TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= (189 letters) Database: genome.fa 13 sequences; 8,173,701 total letters Searching.............done Score E Sequences producing significant alignments: (bits) Value gb|AAXT01000005.1| Babesia bovis strain T2Bo chromosome 1 gconti... 39 8e-04 gb|AAXT01000002.1| Babesia bovis strain T2Bo chromosome 4 gconti... 29 0.49 gb|AAXT01000003.1| Babesia bovis strain T2Bo chromosome 2 gconti... 29 0.49 gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3 gconti... 25 7.1 gb|AAXT01000006.1| Babesia bovis strain T2Bo chromosome 1 gconti... 25 9.2 gb|AAXT01000004.1| Babesia bovis strain T2Bo chromosome 4 gconti... 25 9.2 >gb|AAXT01000005.1| Babesia bovis strain T2Bo chromosome 1 gcontig_1104837696198, whole genome shotgun sequence Length = 821816 Score = 38.5 bits (88), Expect = 8e-04 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Frame = +2 Query: 52 SARLRALRQRQLDRAAAAVEPDVVVKRQE----ALAAARLKMQEELNAQVEKHKEKLKQL 107 +A+ R + R+ E + +KRQE A AA K QEE A+ K KQ Sbjct: 286904 AAQKRLEQMRRQAEEKLRKEKEAEMKRQEEEEQARIAAERKQQEEEEARQAAEK---KQQ 287074 Query: 108 EEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDS 140 EEE RQ+ E +E ++ + KK QEE++ Sbjct: 287075 EEEAARQEAERKRQQEEEEARQAAEKKQQEEEA 287173 Score = 37.7 bits (86), Expect = 0.001 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 4/107 (3%) Frame = +2 Query: 53 ARLRALRQRQLD----RAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLE 108 AR+ A R++Q + +AA + + RQEA R + QEE A+ K KQ E Sbjct: 287003 ARIAAERKQQEEEEARQAAEKKQQEEEAARQEA---ERKRQQEEEEARQAAEK---KQQE 287164 Query: 109 EEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDR 155 EE RQ+ E +E ++ + KK QEE++ L + R Sbjct: 287165 EEAARQEAERKRQQEEEEARQAAEKKQQEEEAARKEAEEQLANEKSR 287305 Score = 35.4 bits (80), Expect = 0.007 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Frame = +2 Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQ----VEKHKE 102 +K L A R+RQ L+ E + KRQEAL A R + + E + +E ++ Sbjct: 285776 RKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEAEAERKRQEALEAERK 285955 Query: 103 KLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 + + LE E++RQ+ E QE + ++ E + + KR+ Sbjct: 285956 RQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQEAEAERKRQ 286105 Score = 35.0 bits (79), Expect = 0.009 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%) Frame = +2 Query: 45 YVVFQKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-----QV 97 +V F+ L A R+RQ L+ E + KRQEAL A R K QE L A + Sbjct: 285155 WVEFKAEQEALEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEA 285331 Query: 98 EKHKEKLKQLEEEKRRQK-IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 E +++ + LE E++RQ+ +E QE ++ + + + E + + KR+ Sbjct: 285332 EAERKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQ 285499 Score = 35.0 bits (79), Expect = 0.009 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 21/113 (18%) Frame = +2 Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQ---------- 96 +K L A R+RQ L+ E + KRQEAL A R K QE L A+ Sbjct: 286094 RKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEAEAER 286270 Query: 97 -----VEKHKEKLKQLEEEKRRQKIEMWDSMQEG----KSYKGNAKKPQEEDS 140 +E +++ + LE E++RQ+ E QE K + A++ ++E++ Sbjct: 286271 KRQEALEAERKRQEALEAERKRQEAEAERKRQEAEAERKRQEAEAERKRQEEA 286429 Score = 33.9 bits (76), Expect = 0.020 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Frame = +2 Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-----QVEKHK 101 +K L A R+RQ L+ E + KRQEAL A R K QE L A + E + Sbjct: 285254 RKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEAEAER 285430 Query: 102 EKLKQLEEEKRRQK-IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 ++ + LE E++RQ+ +E QE ++ + + + E + + KR+ Sbjct: 285431 KRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQ 285586 Score = 33.9 bits (76), Expect = 0.020 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Frame = +2 Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-----QVEKHK 101 +K L A R+RQ L+ E + KRQEAL A R K QE L A + E + Sbjct: 285341 RKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEAEAER 285517 Query: 102 EKLKQLEEEKRRQK-IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 ++ + LE E++RQ+ +E QE ++ + + + E + + KR+ Sbjct: 285518 KRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQ 285673 Score = 33.9 bits (76), Expect = 0.020 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Frame = +2 Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-----QVEKHK 101 +K L A R+RQ L+ E + KRQEAL A R K QE L A + E + Sbjct: 285428 RKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEAEAER 285604 Query: 102 EKLKQLEEEKRRQK-IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 ++ + LE E++RQ+ +E QE ++ + + + E + + KR+ Sbjct: 285605 KRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQ 285760 Score = 33.9 bits (76), Expect = 0.020 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Frame = +2 Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-----QVEKHK 101 +K L A R+RQ L+ E + KRQEAL A R K QE L A + E + Sbjct: 285515 RKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEAEAER 285691 Query: 102 EKLKQLEEEKRRQK-IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 ++ + LE E++RQ+ +E QE ++ + + + E + + KR+ Sbjct: 285692 KRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQ 285847 Score = 33.9 bits (76), Expect = 0.020 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Frame = +2 Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-----QVEKHKEK 103 ++ A RQ L+ E + KRQEAL A R K QE L A + E +++ Sbjct: 285839 KRQEAEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEAEAERKR 286015 Query: 104 LKQLEEEKRRQK-IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 + LE E++RQ+ +E QE ++ + + + E + + KR+ Sbjct: 286016 QEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQ 286165 Score = 33.9 bits (76), Expect = 0.020 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Frame = +2 Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-----QVEKHK 101 +K L A R+RQ L+ E + KRQEAL A R K QE L A + E + Sbjct: 285920 RKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEAEAER 286096 Query: 102 EKLKQLEEEKRRQK-IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 ++ + LE E++RQ+ +E QE ++ + + + E + + KR+ Sbjct: 286097 KRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQ 286252 Score = 33.9 bits (76), Expect = 0.020 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Frame = +2 Query: 49 QKLSARLRALRQRQ--LDRAAAAVEPDVVVKRQEALAAARLKMQEELNA-----QVEKHK 101 +K L A R+RQ L+ E + KRQEAL A R K QE L A + E + Sbjct: 286007 RKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAER-KRQEALEAERKRQEAEAER 286183 Query: 102 EKLKQLEEEKRRQK-IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRK 152 ++ + LE E++RQ+ +E QE ++ + + + E + + KR+ Sbjct: 286184 KRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQ 286339 Score = 32.0 bits (71), Expect = 0.075 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 11/101 (10%) Frame = +2 Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVV--KRQEALAAARLKMQEELNAQ----VEKHKE 102 +K L A R+RQ A + + KRQEAL A R + + E + +E ++ Sbjct: 285632 RKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQEAEAERKRQEALEAERK 285811 Query: 103 KLKQLEEEKRRQKIEMWDSMQEG-----KSYKGNAKKPQEE 138 + + LE E++RQ+ E QE K + A++ ++E Sbjct: 285812 RQEALEAERKRQEAEAERKRQEALEAERKRQEAEAERKRQE 285934 Score = 31.2 bits (69), Expect = 0.13 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Frame = +2 Query: 49 QKLSARLRALRQRQLDRAAAAVEPDVVV--KRQEALAAARLKMQEELNAQVEKHKEKLKQ 106 +K L A R+RQ A + + KRQEAL A R + + E + ++ + + K+ Sbjct: 286211 RKRQEALEAERKRQEAEAERKRQEALEAERKRQEALEAERKRQEAEAERKRQEAEAERKR 286390 Query: 107 LEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEE 138 E E R++ E ++ ++ + +K QEE Sbjct: 286391 QEAEAERKRQEEAEAERKRQEEAEAERKRQEE 286486 Score = 26.6 bits (57), Expect = 3.2 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +1 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEE---EKRRQKIEMWDSMQEGK 126 K+QE A R Q L + K KEKLKQ + EKRR++ E + G+ Sbjct: 697591 KKQELKEAKR--QQRALIDEERKEKEKLKQQRDDLREKRREEKERQRQEEVGR 697743 Score = 26.2 bits (56), Expect = 4.1 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +2 Query: 89 MQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQE 137 +QE + VE KEK+K LEE K+ +++ K AKK QE Sbjct: 798302 VQEVVEKLVEGVKEKVKALEEIKK--------TLEAAKEKLEEAKKTQE 798424 Score = 25.0 bits (53), Expect = 9.2 Identities = 25/102 (24%), Positives = 44/102 (43%) Frame = -3 Query: 57 ALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKI 116 ++ +R+ ++ AV D VK+ + L +VE ++ K++E KR+ Sbjct: 357720 SMEKRRTNQMTDAVTVDSPVKKH---------FSDLLENKVEL-EQSYKRIESRKRQNAD 357571 Query: 117 EMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPL 158 D +S K+PQEE SS K KS ++ + Sbjct: 357570 