TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from XP_001348206.1 # QUERY (116 letters) Database: genome.fa 8 sequences; 8,358,125 total letters Searching........done Score E Sequences producing significant alignments: (bits) Value emb|CR940347.1| Theileria annulata strain Ankara isolate clone C... 29 0.24 emb|CR940348.1| Theileria annulata strain Ankara isolate clone C... 28 0.31 emb|CR940352.2| Theileria annulata strain Ankara isolate clone C... 28 0.41 emb|CR940353.1| Theileria annulata strain Ankara isolate clone C... 27 0.91 >emb|CR940347.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN PROGRESS *** Length = 2592520 Score = 28.9 bits (63), Expect = 0.24 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%) Frame = -1 Query: 3 DRKENKKNADYEIFLRDR------KLKYEKIRKRNALHNKFILPIINFIK 46 ++K N++N YE +L D+ L+YE I K N + + I IIN K Sbjct: 1494976 EKKLNEENEKYEKYLNDKIKHKIKNLEYEIILKPNLIQDYNIKNIINLKK 1494827 Score = 27.3 bits (59), Expect = 0.69 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 50 NFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDDGF 87 NFI + NI+A + + ++ S K NDDDD F Sbjct: 1053149 NFINNIQNIVASTQPSNIAKTTAQYSGTVKLNDDDDIF 1053262 Score = 26.6 bits (57), Expect = 1.2 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -2 Query: 29 KRNALHNKFILPIINFIKGIIN--FIKTVINILAIFFKTLLGQSNTSQSSNG 78 K + L+N I I + K +N F K +L FFK +L SN + +NG Sbjct: 1237092 KYDYLNNVLINEYIEYSKKYVNPKFTKEAKLMLYKFFKEILEMSNNNCDANG 1236937 Score = 26.6 bits (57), Expect = 1.2 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +3 Query: 20 RKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTL 66 R +++ + +KRN H + + +KG+I I I + +IF +T+ Sbjct: 2331399 RIIQW*EFKKRNQTHTNSKILSVRILKGVIPLIFLNIFMFSIFSQTI 2331539 Score = 26.2 bits (56), Expect = 1.5 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Frame = +2 Query: 2 DDRKENKKNADYEIFLRDRKLKYEKIRKRNALH-NKFILPIINFIKGIINFIKTVINILA 60 +DR EN KN+D K E N + NKFI N K N + + N A Sbjct: 1050878 EDRSENNKNSD---------TKTENTNTANMSNTNKFITK--NRTKSTNNAVNNIANDSA 1051024 Query: 61 IFFKTLLGQSNTSQSSNGKNND 82 + + + + SSN D Sbjct: 1051025 TNYTSSTASNVSDDSSNASTTD 1051090 Score = 25.8 bits (55), Expect = 2.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 42 INFIKGIINFIKTVINILAIFFKTLL 67 INFIK NFI ++ IL I L+ Sbjct: 1493373 INFIKKSFNFIPNILTILIIIIVILI 1493450 Score = 25.4 bits (54), Expect = 2.6 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +3 Query: 24 YEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFK 64 Y I N L NK+I ++ +I ++ FIK INIL FK Sbjct: 100746 YHHILIHNML-NKYINKLLIYISILLTFIK**INIL*CVFK 100865 Score = 25.4 bits (54), Expect = 2.6 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Frame = +3 Query: 20 RKLKYEKIRKRNALHN----KFILPIINFIKGIINFIKTVINILAIF 62 + ++Y + K N L + F++ IIN I N +++INIL+ F Sbjct: 625341 KHIRYMVLNKMNYLSS*HY*NFVVVIINCQPIIFNEYRSIINILSSF 625481 Score = 25.0 bits (53), Expect = 3.4 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 33 LHNKFILPIINFIKGIINFIKTVINILA 60 L NKFI I F+ ++NF +N+LA Sbjct: 224870 LLNKFIY*KITFLSFLLNFPNLYVNLLA 224953 Score = 24.3 bits (51), Expect = 5.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 38 ILPIINFIKGIINFIKTVINILAIFF 63 I PII F IIN + + N ++FF Sbjct: 2526696 ISPIIKFYPSIINDVVHIYNKFSLFF 2526619 Score = 23.9 bits (50), Expect = 7.7 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -3 Query: 35 NKFILPIINFIKGIIN 50 N FI I+N IKG+IN Sbjct: 1473434 NFFIFQIVNKIKGVIN 1473387 >emb|CR940348.