TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from XP_001348206.1 # QUERY (116 letters) Database: genome.fa 14 sequences; 23,462,190 total letters Searching..............done Score E Sequences producing significant alignments: (bits) Value Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds-DNA|Plasmod... 72 8e-14 Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds-DNA|Plasmod... 30 0.25 Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds-DNA|Plasmod... 29 0.43 Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds-DNA|... 29 0.56 Plasmodium_knowlesi_strain_H|PK4.chr09|2007-02-22|ds-DNA|Plasmod... 28 0.74 Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds-DNA|Plasmod... 27 1.6 Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds-DNA|Plasmod... 27 2.1 Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds-DNA|Plasmodium_... 27 2.1 Plasmodium_knowlesi_strain_H|chr02|2007-02-22|ds-DNA|Plasmodium_... 26 3.7 Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds-DNA|Plasmodium_... 26 3.7 Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds... 25 8.2 >Plasmodium_knowlesi_strain_H|PK4.chr13|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 2200295 Score = 71.6 bits (174), Expect = 8e-14 Identities = 33/60 (55%), Positives = 46/60 (76%), Gaps = 1/60 (1%) Frame = -3 Query: 1 MDDRKENKKN-ADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINIL 59 M+ +KEN++N +YE LRDRKLKYE +RK++ LHN+F+ PI N I INF+KT+ NI+ Sbjct: 2085057 MNRKKENQENEGEYENVLRDRKLKYENLRKKSTLHNRFMSPIFNLINSAINFLKTLFNIV 2084878 Score = 58.9 bits (141), Expect = 5e-10 Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 1/49 (2%) Frame = -3 Query: 69 QSNTSQSSNGKNNDDDDGFFKKKRT-GGLPKSRIMELKNLGTCLGSTXG 116 ++ SQ+ G+N D DD FF KKR G L KSR+MELKNLGTCLGS+ G Sbjct: 2084487 RATLSQTLGGRNGDGDDDFFNKKRKMGTLQKSRMMELKNLGTCLGSS*G 2084341 Score = 29.3 bits (64), Expect = 0.43 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = -3 Query: 68 GQSNTSQSSNGKN-NDDDDGFFKKKRTGGLPKSRIMELKNLG 108 G N +SNG N N+ ++ KKRTGG K + ++ KN G Sbjct: 610926 GNDNVGDNSNGGNINEGNNNKVMKKRTGG-KKKKTIKKKNPG 610804 Score = 28.9 bits (63), Expect = 0.56 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 3/30 (10%) Frame = +1 Query: 41 IINFIKGIINFIKTVI---NILAIFFKTLL 67 I++F+K I+NF++ +I +L IFF+ L+ Sbjct: 2162164 IVSFVKIIVNFVRIIIVFFRVLIIFFRILI 2162253 Score = 27.7 bits (60), Expect = 1.3 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = -3 Query: 5 KENKKNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFK 64 KE +N Y + KYE+I+ ++ FI+P N G INF I+ +F Sbjct: 402954 KEKYQNDKYVVADHISISKYEQIKNNCKNNSHFIIPQRN-QNGYINFYSQFIDNKLLFIT 402778 Query: 65 TL 66 TL Sbjct: 402777 TL 402772 Score = 27.3 bits (59), Expect = 1.6 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +1 Query: 69 QSNTSQSSNGKNNDDDDGFFKKKRTGGLPKSRI 101 +S+TS+SS KNN D+D K++ K+++ Sbjct: 93823 KSSTSKSSTDKNNYDEDAEGSKQKKRNTEKTKV 93921 Score = 25.4 bits (54), Expect = 6.2 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = -3 Query: 59 LAIFFKTLLGQSNTS 73 LAIFFKTL G SN S Sbjct: 2084679 LAIFFKTLFGLSNGS 2084635 Score = 25.4 bits (54), Expect = 6.2 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Frame = +1 Query: 13 