TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # QUERY
         (223 letters)

Database: genome.fa 
           8 sequences; 8,358,125 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR940348.1| Theileria annulata strain Ankara isolate clone C...    66   6e-12
emb|CR940347.1| Theileria annulata strain Ankara isolate clone C...    55   1e-08
emb|CR940352.2| Theileria annulata strain Ankara isolate clone C...    39   0.001
emb|CR940353.1| Theileria annulata strain Ankara isolate clone C...    30   0.50 

>emb|CR940348.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
              PROGRESS ***
          Length = 1979170

 Score = 65.9 bits (159), Expect = 6e-12
 Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
 Frame = -1

Query: 39     FIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKY 98
              F+KF APW  HC+KM P W+SLA T +   +V +ADVD  T    L +++ +RGYPT+  
Sbjct: 773437 FVKFYAPWCSHCRKMAPAWESLAKTLKG--QVNVADVD-VTRNLNLGKRFQIRGYPTLLL 773267

Query: 99     FNPPDEEGEDYK---GGRSLDELKKFA 122
              F+    +G+ Y+   G R++++L +FA
Sbjct: 773266 FH----KGKMYQYEGGERTVEKLSEFA 773198



 Score = 27.7 bits (60), Expect = 1.9
 Identities = 24/94 (25%), Positives = 41/94 (43%)
 Frame = -2

Query: 25      DNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPL 84
               D++   +L+  K    KF A W   C+K KP  + L++   +   +   DVD       +
Sbjct: 1881048 DDYKATILQD-KLVLAKFSASWCKPCQKAKPVIEELSN---ELPHLNFIDVD-VDNLPQI 1880884

Query: 85      CEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDEL 118
                ++ GV+  P  K F          + G+ LDE+
Sbjct: 1880883 ADEEGVKTIPFFKLF----------RSGKLLDEV 1880812



 Score = 26.6 bits (57), Expect = 4.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 100    NPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDNCSEEQKGKLKE 148
              +PP  + E  +G  S+ E K +  NEL         DN  E+  G ++E
Sbjct: 997826 DPPQNQNEGVEGDESVLEQKSYDFNEL---------DNIQEDDLGSVEE 997945


>emb|CR940347.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
              PROGRESS ***
          Length = 2592520

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
 Frame = +3

Query: 20     IELTPDNFDELVLKSGKAAF-------------IKFLAPWUGHCKKMKPDWDSLASTFED 66
              ++LT  NFD LVL    + +             +KF APW GHCK ++P+W SL    + 
Sbjct: 768270 VQLTSSNFDSLVLDDTYSQWYFYSILMFIIIRLVKFYAPWCGHCKNLEPEWMSLP---KK 768440

Query: 67     SKKVLIADVDCTTGGKPLCEKYGV 90
              SK V +  VDCT   + LC ++ V
Sbjct: 768441 SKGVKVGRVDCTV-HQSLCSQFNV 768509



 Score = 25.4 bits (54), Expect = 9.4
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +3

Query: 141     EQKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLKELQATYKESMDKLEKLKEE 199
               E++ +  E   +  + + + ++  +KEL  A++ ++A  K+LQA   +   K+ +  E+
Sbjct: 1443363 EEEKRANEAKSLELKTKEDSVQQREKELTTAQAENDAKAKQLQADQDDLNAKMAQHTED 1443539


>emb|CR940352.2| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
              PROGRESS ***, 3 ordered pieces
          Length = 1898942

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +1

Query: 49     HCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGED 108
              HCK + P++   A   +D    ++        G  L E++ VRG+PT+ +F    E   +
Sbjct: 878194 HCKNLAPEYSKAAKMLKDENSDVVFAKVRNEEGVNLMERFNVRGFPTLYFFKSGTE--IE 878367

Query: 109    YKGGRSL 115
              Y G R +
Sbjct: 878368 YPGSRDV 878388



 Score = 35.4 bits (80), Expect = 0.009
 Identities = 22/108 (20%), Positives = 45/108 (41%)
 Frame = +2

Query: 20     IELTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTT 79
              +++   N  E +    K   +   AP   HCK   P +   A+  +D+  +++A  +   
Sbjct: 879446 VKVVVGNTLEKLFDLKKNVLLMIHAPHCQHCKNFLPVYQEFATVNKDNDSLIVATFNGDA 879625

Query: 80     GGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELG 127
                  + E+     +PT+ YF   +     + G R+ + L++F     G
Sbjct: 879626 NESSM-EEVNWDSFPTLLYFKAGERVPVKFAGERTAEGLREFVTQNGG 879766



 Score = 29.6 bits (65), Expect = 0.50
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 145    KLKEYIDMAPEKRTEMLETLKKELADAESTHEALLKELQATYKESMDKLEKLKEE 199
              K KE      EK+ EM +  K     AE    A+L++++   +   +KLEK KEE
Sbjct: 521727 KTKEQKLAEKEKKKEMKKKKKLSNEQAEKNQNAILEKMREKDRFLGEKLEKEKEE 521563


>emb|CR940353.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
              PROGRESS ***
          Length = 1842271

 Score = 29.6 bits (65), Expect = 0.50
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 147    KEYIDMAPEKRTEMLETLKKELADAESTHEALLKELQATYKESMDK 192
              +EY D  PEK+ +  +    +L D ES  E+ L E   T   S  K
Sbjct: 431820 REYEDSYPEKKLQSTQVHSSQLVDQESNDESELDETNYTRSLSSKK 431957



 Score = 28.5 bits (62), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 156    KRTEMLETLKKELADAESTHEALLKELQATYKESMDKLEKLKE 198
              K  EM ETL   +     T E + K++  T+K +++K +K  E
Sbjct: 358597 KILEMAETLDSVVNSVTGTAEKMKKDMVDTFKSALEKSDKATE 358469



 Score = 26.9 bits (58), Expect = 3.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -2

Query: 48     GHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGE 107
              G C +  P ++ LA    +   V + +VD     + L +KY V   PT K F     +GE
Sbjct: 433641 GPCMRFAPQFEELAKEHPNLVFVKV-NVDNL---QELAQKYNVTSLPTFKVFKSGQVQGE 433474



 Score = 26.2 bits (56), Expect = 5.5
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 40     IKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYF 99
              + F  P    C+ ++     +A T  D+K + + +V+ T     +CEK+ +   PT+   
Sbjct: 126135 VHFYRPTTSRCQYLESHLIKIAETHFDTKFIKV-NVEKTPY---ICEKFNIWCIPTVSTI 126302

Query: 100    NPP 102
              N P
Sbjct: 126303 NIP 126311



 Score = 25.4 bits (54), Expect = 9.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 154    PEKR--TEMLETLKKELADAESTHEALLKELQATYKESMDKLEKLKEES 200
              PE+R   +M ETL  E +   S+  + ++    +  +S +K EKL ++S
Sbjct: 838589 PEERGSRQMSETLGSEKSSEMSSERSSVRSSHKSSDKSSEKSEKLSDKS 838443


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 8,358,125
  Number of sequences in database:  8
  
Lambda     K      H
   0.312    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,412,593
Number of Sequences: 8
Number of extensions: 16778
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 50
length of query: 223
length of database: 2,786,041
effective HSP length: 87
effective length of query: 136
effective length of database: 2,785,345
effective search space: 378806920
effective search space used: 378806920
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