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN PROGRESS *** Length = 1979170 Score = 28.5 bits (62), Expect = 0.31 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 13/77 (16%) Frame = -2 Query: 19 DRKLKYEKIRKRNALHNKFILPIINFIKGIIN---FIKTVINILAIFFKTLLGQSN---- 71 + K K EK +++ L+ K + I+ I GI N + +++ L I F TLL SN Sbjct: 398997 NEKEKNEKNKEKENLNEKKYINGIDGIIGINNLYDYSNLLLHTLNIHFLTLLYYSNTVTG 398818 Query: 72 ------TSQSSNGKNND 82 T SSNG N D Sbjct: 398817 TTVTNSTGISSNGVNKD 398767 Score = 25.8 bits (55), Expect = 2.0 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -1 Query: 25 EKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQS 75 +K +K L I ++NF I +F+ + L+ F+TLL S+ Q+ Sbjct: 1090603 DKKKKVTQLTVGEIWDMVNFYPDIFDFVPQEVRNLSTLFQTLLKISDVEQT 1090451 Score = 25.8 bits (55), Expect = 2.0 Identities = 14/54 (25%), Positives = 25/54 (46%) Frame = +3 Query: 29 KRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNND 82 K N N F++ I++ N +K ++ +F K + NTS + NN+ Sbjct: 1841634 KTNTSINCFVMQNIDYF----NDVKVSFDLKGVFLKRFISIQNTSSNGVATNNN 1841783 Score = 24.6 bits (52), Expect = 4.5 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = +1 Query: 52 IKTVINILAIFFKTLLGQSNTSQSSNGKNN 81 ++ ++N+L I FK +L +++ SSN N Sbjct: 225340 LREIVNVLLILFKYILYINSSDNSSNDDLN 225429 Score = 24.6 bits (52), Expect = 4.5 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 45 IKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDDGFFKKK 91 I G+ N +T+IN+ KTL+ + S G NN+ + KK Sbjct: 283595 IDGVCNLRRTLINLKRSENKTLMPYKKYNLSFIGLNNNFRNNVLVKK 283735 Score = 24.3 bits (51), Expect = 5.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -1 Query: 44 FIKGIINFIKTVINILAIFFKTLLGQSNTS 73 FIK + ++ +++IL IFFK ++N S Sbjct: 1356646 FIKAFL*IVQHILSILEIFFKKYNIRNNLS 1356557 Score = 24.3 bits (51), Expect = 5.9 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -1 Query: 35 NKFILPIINFIKGIINFIKTVIN 57 NK+IL II K IN+I +N Sbjct: 286735 NKYILKIIYVYKEYINYINMFVN 286667 Score = 23.9 bits (50), Expect = 7.7 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +3 Query: 9 KNADYEIFLRDRKLKYEKIRKRNAL-HNKFILPIINFIKGIINFIKTVINILAIFF 63 K D +FL KL + K N + + IIN IINF+K + N+ +FF Sbjct: 388221 KFLDCTVFLEKYKLGFNKFSGDNIE*FDS**IIIINS**IIINFLKDI*NLHVVFF 388388 Score = 23.9 bits (50), Expect = 7.7 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = -1 Query: 57 NILAIFFKTLLGQSNTSQS 75 NIL +F TL+ QSNT+++ Sbjct: 785083 NILLLFLHTLM*QSNTAKT 785027 >emb|CR940352.2| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces Length = 1898942 Score = 28.1 bits (61), Expect = 0.41 Identities = 14/44 (31%), Positives = 26/44 (59%) Frame = -1 Query: 36 KFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGK 79 K++ +IN++K +IN++K +IN I+ L+ Q +N K Sbjct: 17171 KYLKVLINYLKVLINYLKVLIN--NIYLMVLINQQVVMVHNNLK 17046 Score = 25.8 bits (55), Expect = 2.0 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +2 Query: 22 LKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSN 77 +KY K K N FILP+ +F+ I+F V L + S+S+N Sbjct: 216395 IKYCKFGKLRICSNIFILPVPDFLNLSISFNTNVFTSCICICLYLHHNISNSESNN 216562 Score = 25.4 bits (54), Expect = 2.6 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 30 RNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTS 73 RN++H+ L IN+ I+N + T +I F + G ++S Sbjct: 319384 RNSIHHVICLN*INYQNKIVN*LHTTCSIKFAIFGPIPGSDSSS 319515 Score = 25.0 bits (53), Expect = 3.4 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -1 Query: 42 