TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01000307.1| Phytophthora sojae strain P6497 Psojae_Cont30...    29   1.4  
gb|AAQY01000835.1| Phytophthora sojae strain P6497 Psojae_Cont83...    27   7.1  

>gb|AAQY01000307.1| Phytophthora sojae strain P6497 Psojae_Cont307, whole genome shotgun
             sequence
          Length = 66150

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 66    LLGQSNTSQSSNGKNNDDDD 85
             LLG +NT  ++NG+N  DDD
Sbjct: 25458 LLGTNNTKTATNGRNRHDDD 25517


>gb|AAQY01000835.1| Phytophthora sojae strain P6497 Psojae_Cont835, whole genome shotgun
              sequence
          Length = 117969

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 27     IRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGK 79
              IR+ N L +K   P+ N +KG  N +          F+TL G ++  QSS GK
Sbjct: 101582 IRRSNELDDK--APLFNNVKGAKNGL----------FRTLGGPNSHRQSSKGK 101704


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.320    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,709,239
Number of Sequences: 5578
Number of extensions: 61287
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 278
length of query: 116
length of database: 26,017,032
effective HSP length: 91
effective length of query: 25
effective length of database: 25,509,434
effective search space: 637735850
effective search space used: 637735850
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)