TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: genome.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQX01000279.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    28   0.64 
gb|AAQX01000561.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    25   4.2  

>gb|AAQX01000279.1| Phytophthora ramorum strain Pr102 Pramorum_Cont279, whole genome
            shotgun sequence
          Length = 62633

 Score = 28.1 bits (61), Expect = 0.64
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 52   IKTVINILAIFFKTLLGQSNTSQSSNGKNNDD 83
            +K V+  + I F+ L+  S T   SNG+ N+D
Sbjct: 8698 LKLVVFTVLIRFQCLINSSRTQYHSNGRKNED 8603


>gb|AAQX01000561.1| Phytophthora ramorum strain Pr102 Pramorum_Cont561, whole genome
            shotgun sequence
          Length = 13871

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -2

Query: 10   NADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTL 66
            +A Y++ LR+  +KY   +  N L    +LP+     G+ N   T+  + +  F+ L
Sbjct: 3418 SAYYQVRLREDDIKYTAFQAPNGLWEYLVLPM-----GVCNAPATMHRLTSKLFRGL 3263


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:07 PM
  Number of letters in database: 14,903,514
  Number of sequences in database:  572
  
Lambda     K      H
   0.320    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,287,137
Number of Sequences: 572
Number of extensions: 11615
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 19
length of query: 116
length of database: 4,967,838
effective HSP length: 82
effective length of query: 34
effective length of database: 4,920,934
effective search space: 167311756
effective search space used: 167311756
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)