TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from XP_001348206.1 # QUERY (116 letters) Database: genome.fa 9 sequences; 8,347,606 total letters Searching.........done Score E Sequences producing significant alignments: (bits) Value gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ct... 34 0.007 gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 ch... 31 0.063 gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch... 30 0.082 gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct... 25 2.6 gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct... 25 4.5 >gb|AAGK01000004.1| Theileria parva strain Muguga chromosome 4 ctg_529, whole genome shotgun sequence Length = 1835834 Score = 33.9 bits (76), Expect = 0.007 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +1 Query: 33 LHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDD 84 +HNK+I+ I+NFIKGI++ ILA + G+S S + ++D D Sbjct: 854755 IHNKYIIFIMNFIKGIVD------GILATDIDSSTGKSKYSYDPDVAHDDSD 854892 Score = 26.2 bits (56), Expect = 1.5 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 31 NALHNKFILPIINFIKGIINFIK 53 N HN IL +NFI I+N I+ Sbjct: 1658012 NCYHNSSILCPVNFIANIVNIIR 1657944 Score = 25.0 bits (53), Expect = 3.4 Identities = 20/83 (24%), Positives = 38/83 (45%) Frame = +2 Query: 25 EKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDD 84 +K++++N L+ I F + I+ +++ I+ ++ +QS +G+N D Sbjct: 993641 KKLKEQNELNGNVTRKIYGFTRQKISLERSLKAII----------TSDNQSLSGRNWKQD 993790 Query: 85 DGFFKKKRTGGLPKSRIMELKNL 107 KKKR + KS I L Sbjct: 993791 LQKLKKKRLNQITKSIISTANTL 993859 Score = 24.6 bits (52), Expect = 4.5 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -1 Query: 62 FFKTLLGQSNTSQSSNG--KNNDDDDGFFKKKRTGGLPKSRIMELKNLGTCLGS 113 + K ++GQ N+ N N D + +K L K + ELK++G CL S Sbjct: 1184699 YSKYIIGQGNSQIDCNRAFSINKDRNEECVEKCERNLEKCKSYELKDVGLCLFS 1184538 Score = 24.6 bits (52), Expect = 4.5 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 65 TLLGQSNTSQSSNGKNNDDDDG 86 T++ NT SSNG N ++DG Sbjct: 794760 TIIHHYNTDHSSNGLNKVNEDG 794825 >gb|AAGK01000001.1| Theileria parva strain Muguga chromosome 1 chr1_complete, whole genome shotgun sequence Length = 2540030 Score = 30.8 bits (68), Expect = 0.063 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -1 Query: 50 NFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDDGF 87 NFI + NI+A T ++ S N K NDDDD F Sbjct: 1552985 NFINNIQNIVASTQPTNFAKTTAQYSGNVKMNDDDDIF 1552872 Score = 29.3 bits (64), Expect = 0.18 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = -2 Query: 37 FILPIINFIKGIINFIKTVINIL 59 +I IIN+IK IIN+IK +IN + Sbjct: 2444332 YIKYIINYIKYIINYIKCIINYI 2444264 Score = 29.3 bits (64), Expect = 0.18 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%) Frame = +2 Query: 3 DRKENKKNADYEIFLRDR------KLKYEKIRKRNALHNKFILPIIN 43 D K +++ YE +L DR L+YE I K N +H+ I IIN Sbjct: 1150136 DNKLTQEDEKYEKYLNDRIVHRIKNLEYEIILKPNLIHDYTIKNIIN 1150276 Score = 28.5 bits (62), Expect = 0.31 Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 1/25 (4%) Frame = -2 Query: 36 KFILP-IINFIKGIINFIKTVINIL 59 K+I+ IIN+IK IIN+IK +IN + Sbjct: 2444359 