TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= (189 letters) Database: genome.fa 113 sequences; 29,453,142 total letters Searching........................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAFD02000010.1| Thalassiosira pseudonana CCMP1335 chromosome ... 40 0.001 gb|AAFD02000026.1| Thalassiosira pseudonana CCMP1335 chromosome ... 33 0.085 gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335 chromosome ... 33 0.085 gb|AAFD02000001.1| Thalassiosira pseudonana CCMP1335 chromosome ... 33 0.085 gb|AAFD02000023.1| Thalassiosira pseudonana CCMP1335 chromosome ... 33 0.11 gb|AAFD02000008.1| Thalassiosira pseudonana CCMP1335 chromosome ... 32 0.19 gb|AAFD02000003.1| Thalassiosira pseudonana CCMP1335 chromosome ... 32 0.25 gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335 chromosome ... 32 0.32 gb|AAFD02000011.1| Thalassiosira pseudonana CCMP1335 chromosome ... 30 0.94 gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome ... 30 1.2 gb|AAFD02000002.1| Thalassiosira pseudonana CCMP1335 chromosome ... 30 1.2 gb|AAFD02000013.1| Thalassiosira pseudonana CCMP1335 chromosome ... 29 1.6 gb|AAFD02000035.1| Thalassiosira pseudonana CCMP1335 chromosome ... 29 2.1 gb|AAFD02000057.1| Thalassiosira pseudonana CCMP1335 THAPS_bd_13... 28 2.7 gb|AAFD02000009.1| Thalassiosira pseudonana CCMP1335 chromosome ... 28 3.6 gb|AAFD02000066.1| Thalassiosira pseudonana CCMP1335 THAPS_bd_19... 28 4.7 gb|AAFD02000012.1| Thalassiosira pseudonana CCMP1335 chromosome ... 28 4.7 gb|AAFD02000030.1| Thalassiosira pseudonana CCMP1335 chromosome ... 27 6.1 gb|AAFD02000019.1| Thalassiosira pseudonana CCMP1335 chromosome ... 27 6.1 gb|AAFD02000006.1| Thalassiosira pseudonana CCMP1335 chromosome ... 27 6.1 gb|AAFD02000113.1| Thalassiosira pseudonana CCMP1335 THAPS_bd_37... 27 8.0 gb|AAFD02000033.1| Thalassiosira pseudonana CCMP1335 chromosome ... 27 8.0 gb|AAFD02000024.1| Thalassiosira pseudonana CCMP1335 chromosome ... 27 8.0 gb|AAFD02000015.1| Thalassiosira pseudonana CCMP1335 chromosome ... 27 8.0 >gb|AAFD02000010.1| Thalassiosira pseudonana CCMP1335 chromosome 6 THAPSchr_6_Cont10, whole genome shotgun sequence Length = 2071480 Score = 39.7 bits (91), Expect = 0.001 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Frame = -3 Query: 68 AAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKS 127 A +E + K+ EA A K +EE A+ ++ E+ + + EKRR E D + + Sbjct: 738920 ACIEDEAKKKKLEARRIANAKKKEE-EAERQRILEEKRVAQAEKRRIAAE--DKKKVAAA 738750 Query: 128 YKGN-----AKKPQEEDSPGPSTSSVLKRKSDRKP 157 K + A P+EE SP PS +SV KR R P Sbjct: 738749 AKVDRARLAALNPKEEKSPSPSRTSVRKRGPGRPP 738645 Score = 33.5 bits (75), Expect = 0.085 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Frame = -3 Query: 51 LSARLRALRQRQLDRAAAAVEPDVVVKR---QEALAAARLKMQEELNAQVEKHKEKLKQL 107 + R+RAL +++ +A A+E + ++KR QE A L ++EE ++K KQ Sbjct: 892421 IKERVRALEEKR--KAELAIEEEKLLKRMRVQEEKRKADLAIKEE-------KRQKRKQA 892269 Query: 108 EEEKRRQKIEMWDSMQEGKSYKGNA 132 +EEK + E W + +E + + A Sbjct: 892268 QEEKWNAEQEKWRARREERLQRKRA 892194 Score = 27.7 bits (60), Expect = 4.7 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = +3 Query: 95 AQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLK--RK 152 A E EK KQ EEEK RQKI+ E + + P ++ P V+ Sbjct: 647541 AAAESELEK-KQREEEKHRQKIQKKKQEMEASQSRITSPLPPKDVQPNEKGERVVTVYST 647717 Query: 153 SDRKPLRG 160 +D+ L G Sbjct: 647718 TDKNDLTG 647741 >gb|AAFD02000026.1| Thalassiosira pseudonana CCMP1335 chromosome 15 THAPSchr_15_Cont26, whole genome