TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # QUERY
         (223 letters)

Database: genome.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQX01000243.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    97   3e-21
gb|AAQX01000306.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    80   7e-16
gb|AAQX01000152.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    66   1e-11
gb|AAQX01000399.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    36   0.012
gb|AAQX01000432.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    29   1.1  
gb|AAQX01000019.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    29   1.1  
gb|AAQX01000458.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   4.3  
gb|AAQX01000245.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   5.6  
gb|AAQX01000345.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   7.3  
gb|AAQX01000342.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    27   7.3  
gb|AAQX01000357.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    26   9.5  
gb|AAQX01000355.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    26   9.5  
gb|AAQX01000156.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    26   9.5  

>gb|AAQX01000243.1| Phytophthora ramorum strain Pr102 Pramorum_Cont243, whole genome
             shotgun sequence
          Length = 234089

 Score = 97.4 bits (241), Expect = 3e-21
 Identities = 47/106 (44%), Positives = 66/106 (62%)
 Frame = +3

Query: 22    LTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGG 81
             LTPDNFD++V    K   +KF APW GHCK M P ++++A+ F+ +  V++A+VD     
Sbjct: 83637 LTPDNFDDVV-DGSKHVLVKFYAPWCGHCKSMAPTYETVATAFKKTSNVVVAEVDADQ-H 83810

Query: 82    KPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELG 127
             K L  K+GV G+PT+KYF     E E Y GGRS D+   F  ++ G
Sbjct: 83811 KDLGSKFGVTGFPTLKYFAAGTTEAEAYSGGRSEDDFINFLNDKAG 83948



 Score = 92.0 bits (227), Expect = 1e-19
 Identities = 45/112 (40%), Positives = 63/112 (56%)
 Frame = +3

Query: 22    LTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGG 81
             LT  +FD  V+ S K + ++F APW GHCK + P ++ + + FE    VLIA VD T   
Sbjct: 83991 LTDGDFDAEVIHSKKHSIVEFYAPWCGHCKSLAPTYEEVGAIFEGEDNVLIAKVDATENA 84170

Query: 82    KPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVD 133
             + L ++Y V+GYPT+ YF P  +E EDY  GR      +F     G   +VD
Sbjct: 84171 E-LAKRYNVKGYPTLFYFAPGADEPEDYSNGRDKASFVEFVNEHAGTHRTVD 84323


>gb|AAQX01000306.1| Phytophthora ramorum strain Pr102 Pramorum_Cont306, whole genome
             shotgun sequence
          Length = 60808

 Score = 79.7 bits (195), Expect = 7e-16
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
 Frame = +1

Query: 22    LTPDNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFED-SKKVLIADVDCTTG 80
             LT  NF E V        ++F APW GHCKK+ P++ + A   ++    + +A VD T  
Sbjct: 58054 LTESNFAEAV-SGHDTLLVEFYAPWCGHCKKLTPEYAAAAKNLKELDPPIRLAKVDATAE 58230

Query: 81    GKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSV 132
              K L E++ VRG+PT+K+F    E  +DY GGR+  E++K+   + GP   +
Sbjct: 58231 SK-LAEQFAVRGFPTLKFFKGDVEAVKDYDGGRTSAEIEKWVVKKSGPAVKI 58383



 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = +1

Query: 27    FDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCE 86
             F E V+ + K   ++F APW GHCK + P ++ LA  F D   V+IA +D T        
Sbjct: 59107 FQERVIDNEKDVLLEFYAPWCGHCKSLAPKYEELAEKFADVDSVMIAKMDATANEIDHA- 59283

Query: 87    KYGVRGYPTIKYFNPPDEEGE-DYKGGRSLDELKKF 121
                VRG+PT+ +F   D++    Y+G R +D   +F
Sbjct: 59284 GVDVRGFPTLIFFPAKDKQNPVVYEGARDVDGFTEF 59391


>gb|AAQX01000152.1| Phytophthora ramorum strain Pr102 Pramorum_Cont152, whole genome
             shotgun sequence
          Length = 144054

 Score = 65.9 bits (159), Expect = 1e-11
 Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
 Frame = +3

Query: 40    IKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYF 99
             ++F APW GHCKK++P ++++A+  +    V   DV   T    L +++G+RG+PT+ +F
Sbjct: 11040 VEFYAPWCGHCKKLEPIYETVANDLKGEVNVAKVDV---TANSELGKRFGIRGFPTVLHF 11210

Query: 100   NPPDEEGEDYK--GGRSLDELKKFA-------ENELGPGCSVDLMDNCSEEQKGKLKEYI 150
             +     G+ YK  G R+L+EL  FA       E E+  G +  L+D   ++      +++
Sbjct: 11211 S----HGKSYKFAGKRTLEELSAFARGGFKSVEGEVVSG-APSLVDFAKQQALDIKHDFV 11375

Query: 151   DMAPEKRTEMLET 163
              +   K+  +L T
Sbjct: 11376 TLLATKKNVLLVT 11414


>gb|AAQX01000399.1| Phytophthora ramorum strain Pr102 Pramorum_Cont399, whole genome
             shotgun sequence
          Length = 202332

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 5/153 (3%)
 Frame = -3

Query: 27    FDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCE 86
             F EL+ +  ++  + F A W G C+ + P +  L++ +      L  DVD     K +  
Sbjct: 73924 FKELINRGKRSVVVDFTATWCGPCRYISPVYHELSAKY-PCTLFLKVDVDEL---KSVSS 73757

Query: 87    KYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDN-----CSEE 141
               GV   PT ++F          +GG   DE++    N L        ++       SE 
Sbjct: 73756 GCGVTAMPTFQFF----------RGGVKCDEVRGADRNRLEARIQKHYVETEEAAAGSES 73607

