TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from XP_001348206.1 # QUERY (116 letters) Database: genome.fa 2809 sequences; 26,957,458 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_viv... 77 1e-15 Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_viv... 29 0.47 Plasmodium_vivax_SaI-1|ctg_6950|2005-09-01|ds-DNA|Plasmodium_viv... 29 0.61 Plasmodium_vivax_SaI-1|ctg_7022|2005-09-01|ds-DNA|Plasmodium_viv... 28 1.0 Plasmodium_vivax_SaI-1|ctg_7179|2005-09-01|ds-DNA|Plasmodium_viv... 28 1.4 Plasmodium_vivax_SaI-1|ctg_7169|2005-09-01|ds-DNA|Plasmodium_viv... 27 1.8 Plasmodium_vivax_SaI-1|ctg_4965|2005-09-01|ds-DNA|Plasmodium_viv... 27 2.3 Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_viv... 27 2.3 Plasmodium_vivax_SaI-1|ctg_7061|2005-09-01|ds-DNA|Plasmodium_viv... 27 2.3 Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_viv... 27 2.3 Plasmodium_vivax_SaI-1|ctg_7187|2005-09-01|ds-DNA|Plasmodium_viv... 27 2.3 Plasmodium_vivax_SaI-1|ctg_6854|2005-09-01|ds-DNA|Plasmodium_viv... 27 2.3 Plasmodium_vivax_SaI-1|ctg_4347|2005-09-01|ds-DNA|Plasmodium_viv... 27 3.0 Plasmodium_vivax_SaI-1|ctg_4771|2005-09-01|ds-DNA|Plasmodium_viv... 27 3.0 Plasmodium_vivax_SaI-1|ctg_5253|2005-09-01|ds-DNA|Plasmodium_viv... 26 4.0 Plasmodium_vivax_SaI-1|ctg_6569|2005-09-01|ds-DNA|Plasmodium_viv... 26 4.0 Plasmodium_vivax_SaI-1|ctg_6991|2005-09-01|ds-DNA|Plasmodium_viv... 26 5.2 Plasmodium_vivax_SaI-1|ctg_6840|2005-09-01|ds-DNA|Plasmodium_viv... 26 5.2 Plasmodium_vivax_SaI-1|ctg_6589|2005-09-01|ds-DNA|Plasmodium_viv... 25 6.8 Plasmodium_vivax_SaI-1|ctg_6899|2005-09-01|ds-DNA|Plasmodium_viv... 25 6.8 Plasmodium_vivax_SaI-1|ctg_6871|2005-09-01|ds-DNA|Plasmodium_viv... 25 6.8 Plasmodium_vivax_SaI-1|ctg_4755|2005-09-01|ds-DNA|Plasmodium_viv... 25 8.8 Plasmodium_vivax_SaI-1|ctg_7165|2005-09-01|ds-DNA|Plasmodium_viv... 25 8.8 >Plasmodium_vivax_SaI-1|ctg_6877|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2031768 Score = 77.4 bits (189), Expect = 1e-15 Identities = 34/60 (56%), Positives = 50/60 (83%), Gaps = 1/60 (1%) Frame = -2 Query: 1 MDDRKENKKN-ADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINIL 59 M+ ++EN++N +YE L+DRKLKYEK+RK++ALHN+FI PI+N I +INF+KT+ NI+ Sbjct: 1951283 MNRKRENQENEGEYENILKDRKLKYEKLRKKSALHNRFITPIVNLINSVINFLKTLFNIV 1951104 Score = 64.7 bits (156), Expect = 1e-11 Identities = 32/41 (78%), Positives = 35/41 (85%), Gaps = 1/41 (2%) Frame = -3 Query: 77 NGKNNDDDDGFF-KKKRTGGLPKSRIMELKNLGTCLGSTXG 116 +G+NND DD FF KKK+TG L KSRIMELKNLGTCLGST G Sbjct: 1950676 SGRNNDGDDDFFNKKKKTGNLQKSRIMELKNLGTCLGST*G 1950554 Score = 26.2 bits (56), Expect = 4.0 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -3 Query: 5 KENKKNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFK 64 KE +N Y + KYE+I+ ++ FI+P N G INF I+ +F Sbjct: 384643 KEKYQNDKYVVADHIHISKYEQIKNNCKNNSHFIIPQRN-QNGYINFYSQFIDHKLLFIT 384467 Query: 65 TL 66 L Sbjct: 384466 AL 384461 Score = 25.8 bits (55), Expect = 5.2 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -1 Query: 86 GFFKKKRTGGLPKSRIMELKNLGTCLGST 114 GFF ++ GG P+ + L +G C+ T Sbjct: 1467207 GFF*SRKLGGQPRRALPGLAEIGKCIRCT 1467121 Score = 25.4 bits (54), Expect = 6.8 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = -2 Query: 59 LAIFFKTLLGQSNTS 73 LAIFFKTL G SN S Sbjct: 1950881 LAIFFKTLFGLSNGS 1950837 >Plasmodium_vivax_SaI-1|ctg_7202|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2132789 Score = 29.3 bits (64), Expect = 0.47 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 