TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: genome.fa 
           218 sequences; 41,633,360 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_21                                                            28   1.1  
scaffold_23                                                            27   3.3  
scaffold_2                                                             27   4.3  
scaffold_28                                                            26   7.4  
scaffold_12                                                            25   9.7  

>scaffold_21 
          Length = 711696

 Score = 28.5 bits (62), Expect = 1.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 70     SNTSQSSNGKNNDDDDGFFKKK 91
              ++TS S+N KNND+DD   K+K
Sbjct: 702443 NDTSTSNNKKNNDNDDNNAKRK 702508


>scaffold_23 
          Length = 690264

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 59     LAIFFKTLLGQSNTSQSSNGKNND---DDDGFFKKKRTGG 95
              L  F  TLLG S  SQ++NG   D         KK+RT G
Sbjct: 444496 LGTFTTTLLGTSKGSQNNNGMLGDRHTQKSDLSKKQRTKG 444615



 Score = 25.8 bits (55), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 71   NTSQSSNGKNNDDDDGFFKKKRT 93
            +TS S+N +NNDDD+   +K ++
Sbjct: 6232 DTSTSNNNQNNDDDNNAKRKAQS 6164


>scaffold_2 
          Length = 3607471

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 70      SNTSQSSNGKNNDDDDGFFKKKRTGGLP 97
               SN++ +SN  NN++++ +F   R  G+P
Sbjct: 3047769 SNSNSNSNNNNNNNNNNYFFCSRCMGVP 3047852



 Score = 25.8 bits (55), Expect = 7.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 51    FIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDDD 85
             F+  + + +A   K     +N + ++N  N+DDDD
Sbjct: 13101 FLVQIAHCVAHLHKNTTVNNNNNNNNNNNNDDDDD 13205


>scaffold_28 
          Length = 614053

 Score = 25.8 bits (55), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 71    NTSQSSNGKNNDDDDGFFKKKRT 93
             +TS S+N +NNDDD+   +K ++
Sbjct: 12960 DTSTSNNNQNNDDDNNAKRKAQS 12892


>scaffold_12 
          Length = 1128436

 Score = 25.4 bits (54), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 64      KTLLGQSNTSQSSNGKNNDDDD 85
               +TLLG     +S N +NND D+
Sbjct: 1001516 ETLLGLQRPKRSPNSQNNDQDE 1001581


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:06 PM
  Number of letters in database: 41,633,360
  Number of sequences in database:  218
  
Lambda     K      H
   0.320    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,726,989
Number of Sequences: 218
Number of extensions: 34117
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 43
length of query: 116
length of database: 13,877,786
effective HSP length: 88
effective length of query: 28
effective length of database: 13,858,602
effective search space: 388040856
effective search space used: 388040856
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)