TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: genome.fa 
           32,746 sequences; 89,612,356 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAHK01002216.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   1.00 
gb|AAHK01010059.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    29   1.3  
gb|AAHK01002629.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    29   1.3  
gb|AAHK01000463.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    29   1.3  
gb|AAHK01019121.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    28   2.9  
gb|AAHK01017160.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    28   2.9  
gb|AAHK01027991.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    28   3.8  
gb|AAHK01003721.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    28   3.8  
gb|AAHK01002418.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    27   5.0  
gb|AAHK01000092.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    27   5.0  
gb|AAHK01000027.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    27   5.0  
gb|AAHK01000624.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    27   6.5  
gb|AAHK01001310.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    27   8.5  
gb|AAHK01000648.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    27   8.5  
gb|AAHK01000540.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    27   8.5  

>gb|AAHK01002216.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053503785, whole genome
            shotgun sequence
          Length = 6848

 Score = 29.6 bits (65), Expect = 1.00
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +1

Query: 50   NFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDDGFFKKKRTGGLPKSRIMEL 104
            N ++   N    FF   L  ++T ++ N KNN++++ F KKKR     K +I EL
Sbjct: 2215 NNVRITFNCFFSFFFFFLRNTSTRRNKN-KNNNNNNTFTKKKR-----KKKICEL 2361


>gb|AAHK01010059.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053472305, whole genome
            shotgun sequence
          Length = 1135

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
 Frame = -3

Query: 32   ALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQS---------SNGKNND 82
            A  ++ I+P +  +  + + +   I+  A  FK   G +NTS S         +NGK +D
Sbjct: 1052 ARRSRVIIPKLYAVSRLYDALACQISSAAGDFKRDCGNTNTSSSLALGNCFCGTNGKLDD 873

Query: 83   DDDGFF 88
            DDD  F
Sbjct: 872  DDDARF 855


>gb|AAHK01002629.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053402857, whole genome
            shotgun sequence
          Length = 5182

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 48   IINFIKTVINILAIFFKT--LLGQSNTSQSSNGKNNDDDDGFFKKKRTGG 95
            +I   +TV  I+ I ++   +LGQS +S+++ G+N   DDG    K  GG
Sbjct: 3365 LIGDAETVTRIIFILYRARGVLGQSVSSENAAGEN--ADDGVINSKGKGG 3222


>gb|AAHK01000463.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053508465, whole genome
             shotgun sequence
          Length = 34257

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 65    TLLGQSNTSQSSNGKNNDDDDGFFKKKRTG 94
             T +G+ NT  + NG+ N     F KKKR G
Sbjct: 29128 TQIGR*NTKGTKNGQTNKQQQHFVKKKRIG 29039


>gb|AAHK01019121.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053496607, whole
           genome shotgun sequence
          Length = 927

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 57  NILAIFFKTLLGQSNTSQSSNGKNNDDDDGFFKKKRT 93
           NIL IF  T +G+S T      K    + G  KKK+T
Sbjct: 317 NILIIFHGTFIGRSTTPVCMLAKQRPHNGGAKKKKKT 207


>gb|AAHK01017160.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053464799, whole
           genome shotgun sequence
          Length = 954

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 57  NILAIFFKTLLGQSNTSQSSNGKNNDDDDGFFKKKRT 93
           NIL IF  T +G+S T      K    + G  KKK+T
Sbjct: 518 NILIIFHGTFIGRSTTPVCMLAKQRPHNGGAKKKKKT 408


>gb|AAHK01027991.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053453283, whole
           genome shotgun sequence
          Length = 758

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 28  RKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTL 66
           R+ N++  K +L I+NF    INF K+ IN++ I +  L
Sbjct: 108 RRENSI*GKIMLLIVNFFLNWINF-KSEINLVDILWSCL 221


>gb|AAHK01003721.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053429789, whole
           genome shotgun sequence
          Length = 2656

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 33  LHNKFILPIINFIKGIINFIKTVINILAIFFKTLL 67
           L N  +  I+NF+K +I FIKT+     +FFK  L
Sbjct: 407 LLNN*LFNIVNFLKKVIKFIKTL-----LFFKQTL 318


>gb|AAHK01002418.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053503515, whole genome
            shotgun sequence
          Length = 5951

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 5    KENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
            K+  +   Y++++RDRK   +++R+  A H+K
Sbjct: 1785 KDPAQEEPYKVYMRDRKEYEDRVRQEVAKHHK 1690


>gb|AAHK01000092.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506211, whole genome
             shotgun sequence
          Length = 70416

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 64    KTLLGQSNTSQSSNGKNNDDDDGFFKKKRTGGLPK 98
             KTL+ +     SS  K N+D+    KKK++ GLP+
Sbjct: 18255 KTLVKEKKKKISSCNKTNEDNKKRRKKKQSIGLPR 18359


>gb|AAHK01000027.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053508741, whole genome
             shotgun sequence
          Length = 101082

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 5     KENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
             K+  +   Y++++RDRK   +++R+  A H+K
Sbjct: 60676 KDPAQEEPYKVYMRDRKEYEDRVRQEVAKHHK 60771


>gb|AAHK01000624.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509747, whole genome
             shotgun sequence
          Length = 28242

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 9     KNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINF 44
             K+  +  FLR +K K  K R+R    N F LP++ F
Sbjct: 16748 KDGLFPFFLR*KKKKTSKKRRRVGEENCFFLPLLFF 16641


>gb|AAHK01001310.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506893, whole genome
             shotgun sequence
          Length = 14164

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 20    RKLKYEKIRKRNALHNKFILPII 42
             R+ K E  R  NAL N+FI P++
Sbjct: 11469 RRTKRENDRPENALQNRFINPVV 11401


>gb|AAHK01000648.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509775, whole genome
             shotgun sequence
          Length = 27223

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 71    NTSQSSNGKNNDDDDG 86
             +TSQ +N  N+DDDDG
Sbjct: 13061 DTSQFNNNNNDDDDDG 13014


>gb|AAHK01000540.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053506155, whole genome
             shotgun sequence
          Length = 31071

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 69    QSNTSQSSNGKNNDDDDGFFKKKRTGGL 96
             Q    + SN KNN+ D+   KKK +G L
Sbjct: 9985  QEQNKRDSNNKNNNTDNNKKKKKNSGFL 10068


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:13 PM
  Number of letters in database: 89,612,356
  Number of sequences in database:  32,746
  
Lambda     K      H
   0.320    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,586,863
Number of Sequences: 32746
Number of extensions: 114075
Number of successful extensions: 841
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of query: 116
length of database: 29,870,785
effective HSP length: 88
effective length of query: 28
effective length of database: 26,989,137
effective search space: 755695836
effective search space used: 755695836
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)