AELDVTNSNESI---IKRPQEESQEMAIKSSSRKSKSTKQEI 357454 >gb|AAXT01000002.1| Babesia bovis strain T2Bo chromosome 4 gcontig_1104837696308, whole genome shotgun sequence Length = 1797577 Score = 29.3 bits (64), Expect = 0.49 Identities = 11/31 (35%), Positives = 23/31 (74%) Frame = +1 Query: 87 LKMQEELNAQVEKHKEKLKQLEEEKRRQKIE 117 +K E+ + ++H+E++ + EEE++RQ+IE Sbjct: 287881 MKRTSEIYQRRQEHQEEMLRAEEERKRQEIE 287973 Score = 26.6 bits (57), Expect = 3.2 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Frame = -3 Query: 98 EKHKEKLKQLEEEKRRQKIEMWDSMQEGKS----YKGNAKKPQEEDSPGPSTSSVLKRKS 153 E+H ++ K EEE + +K D + KS +K + + E+ + STS S Sbjct: 1764011 EEHNDENKPHEEEHKDEKSHDDDHKDDNKSHEEEHKDDKEATDEQKNDSVSTSDNTSSSS 1763832 Query: 154 DRK 156 D K Sbjct: 1763831 DDK 1763823 Score = 25.4 bits (54), Expect = 7.1 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = -1 Query: 77 KRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEK 111 +R EA ARL+ +++ + E++KE ++ EEE+ Sbjct: 356644 ERYEAEEKARLEAEKDAEKEEEENKEGAEEDEEEE 356540 >gb|AAXT01000003.1| Babesia bovis strain T2Bo chromosome 2 gcontig_1104837696614, whole genome shotgun sequence Length = 1729419 Score = 29.3 bits (64), Expect = 0.49 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 6/82 (7%) Frame = +3 Query: 51 LSARLRALRQRQLDRAAA-----AVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEK-L 104 L+ARL A RQRQL +V + ++++E R +++EE +VE+ + K Sbjct: 1631805 LAARLAAERQRQLQEVRIYLSFHSV*MEEKLRKEEE---ERRRIEEEERKRVEEEERKRQ 1631975 Query: 105 KQLEEEKRRQKIEMWDSMQEGK 126 +QLE ++++K +EGK Sbjct: 1631976 EQLEARRQQRKERRERMKKEGK 1632041 Score = 26.6 bits (57), Expect = 3.2 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = -1 Query: 62 QLDRAAAAVEP---DVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEE 109 QL A A+E DV+ K +EAL A+ ++ N +K +E K+L+E Sbjct: 355797 QLGNAQEALETKDKDVIEKVKEALRKAKEGLETAKNGLKDKLEEAKKKLDE 355645 Score = 26.6 bits (57), Expect = 3.2 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 132 AKKPQEEDSPGPSTSSVLKRKSDRKP 157 A +P +P P+T + K KS RKP Sbjct: 20207 APQPAPSAAPSPTTDTTKKEKSPRKP 20130 >gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3 gcontig_1104837696278, whole genome shotgun sequence Length = 2593320 Score = 25.4 bits (54), Expect = 7.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 33 YGWYIVFSCILLYVVFQKLSARLRAL 58 Y +Y F CI+ +F +SAR+R L Sbjct: 609657 YTYYFFFGCIVRLHLFGAVSARVRKL 609734 Score = 25.4 bits (54), Expect = 7.1 Identities = 11/50 (22%), Positives = 23/50 (46%) Frame = +1 Query: 36 YIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAA 85 YI+ +C+L Y++ S + + +Q + ++ K +E A A Sbjct: 2002717 YIIMTCMLGYILLYTFSKNMTPVTSKQTEFLPKDGVTNITAKNEETYAVA 2002866 Score = 25.0 bits (53), Expect = 9.2 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%) Frame = +3 Query: 26 VGSLLATY-----GWYIVFSCILLYVVF 48 +GSL++ Y GW SC L YV+F Sbjct: 531714 IGSLVSVYTAHIVGWNTKTSCQLTYVIF 531797 Score = 25.0 bits (53), Expect = 9.2 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 129 KGNAKKPQEEDSPGPSTSSVLKRKSDRKPL 158 KG A P + PST ++LK D+K L Sbjct: 951899 KGTASTPDTSATLLPSTCAILKNPEDKKYL 951810 >gb|AAXT01000006.1| Babesia bovis strain T2Bo chromosome 1 gcontig_1104837696622, whole genome shotgun sequence Length = 285379 Score = 25.0 bits (53), Expect = 9.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 90 QEELNAQVEKHKEKLKQLEEEKRRQKIE 117 +EE + EK KEK K+ EEE+ ++ E Sbjct: 257572 EEEEEEEEEKEKEKEKEKEEEEEVEEEE 257655 >gb|AAXT01000004.1| Babesia bovis strain T2Bo chromosome 4 gcontig_1104837696380, whole genome shotgun sequence Length = 827912 Score = 25.0 bits (53), Expect = 9.2 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +2 Query: 35 WYIVFSCILLYVV 47 W+ FSCILL+V+ Sbjct: 270287 WFTYFSCILLFVI 270325 Database: genome.fa Posted date: Jan 19, 2010 5:04 PM Number of letters in database: 8,173,701 Number of sequences in database: 13 Lambda K H 0.316 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,437,825 Number of Sequences: 13 Number of extensions: 17435 Number of successful extensions: 175 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 78 Number of HSP's gapped (non-prelim): 129 length of query: 189 length of database: 2,724,567 effective HSP length: 85 effective length of query: 104 effective length of database: 2,723,462 effective search space: 283240048 effective search space used: 283240048 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)