TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= (189 letters) Database: genome.fa 8 sequences; 8,358,125 total letters Searching........done Score E Sequences producing significant alignments: (bits) Value emb|CR940347.1| Theileria annulata strain Ankara isolate clone C... 28 0.85 emb|CR940353.1| Theileria annulata strain Ankara isolate clone C... 27 3.2 emb|CR940348.1| Theileria annulata strain Ankara isolate clone C... 26 5.5 emb|CR940352.2| Theileria annulata strain Ankara isolate clone C... 25 9.4 >emb|CR940347.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN PROGRESS *** Length = 2592520 Score = 28.5 bits (62), Expect = 0.85 Identities = 14/41 (34%), Positives = 26/41 (63%) Frame = -1 Query: 101 KEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSP 141 +EK + EE K+R+K++ D ++ ++ K KKP+ +D P Sbjct: 1834873 QEKEGKKEETKKRKKVDDTDDEEQKETEK--KKKPKHQDKP 1834757 Score = 28.5 bits (62), Expect = 0.85 Identities = 16/70 (22%), Positives = 36/70 (51%) Frame = +2 Query: 87 LKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTS 146 +K E+ + ++H+E+ ++EEE+++Q+++ K N +K ++E Sbjct: 2128805 MKRTSEIYQRRQEHQEEQMRVEEERKKQELQQ----------KINEEKAEKERREEAFRQ 2128954 Query: 147 SVLKRKSDRK 156 L+RK D + Sbjct: 2128955 LELQRKKDER 2128984 Score = 28.1 bits (61), Expect = 1.1 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = +3 Query: 57 ALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEE-KRRQK 115 A + Q +R A E + KRQE R + Q+EL+ ++ K+K + EE RQK Sbjct: 1443810 AQEKEQRERERKAEEQQLAQKRQEHEEQIR-RSQQELDQKIADDKKKTAEAEERINHRQK 1443986 Score = 25.4 bits (54), Expect = 7.2 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = -3 Query: 118 MWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWR 177 +W+S Q GKS+ N P PG S+ + L+ Y L G +C+WR Sbjct: 1830767 IWESSQ-GKSFLCNKTTP----GPGRSS*GFHDIYTFLSRLKCNSYIHL----GNSCTWR 1830615 Query: 178 PG 179 PG Sbjct: 1830614 PG 1830609 >emb|CR940353.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN PROGRESS *** Length = 1842271 Score = 26.6 bits (57), Expect = 3.2 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Frame = -1 Query: 157 PLRGGGYNPLSGEGGGACSWRPGRRG---PSSGG 187 PL GGG PL GG +PG G P GG Sbjct: 1117009 PLLGGGKGPLPFSNGGPFLPKPGGGGAFLPDGGG 1116908 Score = 25.4 bits (54), Expect = 7.2 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = -3 Query: 90 QEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGK 126 +E+L+ +VEK K K EEEKRR EM M++ K Sbjct: 662513 EEKLHKKVEKSKVK----EEEKRR---EMTSKMEKRK 662424 Score = 25.4 bits (54), Expect = 7.2 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = -2 Query: 82 LAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAK 133 L R +M E+ V E +++ +EEK + E+W K GN K Sbjct: 564063 LETDRYRMMEKEEPVVNPIPEMIEEKQEEKLPFESEVWTLRDFVKKMNGNLK 563908 >emb|CR940348.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN PROGRESS *** Length = 1979170 Score = 25.8 bits (55), Expect = 5.5 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = -2 Query: 87 LKMQEELNAQVEKHKEK----LKQLEEEKRRQKIE 117 LKM++ELN V+ H E+ LKQL + KI+ Sbjct: 1916100 LKMEKELNHNVQIHLEEFATHLKQLNKVMNNLKIQ 1915996 Score = 25.8 bits (55), Expect = 5.5 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = -2 Query: 87 LKMQEELNAQVEKHKEK----LKQLEEEKRRQKIE 117 LKM++ELN V+ H E+ LKQL + KI+ Sbjct: 1915926 LKMEKELNHNVQIHLEEFATHLKQLNKVMNNLKIQ 1915822 Score = 25.8 bits (55), Expect = 5.5 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = -1 Query: 94 NAQVEKHKEKLKQLEEEKRRQKIEMWDSMQE-GKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 N ++ K + EE++R +IE + Q G + K ++ +P P L+RK Sbjct: 1561636 NLELPVSGPKFQSQLEERKRSRIETFQRTQHCGTRLETRPLKSRKSSTPQPKA---LRRK 1561466 Query: 153 SD---RKPLRGGGYNPLSGEGGGACSWR 177 + R+P R G P S SW+ Sbjct: 1561465 LNSPFRRPTRSKGSCP*SDLRCSNGSWK 1561382 >emb|CR940352.2| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces Length = 1898942 Score = 25.0 bits (53), Expect = 9.4 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%) Frame = +1 Query: 88 KMQEELNAQVEKH------KEKLKQLEEEKRRQKIEMWDS 121 + + E++ + KH +E +++ KRR + + WDS Sbjct: 433177 RQRNEISKHISKHGISKEVEEAIEETRRSKRRSQRDRWDS 433296 Database: genome.fa Posted date: Jan 19, 2010 5:09 PM Number of letters in database: 8,358,125 Number of sequences in database: 8 Lambda K H 0.316 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,252,931 Number of Sequences: 8 Number of extensions: 14063 Number of successful extensions: 124 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 103 length of query: 189 length of database: 2,786,041 effective HSP length: 85 effective length of query: 104 effective length of database: 2,785,361 effective search space: 289677544 effective search space used: 289677544 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)