INFIKGIINFIKTVINILAIF 62 +NFI I+NF V +L++F Sbjct: 1576475 VNFINAIVNFFANVSRLLSMF 1576413 Score = 25.0 bits (53), Expect = 3.4 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -2 Query: 41 IINFIKGIINFIKTVINILAIFFKT 65 I+N + +N+I+T+I + IFF T Sbjct: 1367806 ILNG*QAKVNYIRTIIRAIYIFFST 1367732 Score = 25.0 bits (53), Expect = 3.4 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +2 Query: 26 KIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSN 71 KI K+ ++ KFI ++NFI IK I IL + L SN Sbjct: 685808 KIEKQKLIYKKFIKKLLNFI------IKKNI*ILIFKYNNFLK*SN 685927 Score = 25.0 bits (53), Expect = 3.4 Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = -2 Query: 5 KENKKNADYEIFLR--DRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIF 62 + N + +++F+R + +K + IR + +++ + K + + +KT +N L +F Sbjct: 585376 RSNYRVESFKLFIR*IRKFVKVQ*IRFSGLVGFNYMIVLSEC*KPLYSLVKTSVNFLVLF 585197 Query: 63 FK 64 +K Sbjct: 585196 YK 585191 Score = 24.6 bits (52), Expect = 4.5 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 Query: 31 NALHNKFILPIINFIKGIINFIKTVINILAIFFKTLL 67 N +N F+ I+ +K +IN I V ++ AIF +L Sbjct: 604817 NKSNNSFVC-IVASLKYVINDINAVFHLFAIFVNVVL 604924 Score = 24.6 bits (52), Expect = 4.5 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%) Frame = +2 Query: 39 LPII---NFIKGIINFIKTVINILAIFFKTLLGQSNTS 73 +PII NF+K INF +I L + T+LGQ+ T+ Sbjct: 1734674 IPIIFDTNFVKFNINFNDNIIISLF*YSITVLGQTVTN 1734787 Score = 24.3 bits (51), Expect = 5.9 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Frame = +2 Query: 22 LKYEKIRKRNALHNKFIL------PIINFIKGIINFIKTVINILAIFF 63 LKY+ I K N IL I N + IN IK +IN + IFF Sbjct: 869639 LKYKNILK*KC**NNLIL*A*IPTNIKNSLYPTINLIKNIINNV*IFF 869782 >emb|CR940353.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN PROGRESS *** Length = 1842271 Score = 26.9 bits (58), Expect = 0.91 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +1 Query: 31 NALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDD 84 N + + +I+ +NFIKGI++ ILA + G+S S G +D D Sbjct: 863602 NRIFS*YIILRMNFIKGIVD------GILATDIDSNTGKSKYSYDPGGAQDDSD 863745 Score = 24.6 bits (52), Expect = 4.5 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -3 Query: 37 FILPIINFIKGIINFIKTVINILAIFFKTLL 67 F+LP + F +I+FI I IF+ L+ Sbjct: 944108 FVLPFVTFFDFLISFINFFIRFDLIFYFFLI 944016 Score = 24.3 bits (51), Expect = 5.9 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%) Frame = -1 Query: 35 NKFILPIINFIKGIINF-------IKTVINILAIFFKTLLGQSNTSQSSNGKNND 82 ++ I+P I+FIK +N+ I TV + + + L+ + +NG NND Sbjct: 1055422 SEIIIPYIHFIKSALNYTDSEYKDIFTVNLVNMVDTEDLVLNNLIKLMNNGGNND 1055258 Score = 23.9 bits (50), Expect = 7.7 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -2 Query: 34 HNKFILPIINFIKGIINFIKTVINIL 59 HN+FIL II+ I+ I + V+N++ Sbjct: 1088142 HNEFILQIISEIRYNIEVSR*VLNVI 1088065 Database: genome.fa Posted date: Jan 19, 2010 5:09 PM Number of letters in database: 8,358,125 Number of sequences in database: 8 Lambda K H 0.320 0.140 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,031,644 Number of Sequences: 8 Number of extensions: 16199 Number of successful extensions: 202 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 62 Number of HSP's gapped (non-prelim): 183 length of query: 116 length of database: 2,786,041 effective HSP length: 78 effective length of query: 38 effective length of database: 2,785,417 effective search space: 105845846 effective search space used: 105845846 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)