shotgun sequence Length = 668626 Score = 33.5 bits (75), Expect = 0.085 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%) Frame = -2 Query: 119 WDSMQE--GKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSG-----EGG 171 WD + G Y ++ +P D P + R +DR+ GGGY+ SG G Sbjct: 624693 WDDTDDFGGDEYGSSSFEPYVYDKPSSNNRGRGSRNNDRRRDGGGGYDRRSGGRDSFGRG 624514 Query: 172 GACSWRPGRRGPSSG 186 G R GR G S G Sbjct: 624513 GDRPRREGRGGRSEG 624469 Score = 33.5 bits (75), Expect = 0.085 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 10/102 (9%) Frame = -1 Query: 94 NAQVEKHKEKLKQLEEEK-RRQKIEMWDSMQEGKSY-KGNAKKPQEEDSPGPSTSSVLKR 151 +++ +K K+L E +R+ IE S EG+ + ++ D G ++R Sbjct: 320218 DSKTSTDNDKAKKLTESSGQRRNIERKPSRGEGRGRGRDGGERNDRRDGDGGRREGGIQR 320039 Query: 152 KSDRKPLRGGGYNPLSGE--------GGGACSWRPGRRGPSS 185 K R RG G +GE GGG GRRG S+ Sbjct: 320038 KPSRGEGRGRGERTRNGERSGGVGGGGGGRNGKEAGRRGSST 319913 Score = 31.6 bits (70), Expect = 0.32 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = +1 Query: 49 QKLSARLRAL---RQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLK 105 + L A LR + + QLD+ A+ + ++ R E AAA + EL H E+L+ Sbjct: 447703 KSLEAELRKVSGSQSEQLDQLVASHKEEIARVRSETEAAASQSLDAELQKLTASHAEELE 447882 Query: 106 QLEEE 110 +L+ + Sbjct: 447883 KLKSD 447897 Score = 31.6 bits (70), Expect = 0.32 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = +1 Query: 55 LRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEE 110 + + + QLD+ A+ + ++ R E AAA + EL H E+LK+L+ + Sbjct: 448294 MNSSQAEQLDQLVASHKEEIARVRSETEAAASQSLDAELQKLTASHAEELKKLKSD 448461 Score = 30.8 bits (68), Expect = 0.55 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +1 Query: 53 ARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEE 110 A + + + QLD+ A+ + ++ R E AAA + EL H E+L++L+ + Sbjct: 448852 AMVNSSQAEQLDQLVASHKEEIARVRSETEAAASQSLDAELQKLTASHAEELEKLKSD 449025 Score = 30.4 bits (67), Expect = 0.72 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 10/83 (12%) Frame = -2 Query: 66 AAAAVEPDVVVKRQE--ALAAARLKMQE-----ELNAQVE---KHKEKLKQLEEEKRRQK 115 A A + + KR+E A AAR+K +E E AQ E K +E+ ++L +E+ RQ+ Sbjct: 363246 AKKAKDEAIAKKREEDEAAEAARVKEEEERFEMEKVAQEEARKKEEEEREKLAQEEARQR 363067 Query: 116 IEMWDSMQEGKSYKGNAKKPQEE 138 +E + + K ++ KK EE Sbjct: 363066 VEAEERAR--KEFEDRQKKEAEE 363004 Score = 30.0 bits (66), Expect = 0.94 Identities = 16/58 (27%), Positives = 33/58 (56%) Frame = +1 Query: 100 HKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKP 157 HK+K+K+LEE+ +++ + +++ K K +A+ E D + K+K ++KP Sbjct: 417331 HKQKVKELEEQMKKRVEDGTKELEDFK--KKSAELEGEGDGDKKPAADAPKKKKNQKP 417498 Score = 28.5 bits (62), Expect = 2.7 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 8/70 (11%) Frame = +1 Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVK--------RQEALAAARLKMQEELNAQVEKH 100 +KL + L + Q + A +A+ ++ K + E LA + E+L H Sbjct: 447880 EKLKSDLESSSSEQREEAISAITNELKEKHMTELERVKSEVLAMSNSSQSEQLEQLAASH 448059 Query: 101 KEKLKQLEEE 110 KEKL ++ E Sbjct: 448060 KEKLARVRTE 448089 Score = 26.9 bits (58), Expect = 8.0 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 1/111 (0%) Frame = +1 Query: 51 LSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLK-MQEELNAQVEKHKEKLKQLEE 109 + A + L +R ++A ++ +V K E + + M+ E NAQ+EK K ++K + Sbjct: 424573 IEAEVIDLNRRGKAKSANHLKLQIVDKWSELRKIQKKREMEAEENAQIEKRKSRMKSELD 424752 Query: 110 EKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRG 160 +D +E +S NA ++ G T S+ R + + RG Sbjct: 424753 ---------YDRWRERRSLLRNAPVTEQR---GLLTGSITSRGRELQTPRG 424869 >gb|AAFD02000005.1| Thalassiosira pseudonana CCMP1335 chromosome 3 THAPSchr_3_Cont5, whole genome shotgun sequence Length = 2440052 Score = 33.5 bits (75), Expect = 0.085 Identities = 26/93 (27%), Positives = 41/93 (44%) Frame = -2 Query: 62 QLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDS 121 +LDRAAA +E D +QE + + E+ A H+ L+QL+E EM Sbjct: 1410616 ELDRAAARMERDRSRHKQEK-ESHDASHKAEIAALTSAHERALQQLKESNESTLAEM--- 1410449 Query: 122 MQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSD 154 EG+ + ++ QE + L R+ D Sbjct: 1410448 --EGRVMRAEQQRAQEGGERDADLAEALNRERD 1410356 Score = 29.3 bits (64), Expect = 1.6 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = +2 Query: 64 DRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEE 110 D A AVE +VK +EAL A L+ +++ VE K+ + +LEEE Sbjct: 342092 DSTAEAVES--IVKDEEALDADLLQEEKDEIKSVEDTKKLISELEEE 342226 Score = 29.3 bits (64), Expect = 1.6 Identities = 13/52 (25%), Positives = 30/52 (57%) Frame = -1 Query: 91 EELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPG 142 E+ + ++ ++ K+ +E+++RQK WD + ++ K ++K E+S G Sbjct: 2074736 EDKEEEEKRRQQAQKEYDEKRQRQKKNRWDKSVD-RANKTSSKNSTSEESAG 2074584 Score = 29.3 bits (64), Expect = 1.6 Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 3/80 (3%) Frame = -1 Query: 62 QLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQ---VEKHKEKLKQLEEEKRRQKIEM 118 +L++AA+ E + EA AAA+ K+QEE A+ + +E+ +Q E E+ + + Sbjct: 1526591 RLEKAASEQEK----RDAEARAAAQKKLQEEKEARSAAQRQREEQYRQQEAERMKMARKQ 1526424 Query: 119 WDSMQEGKSYKGNAKKPQEE 138 + +++ K + A++ + E Sbjct: 1526423 AEELRQKKEAEAAAERARLE 1526364 Score = 27.3 bits (59), Expect = 6.1 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 81 ALAAARLKMQEELNAQVEKHKEKLKQLEEEKR 112 AL ARLK ++ L + H K QLEE KR Sbjct: 1828946 ALTGARLKAEDLLYTGIATHYVKSDQLEELKR 1828851 Score = 27.3 bits (59), Expect = 6.1 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 14/67 (20%) Frame = -1 Query: 135 PQEEDSPGPSTSSV----------LKRKSDRKPLRGGGYNPL----SGEGGGACSWRPGR 180 P+ E++P P + S R R GG+ + + GGG WR G Sbjct: 906446 PRSEEAPAPPSHSPRFASHFLIGPCIRSDCGSARRRGGWGEIRMVDARRGGGWSCWRRGC 906267 Query: 181 RGPSSGG 187 RG SGG Sbjct: 906266 RGRRSGG 906246 Score = 27.3 bits (59), Expect = 6.1 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Frame = +2 Query: 104 LKQLEE-----EKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPL 158 LK+ EE +K++ ++ ++ +G+ + ++E+ G +T+ ++K+ R+ Sbjct: 2088905 LKEREEGEKKSKKKKSRVGYAPTVDDGEEEDDTPSESEDEEMDGAATAGGTRKKTARE-- 2089078 Query: 159 RGGGYNPLSGEGGGACSWRPGRR 181 L E GG W P R Sbjct: 2089079 -------LMWENGGPGVWAPDYR 2089126 Score = 26.9 bits (58), Expect = 8.0 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +1 Query: 51 LSARLRALRQRQLDRAAA--AVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLE 108 + ++R+L ++Q ++ A A + + KR+E K + EL + E+ K KL + Sbjct: 1350601 IKEKVRSLEEKQEEKRKAELATKEEKRQKREE-------KRKAELAIKEERQKRKL--AQ 1350753 Query: 109 EEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138 EEK + + E W + + + K+ EE Sbjct: 1350754 EEKWKAEGEKWKAESAIREERLQMKRALEE 1350843 >gb|AAFD02000001.1| Thalassiosira pseudonana CCMP1335 chromosome 1 THAPSchr_1_Cont1, whole genome shotgun sequence Length = 358902 Score = 33.5 bits (75), Expect = 0.085 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Frame = -1 Query: 130 GNAKKPQEEDSPGPSTSSVLKRKSDRKPLR--GGGYNP-----LSGEGGGACSWRPGRRG 182 GN P +E SPG S L + +P R GGGY + G GGG R RG Sbjct: 10206 GNRYSPLDE-SPGSVWDSTLSQDDSNRPHRDNGGGYGTSQRREVYGRGGGRGRGRGQHRG 10030 Query: 