YEIFLRDRKLKYEKIRKRNAL--HNKFILPII 42 Y + L+DR+ EK +K+ H K+ILP + Sbjct: 1564672 YNLCLKDRRTVKEKKKKKKKKKRHTKYILPCV 1564767 Score = 25.0 bits (53), Expect = 8.2 Identities = 21/78 (26%), Positives = 36/78 (46%) Frame = +1 Query: 1 MDDRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILA 60 M ++ ++N E L D + +E IRK + N +I NFIK I ++ + Sbjct: 701161 MQNKCRRRRNR-IEKALLDIRHVFETIRKNHINENVYIYNEGNFIKAIRKGHWVLVKHVH 701337 Query: 61 IFFKTLLGQSNTSQSSNG 78 + +LL + N+ NG Sbjct: 701338 LSTPSLLDRLNSLFEENG 701391 Score = 25.0 bits (53), Expect = 8.2 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 8/52 (15%) Frame = +3 Query: 43 NFIKGIINFIKTVINIL-----AIF-FKT--LLGQSNTSQSSNGKNNDDDDG 86 N +K ++ I+ +++I+ +IF KT LLG+ T+ + + +DD +G Sbjct: 2104368 NIVKDHVSIIQLIVSIITEERNSIFELKTEMLLGRGGTASNGDDTGSDDSEG 2104523 >Plasmodium_knowlesi_strain_H|PK4.chr03|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 973297 Score = 30.0 bits (66), Expect = 0.25 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -2 Query: 5 KENKKNADYEIFLRDRKLKYEKIRKR--NALHNKFILPII 42 K+ KK YE+ R +K KYE++RK+ LHN +P + Sbjct: 193197 KKKKKKKKYEL-ARKKKKKYEQVRKKKEKKLHNGKYIPCV 193081 Score = 26.2 bits (56), Expect = 3.7 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = -2 Query: 34 HNKFILPIINFIKGIINFIKTVINILAIFF 63 HN F+LPI K F++ + + IF+ Sbjct: 244029 HNNFLLPIFRIHKYYCTFLQLIFHAFFIFY 243940 Score = 25.0 bits (53), Expect = 8.2 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -3 Query: 64 KTLLGQSNTSQSSNGKNNDDDDG 86 K L+G + SQS NG+N +D+DG Sbjct: 288212 KDLIG-TTPSQSQNGQNCNDNDG 288147 >Plasmodium_knowlesi_strain_H|PK4.chr01|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 838594 Score = 29.3 bits (64), Expect = 0.43 Identities = 8/25 (32%), Positives = 19/25 (76%) Frame = +3 Query: 37 FILPIINFIKGIINFIKTVINILAI 61 F+ ++NF++ ++NF++ V+N L + Sbjct: 651030 FLRVVVNFLRVVVNFLRVVVNFLRV 651104 Score = 29.3 bits (64), Expect = 0.43 Identities = 8/25 (32%), Positives = 19/25 (76%) Frame = +3 Query: 37 FILPIINFIKGIINFIKTVINILAI 61 F+ ++NF++ ++NF++ V+N L + Sbjct: 651051 FLRVVVNFLRVVVNFLRVVVNFLRV 651125 Score = 27.3 bits (59), Expect = 1.6 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Frame = -3 Query: 70 SNTSQSSNGKNNDDDDGFFKK----KRTGGLPKSRIMELKN 106 SNTS SSN KN + D FF + G P S+I+ N Sbjct: 225815 SNTSNSSNNKNGNLLDYFFPNNYGLSKYTGYPISQILNYSN 225693 Score = 27.3 bits (59), Expect = 1.6 Identities = 10/33 (30%), Positives = 22/33 (66%) Frame = +3 Query: 37 FILPIINFIKGIINFIKTVINILAIFFKTLLGQ 69 F+ ++NF++ ++NF++ V +L + F +L Q Sbjct: 651072 FLRVVVNFLRVVVNFLRVVNFLLVVNFLRVLVQ 651170 Score = 25.0 bits (53), Expect = 8.2 Identities = 8/26 (30%), Positives = 18/26 (69%) Frame = +3 Query: 36 KFILPIINFIKGIINFIKTVINILAI 61 +FI + F++ ++NF++ V+N L + Sbjct: 651006 RFIDAAV*FLRVVVNFLRVVVNFLRV 651083 >Plasmodium_knowlesi_strain_H|PK4.chr12.pseudo|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 3128370 Score = 28.9 bits (63), Expect = 0.56 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 12/51 (23%) Frame = +1 Query: 4 RKENKKNADYEIFLRDRKLKYEKI------------RKRNALHNKFILPII 42 +K+ KK A Y IF + + +++E++ +K+NA + K +LPI+ Sbjct: 2800429 KKKKKKKAKYCIFYKAKYMEFERLTP*TFLDEKKKKKKKNA*NGKDVLPIL 2800581 Score = 27.3 bits (59), Expect = 1.6 