P  RPN   R  +RRGRG
Sbjct: 219762 PRSGHLRP-VRPNSRTR*HLRRGRG 219833


>gb|AACB02000006.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_6, whole genome shotgun
             sequence
          Length = 329365

 Score = 26.2 bits (56), Expect = 1.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 25    QPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQ 57
             +PE RR W  RG+    PHL    RPN+  RY+
Sbjct: 45057 KPE-RRCWITRGSSILGPHL----RPNIFQRYR 44974


>gb|AACB02000015.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_15, whole genome shotgun
              sequence
          Length = 231239

 Score = 25.4 bits (54), Expect = 2.3
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +3

Query: 28     HRRTWQFRGTIPQ--NPHLAPRFRPNVND-RYQIRRGR 62
              H+ TW  RGT PQ  +P L     P V   +  IRR R
Sbjct: 187788 HQETWSHRGTEPQRSSPALPSMTAPGVRSVKIPIRRLR 187901


>gb|AACB02000013.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_13, whole genome shotgun
              sequence
          Length = 266103

 Score = 23.5 bits (49), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 23     GIQPEHRRTWQFRGTIPQNPHLAPRFRP 50
              G+ P  +RT ++RG +      +PR RP
Sbjct: 218319 GLHPNRKRT*RYRGYLYPCTSQSPRRRP 218402


>gb|AACB02000012.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_12, whole genome shotgun
              sequence
          Length = 268442

 Score = 23.5 bits (49), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 28     HRRTWQFRGTIPQNPHL 44
              H +TW F+G  PQ+ +L
Sbjct: 196591 HCQTWHFQGLYPQSLYL 196541


>gb|AACB02000010.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_10, whole genome shotgun
             sequence
          Length = 274062

 Score = 23.5 bits (49), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 22    RGIQPEHRRTWQFRG 36
             RG  P HRR+W   G
Sbjct: 50260 RGTSPTHRRSWSSSG 50216


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:05 PM
  Number of letters in database: 11,192,215
  Number of sequences in database:  306
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 804,343
Number of Sequences: 306
Number of extensions: 9831
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 36
length of query: 66
length of database: 3,730,738
effective HSP length: 41
effective length of query: 25
effective length of database: 3,718,192
effective search space: 92954800
effective search space used: 92954800
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)