183 PSS 185 PS+ Sbjct: 10029 PST 10021 >gb|AAFD02000023.1| Thalassiosira pseudonana CCMP1335 chromosome 13 THAPSchr_13_Cont23, whole genome shotgun sequence Length = 1052196 Score = 33.1 bits (74), Expect = 0.11 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = +1 Query: 54 RLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNA----QVEKHKEKLKQLEE 109 RL R QL++ E ++ + A A+L Q+ L A ++E +++LKQ+EE Sbjct: 585427 RLEKERNEQLEKKRVVAEEYARIESERLEAEAKLAEQQRLQALESNRLEAEQQRLKQIEE 585606 Query: 110 EK 111 E+ Sbjct: 585607 ER 585612 Score = 28.1 bits (61), Expect = 3.6 Identities = 17/68 (25%), Positives = 36/68 (52%) Frame = +2 Query: 71 EPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKG 130 E + + + ++L ++ + NA +EK K+ LEEE + Q E+ D +Q+ + + Sbjct: 172502 EKEDIERNSQSLMMQVTAIESDYNATIEKLTCKISSLEEELKLQS-EINDILQKKAAEQS 172678 Query: 131 NAKKPQEE 138 + K +E+ Sbjct: 172679 SQKHLEEQ 172702 Score = 27.7 bits (60), Expect = 4.7 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Frame = +3 Query: 160 GGGYNPLSGEGG-GACSWRPGRRGPSSGG 187 GGG N SG GG G SW +RG G Sbjct: 445665 GGGGNTTSGSGGSGIASWGVAKRGQCGHG 445751 >gb|AAFD02000008.1| Thalassiosira pseudonana CCMP1335 chromosome 4 THAPSchr_4_Cont8, whole genome shotgun sequence Length = 1132590 Score = 32.3 bits (72), Expect = 0.19 Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 20/144 (13%) Frame = -3 Query: 66 AAAAVEPDVVVKRQEALAAARLKMQEELNA------QVEKHKEKLKQLEEEKRRQKIEM- 118 AAA+ + V+ EA AAA + N Q EK ++K K+ E + K E+ Sbjct: 172711 AAASSSSQLAVQSGEAAAAAAQPNDDTANTTTNTPEQSEKKRKKTKKAESDISEAKFELP 172532 Query: 119 -------WDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPL---RGGGYNPLSG 168 DS + + AK + + K+++D K +GG SG Sbjct: 172531 SHLVPLESDSQAQKLKKQRTAKALKSKFREKQKEMVAAKKQNDWKSFAMKKGGKKKAASG 172352 Query: 169 EGGGACSWRPG---RRGPSSGG*G 189 GG S G R G SGG G Sbjct: 172351 GGGSIFSTEEGVNARVGVISGGGG 172280 Score = 28.9 bits (63), Expect = 2.1 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Frame = -1 Query: 49 QKLSARLRALRQRQLD--RAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQ 106 Q+L+ R +A + + D R V D++ K + + MQEE +A +E+ + + + Sbjct: 775809 QELAERQQAAEEERQDLLRRLEDVRADMIDK----INTQQKIMQEEKDAYLEEQNDIIAE 775642 Query: 107 LEEEKRRQKIEMWDSMQEGKSYKGNAKK 134 EEE RR I++ S+++ + G KK Sbjct: 775641 SEEECRRAWIDL-ASLKKRLNDAGEEKK 775561 Score = 28.9 bits (63), Expect = 2.1 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +1 Query: 94 NAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAK 133 N +EK +E+LK+ EEE +RQ +DS + YK N + Sbjct: 729658 NVAIEKVEEQLKEKEEEAQRQ---YYDSDESEDYYKMNLR 729768 >gb|AAFD02000003.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont3, whole genome shotgun sequence Length = 472755 Score = 32.0 bits (71), Expect = 0.25 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = +2 Query: 66 AAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEG 125 A ++ P+ +EA+ AAR + +K +K+ + EKRR KI+ D + Sbjct: 229016 AKKSMTPEEATAAREAVKAAR-----------KANKLAVKEAQSEKRRTKIKKKDKQKAI 229162 Query: 126 KSYKGNAKK 134 KGN KK Sbjct: 229163 NKTKGNKKK 229189 >gb|AAFD02000036.1| Thalassiosira pseudonana CCMP1335 chromosome 20 THAPSchr_20_Cont36, whole genome shotgun sequence Length = 621618 Score = 31.6 bits (70), Expect = 0.32 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Frame = +3 Query: 64 DRAAAAVEPDVVVKRQEALAAARLKMQEELN------AQVEKHKEKLKQLEEEK----RR 113 D + V+ DV K+ A+ K + + N ++ K+ ++Q E++ R Sbjct: 563121 DASDEEVDDDVKAKKTGAMDEFAKKTESKANNSNGNGGATKRRKKLIEQTVEDENGYLRT 