KYIIKYIINYIKYIINYIKYIINYI 2444285 Score = 26.6 bits (57), Expect = 1.2 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = +2 Query: 37 FILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDDGF 87 + L I+N+I I+N+I ++N + + ++ + N G + DDG+ Sbjct: 2444276 YTLYIVNYILYIVNYILYIVNYILNYIL*IVNKVN*CIRKCGVADGSDDGW 2444428 Score = 26.2 bits (56), Expect = 1.5 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +3 Query: 5 KENKKNADYEIFLRDRKLK--YEKIRKRNALHNKFILPIINFIK 46 K NKK Y+I L D K + + + L N+FI IINFIK Sbjct: 1643643 KMNKK*K*YKIDLWDNKTPK*HTILEEIGIL*NRFIWGIINFIK 1643774 Score = 25.8 bits (55), Expect = 2.0 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = -2 Query: 17 LRDRKLKYEK---IRKRNALHNKFILPIINFIKGIINFIKTVI 56 + DR LKY K I KR ++ LP+I K I+NF K +I Sbjct: 101149 MEDRILKYTKSS*IYKRYLIY----LPLIMRFKLIVNFSKIII 101033 Score = 23.9 bits (50), Expect = 7.7 Identities = 15/55 (27%), Positives = 25/55 (45%) Frame = -2 Query: 24 YEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNG 78 Y+ IR + +NK IL + N+IK ++ + N + N S+ S G Sbjct: 1530742 YKDIRNKRK-YNKSILGVTNYIKPLVGDLSGYSNWEPTLYTNWYNHKNGSKISFG 1530581 Score = 23.9 bits (50), Expect = 7.7 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 33 LHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNT 72 L N+FI I+ I I F+KT + + F TL+ NT Sbjct: 2392272 LFNRFIK*ILR*INFIYTFVKTTM----LSFITLIATQNT 2392379 >gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome shotgun sequence Length = 1971884 Score = 30.4 bits (67), Expect = 0.082 Identities = 23/54 (42%), Positives = 27/54 (50%) Frame = -1 Query: 31 NALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDD 84 N L N F L NF N KT IN++ LL +NT SSN NNDD+ Sbjct: 813878 NLLENVFYL---NFH----NNHKTQINVIPKTNSHLLNNNNTIDSSNTVNNDDN 813738 Score = 26.9 bits (58), Expect = 0.91 Identities = 8/24 (33%), Positives = 20/24 (83%) Frame = +3 Query: 41 IINFIKGIINFIKTVINILAIFFK 64 +I++++ +I +IKT+IN+ +++ K Sbjct: 465267 VISYLRPVIAYIKTIINMQSVYVK 465338 Score = 26.6 bits (57), Expect = 1.2 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +3 Query: 35 NKFILPIINFIKGIINFIKTVIN 57 N FI I NF++ IINFI+ +IN Sbjct: 1276101 NSFIQ*INNFVQ*IINFIQ*IIN 1276169 Score = 25.0 bits (53), Expect = 3.4 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -3 Query: 24 YEKIRKRNALHNKFILPIINFIKGIINFIKTV 55 Y KI+KRN ++ I I NFI I+ I T+ Sbjct: 1033986 YFKIKKRNRIYILIIPMISNFIHPSIHKILTI 1033891 Score = 24.6 bits (52), Expect = 4.5 Identities = 20/57 (35%), Positives = 25/57 (43%) Frame = -1 Query: 37 FILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDDGFFKKKRT 93 FI +I FIK + FIK V+ I + F Q + SN D K KRT Sbjct: 1397099 FIFTLIYFIKFTL*FIKIVLLIPCLAFDWSKSQDWQTYFSNLYPTPDASKVPKFKRT 1396929 Score = 24.6 bits (52), Expect = 4.5 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +2 Query: 38 ILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNG 78 I PI+ IK + F I+ ++++ ++ S SSNG Sbjct: 1065650 ITPILGDIKNLFGFF*YTIHTNILYYRYIIYNMAYSNSSNG 1065772 Score = 24.3 bits (51), Expect = 5.9 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Frame = +3 Query: 35 NKFILPIINFIKGIINF---IKTVINILAIFFK 