Query: 142   QKGKLKEYIDMAPEKRTEMLETLKKELADAEST 174
              + +  + + +  E++ E L    +E + A  T
Sbjct: 73606 LRQRKPQVVTVTSEEQWEQLMQQNQESSRAVRT 73508



 Score = 33.1 bits (74), Expect = 0.078
 Identities = 37/182 (20%), Positives = 79/182 (43%), Gaps = 8/182 (4%)
 Frame = -3

Query: 27    FDELVLK---SGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKP 83
             F EL+ K   + ++  + F A W G C+ + P +  L++ +  S   L  DVD     K 
Sbjct: 76102 FKELINKGKTTKRSVVVDFTATWCGPCRYISPVYHELSAKYPCS-IFLKVDVDEL---KS 75935

Query: 84    LCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSVDLMDNCSEEQK 143
             +    GV   PT ++F          +GG   DE++         G   + ++ C ++  
Sbjct: 75934 VSSGCGVTAMPTFQFF----------RGGVKCDEVR---------GADKNALEACIQKHY 75812

Query: 144   GKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLKE-----LQATYKESMDKLEKLKE 198
              +    +++  +++  ++E        +++  E  L++     +  T +E  ++L +L +
Sbjct: 75811 VE----VELPDDEKPAVVEAAAAAGESSKANGEEGLRQRKPQVMTVTSEEQWEQLMQLNQ 75644

Query: 199   ES 200
             ES
Sbjct: 75643 ES 75638


>gb|AAQX01000432.1| Phytophthora ramorum strain Pr102 Pramorum_Cont432, whole genome
             shotgun sequence
          Length = 75042

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 49    HCKKMKPDWDSLASTFEDSKKVLIADV 75
             +CK  +P W +L   F+DS+ +L+A V
Sbjct: 71773 NCKVNRPKWVTLVPGFQDSRCILVASV 71853


>gb|AAQX01000019.1| Phytophthora ramorum strain Pr102 Pramorum_Cont19, whole genome shotgun
             sequence
          Length = 18834

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 84    LCEKYGVRGYPTIKYFNPPDEEGE 107
             LCEK+GV+  PT+ +FN   E+GE
Sbjct: 10873 LCEKFGVKTVPTLIFFN---EKGE 10935


>gb|AAQX01000458.1| Phytophthora ramorum strain Pr102 Pramorum_Cont458, whole genome shotgun
              sequence
          Length = 219070

 Score = 27.3 bits (59), Expect = 4.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 102    PDEEGEDYKGGRSLDELKKFAENELGPGCSVD 133
              P+  GEDY GG+ +DE+    +++   G   D
Sbjct: 125001 PEYNGEDYDGGQWVDEIDDLDDSDADEGFGDD 124906


>gb|AAQX01000245.1| Phytophthora ramorum strain Pr102 Pramorum_Cont245, whole genome shotgun
              sequence
          Length = 174567

 Score = 26.9 bits (58), Expect = 5.6
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +1

Query: 157    RTEMLETLKKELADAESTHEALLKELQATYKESMD 191
              +TEM    +K++ +  S+H + ++EL+ TY+  ++
Sbjct: 151093 KTEMENEYQKKMREMASSHRSEVQELKTTYEAKVE 151197


>gb|AAQX01000345.1| Phytophthora ramorum strain Pr102 Pramorum_Cont345, whole genome
             shotgun sequence
          Length = 52462

 Score = 26.6 bits (57), Expect = 7.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 142   QKGKLKEYIDMAPEKRTEMLETLKKELADAESTHEALLKELQATYK 187
             QK  +     +A    +E+LET +K+LAD       L  E  +T+K
Sbjct: 40974 QKASISRGASLAKATTSELLETKRKKLADRVVARFHLDTETGSTFK 41111


>gb|AAQX01000342.1| Phytophthora ramorum strain Pr102 Pramorum_Cont342, whole genome
             shotgun sequence
          Length = 58972

 Score = 26.6 bits (57), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 64    FEDSKKVLIADVDCTTGGKPLC 85
             F+++K + I DVDC  G   LC
Sbjct: 20948 FKENKSIFIEDVDCDEGIPDLC 21013


>gb|AAQX01000357.1| Phytophthora ramorum strain Pr102 Pramorum_Cont357, whole genome
           shotgun sequence
          Length = 3397

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 85  CEKYGVRGYPTIKYFNPPDEEG 106
           C   GVR +   KY  PPD+ G
Sbjct: 81  CNTSGVRSFQAGKYIGPPDDFG 146


>gb|AAQX01000355.1| Phytophthora ramorum strain Pr102 Pramorum_Cont355, whole genome
             shotgun sequence
          Length = 31568

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 85    CEKYGVRGYPTIKYFNPPDEEG 106
             C   GVR +   KY  PPD+ G
Sbjct: 23339 CNTSGVRSFQAGKYIGPPDDFG 23404


>gb|AAQX01000156.1| Phytophthora ramorum strain Pr102 Pramorum_Cont156, whole genome
             shotgun sequence
          Length = 96856

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +1

Query: 33    KSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADV 75
             +S + +  + +  W GHCK++K +  +L      S   ++  V
Sbjct: 82747 RSQRRSSSRTMRRWHGHCKRLKSELHALLVAMNSSNSYILTFV 82875


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:07 PM
  Number of letters in database: 14,903,514
  Number of sequences in database:  572
  
Lambda     K      H
   0.312    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,198,633
Number of Sequences: 572
Number of extensions: 46372
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 97
length of query: 223
length of database: 4,967,838
effective HSP length: 91
effective length of query: 132
effective length of database: 4,915,786
effective search space: 648883752
effective search space used: 648883752
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