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -3 Query: 4 RKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTV 55 R +K N YEI + +K K +K +K+N I+ IK + I+T+ Sbjct: 119896 RNSDKNNIQYEIKKKKKKKKKKKKKKKNT-------SILTRIKSRMRLIRTI 119762 Score = 25.0 bits (53), Expect = 8.2 Identities = 17/66 (25%), Positives = 29/66 (43%) Frame = +1 Query: 4 RKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFF 63 +K+ KKN +YEIF +KY F + ++NF + +++ +F Sbjct: 2156806 KKKKKKNRNYEIFK*KCDIKY------------FFVTLVNFHMFLFKMQVAILSE*VMFC 2156949 Query: 64 KTLLGQ 69 T L Q Sbjct: 2156950 ITALAQ 2156967 >Plasmodium_knowlesi_strain_H|PK4.chr09|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 2147124 Score = 28.5 bits (62), Expect = 0.74 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 6 ENKKNADYEIFLRDRKLKYEKIRKRNALHN 35 EN K +Y FLR +K K +K +K+N+ N Sbjct: 1565421 EN*KKKNYNFFLRIKKKKKKKKKKKNSTKN 1565510 Score = 27.7 bits (60), Expect = 1.3 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +2 Query: 8 KKNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIK 53 KKN ++ FLR++K ++ K+ + K L + N K + N IK Sbjct: 1587182 KKNTNFRTFLRNQKCTKGQLAKKAKSNEKLHLLVNNISKLVKNKIK 1587319 Score = 26.2 bits (56), Expect = 3.7 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 68 GQSNTSQSSNGKNNDDDDGFFKKKRTGGLPKSRIMELKNLGTC-LGSTXG 116 G+SN ++ ++ + F KKK G +PK R + K G+ +G+T G Sbjct: 697920 GRSNGVSTTQRRSPQNRSHFPKKKEGGVVPKERERKKKKKGSKEMGNTEG 698069 Score = 25.4 bits (54), Expect = 6.2 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 42 INFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSN 77 ++F+KGI ++K +INI F+ ++T N Sbjct: 1143903 VDFLKGIFLYVKNMINIYYDIFEKEKKNTSTQMRRN 1144010 Score = 25.4 bits (54), Expect = 6.2 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +1 Query: 31 NALHNKFILPIINFIKGIINFIKTVINILAIF--FKTLLG 68 N LHN I+P++NF+ + ++ I F F+ +G Sbjct: 2015509 NILHNAVIIPLMNFLSHPFRYTMELVLIAFAFRPFRPCIG 2015628 Score = 25.0 bits (53), Expect = 8.2 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 Query: 77 NGKNNDDDDGFFK 89 NG NNDDD FF+ Sbjct: 1791282 NGPNNDDDKNFFQ 1791244 Score = 25.0 bits (53), Expect = 8.2 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -3 Query: 4 RKENKKNADYEIFLR---DRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINI 58 +K+ KK A Y +EK +K+ N + I+N + F KT+++I Sbjct: 277018 KKKKKKRASYTCIYAVPFQFT*TFEKKKKKKKKKNSLVYTIVNI*MRLCGFSKTLLSI 276845 Score = 25.0 bits (53), Expect = 8.2 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Frame = -1 Query: 14 EIFLRDRKLKYEK---IRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQS 70 E++ + K Y+K ++ RN + K + +N+I +N ++T + IF+ +++ Sbjct: 155379 ELYNEETKTFYKKKKSVKFRNIIMPKQLAIYVNYIGRNMNLVETRKQLDEIFYLSVM-YM 155203 Query: 71 NTSQSSNGKNND 82 NT++ + +ND Sbjct: 155202 NTTRFNYCTSND 155167 >Plasmodium_knowlesi_strain_H|PK4.chr02|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 1770351 Score = 27.3 bits (59), Expect = 1.6 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Frame = -1 Query: 17 LRDRKLKYEKIRKRNALHNKF---ILPIINFIKGIINFIKTVINIL 59 +RD +L EKI+ L N I+P++ F+ GI++ +K + I+ Sbjct: 310530 IRDHELVKEKIKHVAELSNLIDLKIIPLLMFLNGIVDKLKGYLLII 310393 Score = 26.2 bits (56), Expect = 3.7 