64 N F+ IINFI+ IINF I + I + F K Sbjct: 1276122 NNFVQ*IINFIQ*IINFNQQINSFIE*ITSFIK 1276220 Score = 23.9 bits (50), Expect = 7.7 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%) Frame = +2 Query: 23 KYEKIRKRNALHNK--FILPIINFIKGIINFI--------KTVINILAIFFKTLL 67 KYE+ + + + K FIL + F I I KT+I I+ + FKT++ Sbjct: 1060106 KYEEATEESQKYKKGKFILEKVPFTLFIFQDI**IFRHC*KTIIRIIPVVFKTIM 1060270 Score = 23.9 bits (50), Expect = 7.7 Identities = 8/36 (22%), Positives = 23/36 (63%) Frame = +3 Query: 31 NALHNKFILPIINFIKGIINFIKTVINILAIFFKTL 66 ++LH+++ PI+N + ++ + +++++L F L Sbjct: 1261644 HSLHSEYTEPILNVLTVLVVLVVSLVSLLPTEFTVL 1261751 >gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome shotgun sequence Length = 570487 Score = 25.4 bits (54), Expect = 2.6 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = -1 Query: 38 ILPIINFIKGIINFIKTVINILAIF 62 ++ +NFI I+NF V +L++F Sbjct: 244156 VIKDVNFINAIVNFFANVSRLLSMF 244082 Score = 25.4 bits (54), Expect = 2.6 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +2 Query: 27 IRKRNALHNKFILPIINFIKGIINFI 52 + + N LH+ + P+ NFI + NFI Sbjct: 401825 LTQSNHLHSN*LYPLTNFIYSLTNFI 401902 Score = 23.9 bits (50), Expect = 7.7 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +1 Query: 31 NALHNKFILPIINFIKGIINFIKTVIN---ILAIFFKTLLGQSNTSQSSNG-KNNDDDDG 86 NAL+ + L INF+K FIKT N L T + N + NG K N ++ Sbjct: 289042 NALYVENELTTINFLKLAEMFIKTAENPDKDLVTMMNTEV--KNVERLENGFKVNTNNGE 289215 Query: 87 FFKK 90 FF K Sbjct: 289216 FFSK 289227 Score = 23.9 bits (50), Expect = 7.7 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +3 Query: 57 NILAIFFKTLLGQSNTSQSSNGKNN 81 +I++ +FK L + TS SN +NN Sbjct: 360438 HIVSYYFKPLENERKTSNRSNVRNN 360512 >gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun sequence Length = 1317241 Score = 24.6 bits (52), Expect = 4.5 Identities = 15/60 (25%), Positives = 25/60 (41%) Frame = -2 Query: 8 KKNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLL 67 +KN DY +F + + + + H +IL I N++ I T FF +L Sbjct: 1067703 RKNGDYVLFYPTIRSFFFLTNRTFSAHPVYILSIKNYLGHQIKLFTTSFTF*TNFFNIIL 1067524 Score = 24.6 bits (52), Expect = 4.5 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -3 Query: 17 LRDRKLKYEKIRKRNALHNKFILPIIN 43 L + +KY + R++N NKF L ++N Sbjct: 497570 LLKKLIKYNEKRRKNPNSNKFTLVVLN 497490 Score = 23.9 bits (50), Expect = 7.7 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -3 Query: 34 HNKFILPIINFIKGIINF 51 HN F + IINF+ IINF Sbjct: 54323 HN*FYVSIINFMFFIINF 54270 Database: genome.fa Posted date: Jan 19, 2010 5:27 PM Number of letters in database: 8,347,606 Number of sequences in database: 9 Lambda K H 0.320 0.140 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 997,579 Number of Sequences: 9 Number of extensions: 14972 Number of successful extensions: 178 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 157 length of query: 116 length of database: 2,782,535 effective HSP length: 78 effective length of query: 38 effective length of database: 2,781,833 effective search space: 105709654 effective search space used: 105709654 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)