563300 Query: 114 QKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGG 171 + + +W+ + +G++ +KP+ + + S SS K GGG N SG+GG Sbjct: 563301 ETVTVWEEIADGEAV---VEKPKVKPAVKSSGSSA-------KSGGGGGANKGSGKGG 563444 >gb|AAFD02000011.1| Thalassiosira pseudonana CCMP1335 chromosome 8 THAPSchr_8_Cont11, whole genome shotgun sequence Length = 1267198 Score = 30.0 bits (66), Expect = 0.94 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 8/126 (6%) Frame = -3 Query: 66 AAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKR-RQKIEMWDSMQE 124 +A A D + +EAL + +EEL E+ + Q+EE +R ++++ + Sbjct: 261593 SAEAAWQDAIFSEKEALQREAQEAREELLRAQEEAQRMESQMEERRRMKRRVTSERGTMQ 261414 Query: 125 GKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGG-------GYNPLSGEGGGACSWR 177 G +G + + + K + L+GG G + GGG+ Sbjct: 261413 GDVRQGTTMEERLRMRKERKADEAERIKDELTRLQGGNVGEGASGTAVAAAGGGGSTKQN 261234 Query: 178 PGRRGP 183 P R P Sbjct: 261233 PAARTP 261216 Score = 28.9 bits (63), Expect = 2.1 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1 Query: 62 QLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEE 110 +L+R + + D +K++EA AA LK E+ A KEKLK+ E+ Sbjct: 526807 ELERLIQSNQVDATMKQEEA--AALLKNTEKARAAETLRKEKLKKAVED 526947 >gb|AAFD02000004.1| Thalassiosira pseudonana CCMP1335 chromosome 2 THAPSchr_2_Cont4, whole genome shotgun sequence Length = 2234390 Score = 29.6 bits (65), Expect = 1.2 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%) Frame = -3 Query: 50 KLSARLRALRQRQLDRAAAAVEPDVVVKR----QEALAAARLKMQEELNAQVEKHKEKLK 105 KL A + L+Q +D + + D++ K QE L ++ E Q EK E +K Sbjct: 1106973 KLDALEKRLKQASID--SDDDDEDLIQKEKRKEQERLKKLGIERAERERIQAEKMAE-MK 1106803 Query: 106 QLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138 EEE+ R+K+ + +EGK + +K E Sbjct: 1106802 AEEEEEDRKKMLVAQKREEGKKRRLQIEKANLE 1106704 Score = 28.9 bits (63), Expect = 2.1 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = -2 Query: 141 PGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGG 187 P P +SS R ++ P GY S GG A GRRGP G Sbjct: 1802968 PQPHSSSHHYRPAN-PPSMSSGYGRSSTSGGNATGHNGGRRGPKKFG 1802831 Score = 28.5 bits (62), Expect = 2.7 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 9/130 (6%) Frame = +3 Query: 20 RFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQ 79 +F H T+ L+ + W I+ + L VF L+ R+ +L +++P+ VK + Sbjct: 81423 KFCHNTMAQELSVFRWRIILPYLAL--VFVVLA------RELKLFTTTPSLDPNTTVKNE 81578 Query: 80 EALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQE----GKSY-----KG 130 A A + V H K EMW ++ +Y KG Sbjct: 81579 HAAVA--------VGGSVSSH----PACSHFKTSSMSEMWQNIHGSIILNSTYIPDQPKG 81722 Query: 131 NAKKPQEEDS 140 N +EED+ Sbjct: 81723 NTNTSREEDA 81752 Score = 27.7 bits (60), Expect = 4.7 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Frame = -3 Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHK------- 101 +K A L +++ R A E + + LA K +++ Q EK K Sbjct: 1973484 EKRKAELAIKEEKRQKRKRAQEEKWKANQEKAELAIKEAKRLKQMRVQEEKQKADLAVKE 1973305 Query: 102 -EKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138 +K K+ +EEK + + E W + + K + + EE Sbjct: 1973304 GQKRKRAQEEKWKAEQEKWKAERVIKEARLKRMRALEE 1973191 >gb|AAFD02000002.1| Thalassiosira pseudonana CCMP1335 chromosome 1 THAPSchr_1_Cont2, whole genome shotgun sequence Length = 2672327 Score = 29.6 bits (65), Expect = 1.2 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -3 Query: 63 LDRAAAAVEPDVVVKRQEALAAARLK-MQEELNAQVEKHKEKLKQLEEEKRRQKIE 117 +D A AA P+ K+++A + M +E + VEK KEKLK + + KI+ Sbjct: 1699581 MDTATAAPSPEKKKKKKKASYKNMMAGMMQESSRDVEKEKEKLKAVTGGGKFSKID 