58 ILAIFFKTLLGQSNTSQSSNGKNNDDDD 85 +L +FFK LLG++ T+ +NG N+ D Sbjct: 597265 LLCVFFKKLLGKNKTNARANG*TNERAD 597182 Score = 25.0 bits (53), Expect = 8.8 Identities = 9/24 (37%), Positives = 18/24 (75%) Frame = +1 Query: 69 QSNTSQSSNGKNNDDDDGFFKKKR 92 + +TS+S+NG +++D+D K K+ Sbjct: 1462129 EHSTSESNNGSDDEDEDSDEKDKK 1462200 >Plasmodium_vivax_SaI-1|ctg_6950|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1370936 Score = 28.9 bits (63), Expect = 0.61 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = +1 Query: 49 INFIKTVINILAIFFKTLLGQSNTSQSSNGKN 80 +NF + ++L +FFK+++ +S + Q+ N KN Sbjct: 81847 LNFAIKMFDVLTLFFKSVISESGSFQTIN*KN 81942 Score = 26.2 bits (56), Expect = 4.0 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = +3 Query: 26 KIRKRNALHNKFILPIINFIKGIINFIKTVINILAIF---FKTLL 67 ++ KRN+ H+ F + I IINFI ++NI IF FKT + Sbjct: 815709 RVNKRNS-HHSFCIHI-----KIINFIIIIVNIF*IFGYIFKTFI 815825 Score = 25.8 bits (55), Expect = 5.2 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 18 RDRKLKYEKIRKRNALHNKFILPIINFIKG-IINFIKTVINILAIFFKTLL 67 R R+ Y +I K+ ++ F NF I N+I INI IFF T L Sbjct: 56862 RTRQYMYIRIYKKTQMNITFY----NFFSR*IFNYINLAINITYIFFFTPL 57002 Score = 25.0 bits (53), Expect = 8.8 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +3 Query: 3 DRKENKKNADYEIFLRDRKLKYEKIRKR 30 +R + N++YE +LR ++YEK K+ Sbjct: 1150206 NRNASSANSEYENYLRSIMVQYEKEEKQ 1150289 >Plasmodium_vivax_SaI-1|ctg_7022|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1165049 Score = 28.1 bits (61), Expect = 1.0 Identities = 13/42 (30%), Positives = 26/42 (61%) Frame = -2 Query: 22 LKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFF 63 L+ ++ +KRN L N F++ F ++NF++T++ +FF Sbjct: 954976 LQTQE*KKRNLLINLFVI----FSLSMLNFLQTLLPFFGVFF 954863 >Plasmodium_vivax_SaI-1|ctg_7179|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1986252 Score = 27.7 bits (60), Expect = 1.4 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Frame = +3 Query: 10 NADYEIFLRDRKLKYEKIRKRNALHNKFI------LPIINFIKGII--NFIKTVINILAI 61 N Y FL+ Y+K +KR +HN F+ L + N K + F+KT I + Sbjct: 1971198 NCIYRAFLQH---VYKKKKKRTTIHNPFLKKYSLNLKMYNEKKKNLMEYFLKTSIQNY*L 1971368 Query: 62 FFKTLLGQSNTSQSSNGKNNDDDDGFFKKKR 92 F L S S GK N D F K R Sbjct: 1971369 FI*RKLEYKKGSFSLGGK*NYDQRLFHDKNR 1971461 Score = 26.9 bits (58), Expect = 2.3 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 79 KNNDDDDGFFKKKRTGGLPKSRIMELKNLGT 109 K N DDGFF R +P R+ L NLG+ Sbjct: 384890 KRNHADDGFFPPVRGEYVPV*RLTALGNLGS 384982 >Plasmodium_vivax_SaI-1|ctg_7169|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 2021996 Score = 27.3 bits (59), Expect = 1.8 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +2 Query: 68 GQSNTSQSSNGKNNDDDDGF 87 G+ TSQ+ NGKNND ++ + Sbjct: 1210112 GKECTSQNENGKNNDSENDY 1210171 Score = 26.9 bits (58), Expect = 2.3 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +1 Query: 2 DDRKENKKNAD-YEIFLRDRKLKYEKIRKRNALHNKFILPIINFIK 46 D RK+NKK+ Y + RK Y K K+ +LH I F+K Sbjct: 1567447 DKRKKNKKSKRCYSNVNKGRKEIYNKTMKKGSLHRMKNSKIKGFVK 1567584 >Plasmodium_vivax_SaI-1|ctg_4965|2005-09-01|ds- DNA|Plasmodium_vivax_TIGR Length = 5738 Score = 26.9 bits (58), Expect = 2.3 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 43 NFIKGIINFIKTVINILAIFFKTLL 67 +FI +IN KTV + AIFFKT + Sbjct: 3320 SFIHYLINMKKTVTIMFAIFFKTYI 3246 >Plasmodium_vivax_SaI-1|ctg_7052|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1198945 Score = 26.9 bits (58), Expect = 2.3 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 11/67 (16%) Frame = -2 Query: 43 NFIKGIINF---IKTVI-NILAIFFKTLLGQSNTSQSSNGKNNDDDDGFFKKK------- 91 NF+ G + + T+I NIL+ FF LGQ N S + D+G K + Sbjct: 1128336 NFLSGQLASSPRVHTLIKNILSFFFFFFLGQQNRHSESKN*HIKPDEGRLKVRLHLARGE 1128157 Query: 92 RTGGLPK 98 R GG P+ Sbjct: 1128156 RVGGPPE 1128136 Score = 25.4 bits (54), Expect = 6.8 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%) Frame = -2 Query: 4 RKENKKNA----DYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINIL 59 + +NK+NA Y L RK K ++I+K+ +L+ +P+ I I L Sbjct: 825579 KNKNKRNALKGKAYVKKLILRKQKKDEIKKKKSLN----IPVEKKIP-------RSIERL 825433 Query: 60 AIFFKTLLGQSNTSQSSNGKNNDDDDGFFKKKR 92 AIF + + + N N K D+ +FK+++ Sbjct: 825432 AIFDENKINEENEKFLLNEKCIDEFSDYFKQRK 825334 >Plasmodium_vivax_SaI-1|ctg_7061|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 984623 Score = 26.9 bits (58), Expect = 2.3 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +1 Query: 13 YEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTL 66 Y++F+ + K +K++ + N I I F K I+ +IKT+INI+ +F L Sbjct: 804835 YDVFMTNSF*KKML*KKKDIIKNFII--I*KFCKKIV-YIKTIINIIILFLYRL 804987 >Plasmodium_vivax_SaI-1|ctg_6977|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1923364 Score = 26.9 bits (58), Expect = 2.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 69 QSNTSQSSNGKNNDDDDGFFKKKRTGGLP 97 +S T S NG+NN + +G KKK+ P Sbjct: 682085 RSATGNSRNGRNNKNSEGKKKKKKLTSKP 681999 Score = 25.0 bits (53), Expect = 8.8 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 77 NGKNNDDDDGFFK 89 NG NNDDD FF+ Sbjct: 1659980 NGPNNDDDKNFFQ 1659942 >Plasmodium_vivax_SaI-1|ctg_7187|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 513347 Score = 26.9 bits (58), Expect = 2.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -3 Query: 67 LGQSNTSQSSNGKNNDDDDGFFKKKRTG 94 +GQS + G+N DD++G KKK+ G Sbjct: 140739 VGQSASRGRGLGENPDDEEGDAKKKKDG 140656 >Plasmodium_vivax_SaI-1|ctg_6854|2005-09-01|ds- DNA|Plasmodium_vivax_TIGR Length = 646 Score = 26.9 bits (58), Expect = 2.3 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 67 LGQSNTSQSSNGKNNDDDDGFFKKKRTG 94 +GQS + G+N DD++G KKK+ G Sbjct: 263 VGQSASRGRGLGENPDDEEGDAKKKKDG 346 >Plasmodium_vivax_SaI-1|ctg_4347|2005-09-01|ds- DNA|Plasmodium_vivax_TIGR Length = 3845 Score = 26.6 bits (57), Expect = 3.0 Identities = 19/51 (37%), Positives = 27/51 (52%) Frame = +3 Query: 13 YEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFF 63 YEI L K K EK++ + N+F+ INF K +N+I + IFF Sbjct: 2508 YEICLYKNKTK-EKMKNIADIINQFL---INFQKYTVNYISLCYFLSRIFF 2648 >Plasmodium_vivax_SaI-1|ctg_4771|2005-09-01|ds- DNA|Plasmodium_vivax_TIGR Length = 2923 Score = 26.6 bits (57), Expect = 3.0 Identities = 13/57 (22%), Positives = 30/57 (52%) Frame = -2 Query: 15 IFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSN 71 ++L K+K +K + ++NK+ +P+I F +++ +L + F L G ++ Sbjct: 879 LYLLREKMKNDKKTYKKIIYNKYFIPLILF---------SLLPLLGLTFLVLFGSND 736 Score = 25.8 bits (55), Expect = 5.2 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +1 Query: 31 NALHNKFILPIINFIKGIINFIKTVINILAIFFKT 65 N++HNK + +N+IK I + IK+V + ++ T Sbjct: 1231 NSIHNKALNYYVNYIKQINDTIKSVTRDI*NYYDT 1335 >Plasmodium_vivax_SaI-1|ctg_5253|2005-09-01|ds- DNA|Plasmodium_vivax_TIGR Length = 3060 Score = 26.2 bits (56), Expect = 4.0 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -3 Query: 28 RKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKT 65 +K+N+LH ++ I +I N IK V I+ +F +T Sbjct: 2647 KKKNSLHYLKLISHIQYITQAYNKIK*VKKIMNVFLRT 2534 >Plasmodium_vivax_SaI-1|ctg_6569|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 533304 Score = 26.2 bits (56), Expect = 4.0 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +3 Query: 35 NKFILPIINFIKG----IINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDD 85 N IL +NF KG +NFI NI+++ + ++ S GKN+ D Sbjct: 14940 NGVILENLNFSKGEELFYLNFIMRYYNIVSLEWDDEYLENKESPEEEGKNDKGGD 15104 Score = 25.4 bits (54), Expect = 6.