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Frame = +3 Query: 21 KLKYEKIRKRNALHNKFILPIINFI-----KGIINFIKTVINILAIFFKT--LLGQSNTS 73 K+ KI +RN ++N + I+N+I +I+F+ + IF +T + G + S Sbjct: 784041 KIDIIKIGRRNLVNNLYTSEILNYIYYNTLYVLIHFVMNIRFYETIFRRTYKVSGVVSDS 784220 Query: 74 QSSNGKNNDDDDGFFKKKRTGG 95 + G D +G R GG Sbjct: 784221 TADVGFCGGDGEGMCSFVRIGG 784286 Score = 25.8 bits (55), Expect = 4.8 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +1 Query: 10 NADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVIN 57 +AD E ++ KLK +KI +N + + IN+++ +N K N Sbjct: 514480 SADVENKCKEAKLKKKKINPKNEEEMEEVNTYINYLEEQLNITKNYEN 514623 Score = 25.8 bits (55), Expect = 4.8 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 12/63 (19%) Frame = +1 Query: 9 KNADYEIFLRDRKLKYEKIRKRNAL--HNKFILPII--------NFIKGII--NFIKTVI 56 K+ +YE F+ K +YE I + N L ++ FI I+ NF + II +KT+I Sbjct: 1592893 KHTNYEEFILASKYQYELINRNNLLVKNDVFIFSILRKSMTILFNFNEQIIYKEVLKTII 1593072 Query: 57 NIL 59 ++ Sbjct: 1593073 YLI 1593081 >Plasmodium_knowlesi_strain_H|PK4.chr07|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 1496036 Score = 26.9 bits (58), Expect = 2.1 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 50 NFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDD 83 NF KT + + +FK +L + + S NNDD Sbjct: 491155 NFKKTDLGKMKNYFKNILSSNAKDEESKYNNNDD 491256 Score = 25.4 bits (54), Expect = 6.2 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%) Frame = -3 Query: 12 DYEIFLRDRKLKYEKIRKRNALHNKFI-LPIIN-----FIKGIINFIKTVINILAIFFKT 65 DY F+ YE I++ L++ F +P++N + G+I+ IK +INI K Sbjct: 1349313 DYNSFIN-----YETIKR--ILNSGFSRIPVLNRCNSECVVGLIH-IKDLINIWFGINKI 1349158 Query: 66 LLGQSNTSQSSNGKNNDDDDGFFKKKRTG 94 + ++ Q +N + + KK RTG Sbjct: 1349157 IFDNNSLVQCRKRRNTNKHKYYKKKSRTG 1349071 >Plasmodium_knowlesi_strain_H|chr10|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 1486039 Score = 26.9 bits (58), Expect = 2.1 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +1 Query: 13 YEIFLRDRKLKYEKIRKRNALHNKFIL--PIINFIKGIINFIKTVINILAIFFKTLL 67 YEI R ++ RKRN +++ ++L + F + F I I IFF +L Sbjct: 186451 YEIIERQKRFALANRRKRNKIYHVYLLLYSYLLFADTLPIFTHIFIRIFFIFFTLIL 186621 Score = 26.6 bits (57), Expect = 2.8 Identities = 26/108 (24%), Positives = 43/108 (39%) Frame = -1 Query: 3 DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIF 62 D + N KN K KY+ +K+N + I N+ K I+N IK + + Sbjct: 519760 DEENNSKN-------NTNKNKYKNAKKKNNKRRSLSVLIPNYKKDIVNNIKLADKLYKL- 519605 Query: 63 FKTLLGQSNTSQSSNGKNNDDDDGFFKKKRTGGLPKSRIMELKNLGTC 110 N S + K+N K+++ KS+ ++L TC Sbjct: 519604 ------TRNKSSEESEKDNRMRRKNSKREKKNDSKKSKNKHRRSL-TC 519482 Score = 26.2 bits (56), Expect = 3.7 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = +2 Query: 23 KYEKIRKRNALHNKFILPII--NFIKGIINFIKTVINILAIFFKT 65 K E I K+ L N L N++KG+ + +++IN ++FF+T Sbjct: 1019393 KDELIVKKENLMNALSLTKYEYNYLKGLNSIFQSLINFSSLFFET 1019527 Score = 25.8 bits (55), Expect = 4.8 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +2 Query: 42 INFIKGIINFIKTVINILAIFFKTL 66 I F G +NF + N L IFFKTL Sbjct: 24062 ILFFHGHLNFYLPLKNTLLIFFKTL 24136 Score = 25.4 bits (54), Expect = 6.2 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Frame = +3 Query: 71 NTSQSSNGKNNDDDDGF------FKKKRTGGLPKSR 100 N