1699414 Score = 29.3 bits (64), Expect = 1.6 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Frame = +3 Query: 53 ARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKE--KLKQLEEE 110 +R+R+ + A++V+ D + + + ++ + L ++ K K L + Sbjct: 1959021 SRIRSASVNAFKKRASSVQGD---RDENTIDTSKKSTRSSLTQRMHKVKNFRSLSRGRFS 1959191 Query: 111 KRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGG 161 R D+ E + +ED S SS+LKR S +KP+ G Sbjct: 1959192 SRDDSDARSDTKSESFAMHNTPAWATDEDDEKQSRSSILKRLSQKKPISKG 1959344 Score = 29.3 bits (64), Expect = 1.6 Identities = 23/81 (28%), Positives = 35/81 (43%) Frame = +2 Query: 96 QVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDR 155 +VE +EK ++L EKR +KIE AK+ +D G + S + KR R Sbjct: 2457842 KVETEEEKQRRLRAEKRAKKIEAM-----------AAKRNAGKDDDGTAVSGISKRHRLR 2457988 Query: 156 KPLRGGGYNPLSGEGGGACSW 176 + + N +S E W Sbjct: 2457989 R--KKSALNAISPEEKERTEW 2458045 Score = 28.1 bits (61), Expect = 3.6 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -3 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEE-KRRQKIEMWDSMQEGKSYKGNAKKP 135 +++ A+ A+ K ++ A V+ + K LE + K R ++EM G ++P Sbjct: 2527344 EKRAAIKTAKSKGKKAKGA-VKDAEFKYDGLERDLKERHRLEMAQLNGTGGGDVTAQEQP 2527168 Query: 136 QEEDSPGPSTSSVLKRKS 153 EED P +TSS +++S Sbjct: 2527167 YEEDKPQTATSSATQQQS 2527114 Score = 27.7 bits (60), Expect = 4.7 Identities = 20/50 (40%), Positives = 22/50 (44%) Frame = -3 Query: 140 SPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSSGG*G 189 S G +S KR S + GGG SGEGG GR G GG G Sbjct: 2492709 SGGGGKTSPHKRGSGGQA--GGGRRRFSGEGGRGGGRHAGRGGRGGGGRG 2492566 Score = 26.9 bits (58), Expect = 8.0 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 23/111 (20%) Frame = -3 Query: 51 LSARLRALRQRQLDRAAA--AVEPDVVVKRQEA-------------LAAARLKMQEELNA 95 + R+RAL ++Q ++ A A++ + KR+ LA K +++ Sbjct: 425685 IKERVRALEEKQEEKRKAELAIKEEKRQKRKRVQEEKWKAKQEKAELAIKEAKRLKQMRV 425506 Query: 96 QVEKHK--------EKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138 Q EK K +K K+ +EEK + + E W + + K + + EE Sbjct: 425505 QEEKQKADLAVKEGQKRKRAQEEKWKAEQEKWKAERVIKEARLKRMRALEE 425353 >gb|AAFD02000013.1| Thalassiosira pseudonana CCMP1335 chromosome 10 THAPSchr_10_Cont13, whole genome shotgun sequence Length = 1105668 Score = 29.3 bits (64), Expect = 1.6 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Frame = -1 Query: 130 GNAKKPQEEDSPGPSTSSVLKRKSDRKPLR--GGGYNP-----LSGEGGGACSWRPGRRG 182 GN P +E S G S L + P R GGGY + G GGG R RG Sbjct: 39093 GNRYSPLDE-SQGSVRDSTLSQDDSNGPHRDNGGGYGTSQRREVYGRGGGRGRGRGQHRG 38917 Query: 183 PSS 185 PS+ Sbjct: 38916 PST 38908 >gb|AAFD02000035.1| Thalassiosira pseudonana CCMP1335 chromosome 19c THAPSchr_19c_29_Cont35, whole genome shotgun sequence Length = 286285 Score = 28.9 bits (63), Expect = 2.1 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +1 Query: 113 RQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLR 159 R+ E D MQ+ + NAK E D P +T++ +R+ ++PLR Sbjct: 120451 RKLNETLDEMQQSRDSYRNAKT-SEPDKPSSTTATRRRRQQPQQPLR 120588 >gb|AAFD02000057.1| Thalassiosira pseudonana CCMP1335 THAPS_bd_13x1_Cont14, whole genome shotgun sequence Length = 40170 Score = 28.5 bits (62), Expect = 2.7 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Frame = +3 Query: 130 GNAKKPQEEDSPGPSTSSVLKRKSDRKPLR--GGGYNP-----LSGEGGGACSWRPGRRG 182 GN P +E SPG S + +P R GG Y + G GGG R RG Sbjct: 2235 GNRYSPLDE-SPGSVWDSTPSQDDSNRPHRDYGGSYGTSQRREVYGRGGGRGRGRGQHRG 2411 Query: 183 PSS 185 PS+ Sbjct: 2412 PST 2420 >gb|AAFD02000009.1| Thalassiosira