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 4 RKENKKNADYEIFLRDRKLKYEKIRKR 30 +K K NA+ F+R + LK EK RKR Sbjct: 17591 KKFQKGNAECAAFIRGQILKREKERKR 17511 >Plasmodium_vivax_SaI-1|ctg_6991|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 260516 Score = 25.8 bits (55), Expect = 5.2 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 5 KENKKNADYEIFLRDRKLKYEKIRKRNALHNKF 37 KEN K Y +R R+ +++KRN L+N F Sbjct: 222922 KENVKINKYI*HIRMRRTSVMRLKKRNNLNNHF 222824 >Plasmodium_vivax_SaI-1|ctg_6840|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 895497 Score = 25.8 bits (55), Expect = 5.2 Identities = 8/23 (34%), Positives = 18/23 (78%) Frame = +1 Query: 43 NFIKGIINFIKTVINILAIFFKT 65 N++KG+ + +++IN ++FF+T Sbjct: 874753 NYLKGVNSIFQSLINFSSLFFET 874821 >Plasmodium_vivax_SaI-1|ctg_6589|2005-09-01|ds- DNA|Plasmodium_vivax_TIGR Length = 4234 Score = 25.4 bits (54), Expect = 6.8 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 41 IINFIKGIINFIKTVINILAIFFKTLLGQSN 71 I+N +K +NFIKT +I K +L N Sbjct: 1054 IMNHLKNKVNFIKTTADIFIHMLKAVLHYIN 1146 >Plasmodium_vivax_SaI-1|ctg_6899|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 565852 Score = 25.4 bits (54), Expect = 6.8 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Frame = -2 Query: 70 SNTSQSSNGKNNDDDDGFFKK----KRTGGLPKSRIMELKN 106 SNTS SSN KN++ D FF + P S+I+ N Sbjct: 190389 SNTSNSSNNKNSNLLDYFFPNNYGLSKYTAYPISQILNYSN 190267 >Plasmodium_vivax_SaI-1|ctg_6871|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 1012632 Score = 25.4 bits (54), Expect = 6.8 Identities = 20/53 (37%), Positives = 27/53 (50%) Frame = +2 Query: 10 NADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIF 62 NA +EIF + K+R L N+F+ I FI GII K+V +L F Sbjct: 253403 NAIHEIFKF-----FPKLRIGERLLNRFVHRICVFINGIIVHGKSVDELLYNF 253546 >Plasmodium_vivax_SaI-1|ctg_4755|2005-09-01|ds- DNA|Plasmodium_vivax_TIGR Length = 3118 Score = 25.0 bits (53), Expect = 8.8 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 24 YEKIRKRNALHNKFILPIINFIKGIINFIKTVINIL 59 Y + K+N L F L INF +INF +T+ NI+ Sbjct: 235 YVNL*KKNNLFFVFSL-YINFCINLINFQETISNII 339 >Plasmodium_vivax_SaI-1|ctg_7165|2005-09-01|ds-DNA|Plasmodium_vivax_TIGR Length = 54073 Score = 25.0 bits (53), Expect = 8.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 36 KFILPIINFIKGIINFIKTVINILAIFFKTLL 67 KFIL N I+ K +IN++ IFFK ++ Sbjct: 40571 KFILDFFNCTT-ILKLKKFIINLMFIFFKKII 40663 Database: genome.fa Posted date: Feb 10, 2010 10:02 AM Number of letters in database: 26,957,458 Number of sequences in database: 2809 Lambda K H 0.320 0.140 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,582,952 Number of Sequences: 2809 Number of extensions: 54960 Number of successful extensions: 543 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 258 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 543 length of query: 116 length of database: 8,985,819 effective HSP length: 85 effective length of query: 31 effective length of database: 8,747,054 effective search space: 271158674 effective search space used: 271158674 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)