TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: genome.fa 
           113 sequences; 29,453,142 total letters

Searching........................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAFD02000009.1| Thalassiosira pseudonana CCMP1335 chromosome ...    26   4.3  
gb|AAFD02000024.1| Thalassiosira pseudonana CCMP1335 chromosome ...    26   5.6  
gb|AAFD02000026.1| Thalassiosira pseudonana CCMP1335 chromosome ...    25   7.3  
gb|AAFD02000008.1| Thalassiosira pseudonana CCMP1335 chromosome ...    25   7.3  

>gb|AAFD02000009.1| Thalassiosira pseudonana CCMP1335 chromosome 5 THAPSchr_5_Cont9, whole
              genome shotgun sequence
          Length = 2305972

 Score = 26.2 bits (56), Expect = 4.3
 Identities = 9/19 (47%), Positives = 17/19 (89%)
 Frame = -2

Query: 12     DYEIFLRDRKLKYEKIRKR 30
              ++EIF RD++++Y+K R+R
Sbjct: 252552 EFEIFERDQQMRYQKERER 252496


>gb|AAFD02000024.1| Thalassiosira pseudonana CCMP1335 chromosome 14 THAPSchr_14_Cont24, whole
              genome shotgun sequence
          Length = 998643

 Score = 25.8 bits (55), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 92     RTGGLPKSRIMELKNLGTCL 111
              R GGLP +R+M++ N G  L
Sbjct: 598576 RAGGLPVARVMDVSNCGRWL 598635


>gb|AAFD02000026.1| Thalassiosira pseudonana CCMP1335 chromosome 15 THAPSchr_15_Cont26, whole
              genome shotgun sequence
          Length = 668626

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -1

Query: 4      RKENKKNADYEIFLRDRKLKYEKIR 28
              ++ENKK  D +++L+DR  + E+++
Sbjct: 616939 KRENKKVHDEKVYLKDRLEELEEVK 616865


>gb|AAFD02000008.1| Thalassiosira pseudonana CCMP1335 chromosome 4 THAPSchr_4_Cont8, whole
              genome shotgun sequence
          Length = 1132590

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 14     EIFLRDRKLKYEKIRKRNALH 34
              EI  RD+K+ +EK+  R+A H
Sbjct: 713550 EIISRDKKVGHEKVASRHARH 713612


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:14 PM
  Number of letters in database: 29,453,142
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,058,096
Number of Sequences: 113
Number of extensions: 13834
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 7
length of query: 116
length of database: 9,817,714
effective HSP length: 86
effective length of query: 30
effective length of database: 9,807,996
effective search space: 294239880
effective search space used: 294239880
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)