pseudonana CCMP1335 chromosome 5 THAPSchr_5_Cont9, whole genome shotgun sequence Length = 2305972 Score = 28.1 bits (61), Expect = 3.6 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Frame = +2 Query: 115 KIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGG--YNPLSGEGGG 172 ++E+ + G+ Y A Q D G + DR+ GG Y P G Sbjct: 1738394 RVELDAGFKPGRQYGRGASGGQVRDDRGGGSGR------DRRQSGGGDGHYQPQQSSNGN 1738555 Query: 173 ACSWRPGRRGPSSGG 187 W P + S GG Sbjct: 1738556 KPRWEPPSQAASGGG 1738600 Score = 27.3 bits (59), Expect = 6.1 Identities = 20/71 (28%), Positives = 26/71 (36%) Frame = +3 Query: 117 EMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNPLSGEGGGACSW 176 + W GKS KG++ K + S G G G + SG+G SW Sbjct: 1354899 DSWGGDYSGKSGKGSSGKSGKGSSGGSW---------------GSGSSGKSGKGSSGGSW 1355033 Query: 177 RPGRRGPSSGG 187 G G S G Sbjct: 1355034 GSGSSGKSGKG 1355066 Score = 26.9 bits (58), Expect = 8.0 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = -2 Query: 55 LRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQ 114 LRA + + A A E + + +R E L ARLK ++E A+V + + E +R Q Sbjct: 1359699 LRAQNEEEYSEAMRASEQEQI-RRSEELTLARLKREDEA-AKVRTERAMKLKFEASQRIQ 1359526 Query: 115 K 115 + Sbjct: 1359525 Q 1359523 Score = 26.9 bits (58), Expect = 8.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 155 RKPLRGGGYNPLSGEGGGACSWRPGRRG 182 R+ RG G++ + G GG C WR GR G Sbjct: 1704869 RRRSRGLGWDRVRGSRGG-CRWRGGRGG 1704949 >gb|AAFD02000066.1| Thalassiosira pseudonana CCMP1335 THAPS_bd_19x4_Cont23, whole genome shotgun sequence Length = 64429 Score = 27.7 bits (60), Expect = 4.7 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +1 Query: 60 QRQLDRAAAAVEPDVVVKRQEALA--AARLKMQEELNAQ---VEKHKEKLKQLEEEKRRQ 114 QR+ D +A A + R + AAR + QE+ AQ +E+ +++ K++ + K ++ Sbjct: 26098 QREEDSSAEAAATEATSSRPRKIGRLAARKEAQEKAAAQKKLLEEQQKQTKKMNDSKPKE 26277 Query: 115 KI 116 K+ Sbjct: 26278 KV 26283 >gb|AAFD02000012.1| Thalassiosira pseudonana CCMP1335 chromosome 9 THAPSchr_9_Cont12, whole genome shotgun sequence Length = 1191060 Score = 27.7 bits (60), Expect = 4.7 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +2 Query: 105 KQLEEEKRRQKIEMWDSMQEG-KSYKGNAKKPQEEDSPGPSTSSV 148 +Q +E K+ ++ E +S + K Y+GNA ++D P ++V Sbjct: 178103 RQTKERKKTERAER*ES*ERNYKQYEGNASSHHQQDEPNTPCTAV 178237 Score = 27.3 bits (59), Expect = 6.1 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = +1 Query: 71 EPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRR----QKIEMWDSMQEGK 126 E ++ +K + L R+ ++E+ A+ K ++ LEEEKR+ ++++ +++E K Sbjct: 120568 EAELAIKEETCLKRKRV-LEEKRKAEHAKRLKRKHALEEEKRKAEHAKRLKKKHALEEEK 120744 Query: 127 SYKGNAKKPQEE 138 K P+ E Sbjct: 120745 CKAEEEKLPKWE 120780 >gb|AAFD02000030.1| Thalassiosira pseudonana CCMP1335 chromosome 19a THAPSchr_19a_19_Cont30, whole genome shotgun sequence Length = 552297 Score = 27.3 bits (59), Expect = 6.1 Identities = 19/89 (21%), Positives = 39/89 (43%) Frame = -3 Query: 8 LSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAA 67 ++ RP + FLH + +L + + C LLYV+ Q +S + R L Sbjct: 88912 MNHRPMRDEPENSFLHAPLTTLHVSR-----YCCFLLYVLLQLVSHITSYINHRPLRTFG 88748 Query: 68 AAVEPDVVVKRQEALAAARLKMQEELNAQ 96 ++P V+ ++++ Q+ +N + Sbjct: 88747 CLMKPHVLTYLPPICSSSQHSSQQRVNLE 88661 >gb|AAFD02000019.1| Thalassiosira pseudonana CCMP1335 chromosome 12 THAPSchr_12_Cont19, whole genome shotgun sequence Length = 630688 Score = 27.3 bits (59), Expect = 6.1 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%) Frame = -1 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ 136 