SSN ++DDDDGF FK+ G K++ Sbjct: 1180143 NRGNSSNYDDDDDDDGFLSDVSRFKETHLVGKEKNK 1180250 >Plasmodium_knowlesi_strain_H|chr02|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 726886 Score = 26.2 bits (56), Expect = 3.7 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 12/71 (16%) Frame = -1 Query: 4 RKENKKNADYEIFLRDRKLKYEKIRK----RNALHN--------KFILPIINFIKGIINF 51 RKE K+ EI + RK + K +K R N K L + NF+ ++NF Sbjct: 8227 RKEKKRKGRNEIKKKRRKERNRKEKKGTK*RKEERNYK*FKEKKKIFLYLFNFLTVMLNF 8048 Query: 52 IKTVINILAIF 62 I ++ +++ F Sbjct: 8047 IYSLFSLVHFF 8015 Score = 25.0 bits (53), Expect = 8.2 Identities = 10/35 (28%), Positives = 18/35 (51%) Frame = +1 Query: 52 IKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDDG 86 + +IN+L + + S + G +N+DDDG Sbjct: 168544 VAQLINLLREIIRVPTRRGKNSHNGGGDDNNDDDG 168648 >Plasmodium_knowlesi_strain_H|chr14|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 3159096 Score = 26.2 bits (56), Expect = 3.7 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = -1 Query: 69 QSNTSQSSNGKNNDDDDGFFKKKRTGGLPKSRIMELK 105 QS +S+ ++ N+D+ +KK+ + K++ MELK Sbjct: 999057 QSESSKKNSNIANNDNIKLMEKKKKKKMSKTKTMELK 998947 Score = 26.2 bits (56), Expect = 3.7 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -3 Query: 4 RKENKKNADYEIFLRDRKLKYEKIRKR 30 +K+NK N DY +FL + K K +K +KR Sbjct: 875542 KKKNK*NTDYNVFLGELK-KKKKEKKR 875465 Score = 25.4 bits (54), Expect = 6.2 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = -3 Query: 17 LRDRKLKYEK--IRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQ 74 + DR L+Y + I+ + L K + IK I K+ IN L FFK G S Sbjct: 620272 INDRALRYHEDYIKSLDILEGKNR----SVIKEIFPNKKSEINEL--FFKRC-GSSTGVD 620114 Query: 75 SSNGKNNDDDD 85 +SNG N DDD Sbjct: 620113 TSNGVENLDDD 620081 Score = 25.0 bits (53), Expect = 8.2 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +3 Query: 22 LKYEKIRKRNALHNKFILPIINFIKGIINFI 52 ++ +K R+++H K L + NFI G++NFI Sbjct: 1937367 IRKKKKNVRSSIHIKVSL-LSNFITGVLNFI 1937456 Score = 25.0 bits (53), Expect = 8.2 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +1 Query: 17 LRDRKLKYEKIRKRNALHNKFILPIINFI--KGIINFIKTVI 56 +RD+ L K+R R A + +IL N I K ++ ++ TVI Sbjct: 2122678 IRDKMLSQAKVRLRRAGIHNYILLNSNHILLKKLVGYMDTVI 2122803 >Plasmodium_knowlesi_strain_H|PK4.chr11.pseudo.embl|2007-02-22|ds- DNA|Plasmodium_knowlesi_Sanger Length = 2372884 Score = 25.0 bits (53), Expect = 8.2 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 89 KKKRTGGLPKSRIMELKNLGTCLGS 113 KKKRTG +PK + K+L T +GS Sbjct: 1117306 KKKRTGKIPKD---QFKSLFTTVGS 1117371 Database: genome.fa Posted date: Feb 10, 2010 10:01 AM Number of letters in database: 23,462,190 Number of sequences in database: 14 Lambda K H 0.320 0.140 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,359,089 Number of Sequences: 14 Number of extensions: 53685 Number of successful extensions: 567 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 321 Number of HSP's gapped (non-prelim): 471 length of query: 116 length of database: 7,820,730 effective HSP length: 84 effective length of query: 32 effective length of database: 7,819,554 effective search space: 250225728 effective search space used: 250225728 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.6 bits)