K + + + R K + E + + + + KLK E +KRR K + S+K ++ Sbjct: 229819 KNRSSSKSKRKKHRHEDSTKKKHKRRKLKDDEHKKRRHK--------DKSSHKHRRRRSD 229664 Query: 137 EEDSPGPS-----TSSVLKRKSDRK 156 +DS SS + KSDR+ Sbjct: 229663 SDDSSPDEERRRRDSSRKRHKSDRR 229589 >gb|AAFD02000006.1| Thalassiosira pseudonana CCMP1335 chromosome 4 THAPSchr_4_Cont6, whole genome shotgun sequence Length = 1267202 Score = 27.3 bits (59), Expect = 6.1 Identities = 19/76 (25%), Positives = 38/76 (50%) Frame = -3 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ 136 ++ EALAAA + EL A+ ++ KE+ +LE E+++ + G P+ Sbjct: 190257 EKSEALAAAAAAKRAELRAE-QRAKERAAKLEYEQQQ---------SAAAANGGGGLTPE 190108 Query: 137 EEDSPGPSTSSVLKRK 152 EE++ + + +R+ Sbjct: 190107 EEEARALAEAQAARRR 190060 Score = 26.9 bits (58), Expect = 8.0 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -3 Query: 81 ALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGK 126 AL AAR K Q +A+ E +LEE++R ++ +QEG+ Sbjct: 564669 ALEAARAKQQAIADAEANVDLEAKAKLEEQEREAAVQ---QVQEGR 564541 >gb|AAFD02000113.1| Thalassiosira pseudonana CCMP1335 THAPS_bd_37x91_Cont70, whole genome shotgun sequence Length = 11993 Score = 26.9 bits (58), Expect = 8.0 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 137 EEDSPGPSTSSVLKRKSDRKPLRGG 161 +ED S SS+LKR S +KP+ G Sbjct: 215 DEDDEKQSRSSILKRLSQKKPISKG 289 >gb|AAFD02000033.1| Thalassiosira pseudonana CCMP1335 chromosome 19b THAPSchr_19b_31_Cont33, whole genome shotgun sequence Length = 151677 Score = 26.9 bits (58), Expect = 8.0 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -2 Query: 101 KEKLKQLEEEKRRQKIEMWDSMQEGKSYK-GNAKKPQEEDSPGPSTSSVLKR 151 K++ QL E IE S+ + S K NAK+ +EED G + +R Sbjct: 83561 KDRQAQLTHESTLASIESLQSIIKDASVKLENAKRGREEDDSGERAKKMARR 83406 >gb|AAFD02000024.1| Thalassiosira pseudonana CCMP1335 chromosome 14 THAPSchr_14_Cont24, whole genome shotgun sequence Length = 998643 Score = 26.9 bits (58), Expect = 8.0 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%) Frame = +2 Query: 66 AAAAVEPDVVVKRQEALAAARLKMQE-----ELNAQVEKHKEKLKQLEEEKRRQKIEMWD 120 A +E D + K+ +KM E + V+KH+ ++ KR++ E Sbjct: 701402 AGGEMEGDSLKKQGSLKEDDDVKMDEVTGDDDKEPPVKKHRPLSIRIAVPKRKRPEE--- 701572 Query: 121 SMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLR 159 EG KG P+E ++ PST + D + R Sbjct: 701573 ---EGSKPKGETSAPEEPNASEPSTKKSKHAQDDTEANR 701680 >gb|AAFD02000015.1| Thalassiosira pseudonana CCMP1335 chromosome 11a THAPSchr_11a_Cont15, whole genome shotgun sequence Length = 761890 Score = 26.9 bits (58), Expect = 8.0 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = -3 Query: 44 LYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEK 103 L V +KL A+ L +R D + +A M EEL ++EK++ Sbjct: 540974 LTTVSEKLVAKADVLTERLADSESNFNYVHNRNLELDANCTLLTSMVEELKKEIEKYQSS 540795 Query: 104 LKQLEEEK 111 K +E+EK Sbjct: 540794 QKSMEDEK 540771 Database: genome.fa Posted date: Jan 19, 2010 5:14 PM Number of letters in database: 29,453,142 Number of sequences in database: 113 Lambda K H 0.316 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,772,434 Number of Sequences: 113 Number of extensions: 78447 Number of successful extensions: 873 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 541 Number of HSP's gapped (non-prelim): 658 length of query: 189 length of database: 9,817,714 effective HSP length: 94 effective length of query: 95 effective length of database: 9,807,092 effective search space: 931673740 effective search space used: 931673740 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (26.6 bits)