TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: genome.fa 
           306 sequences; 11,192,215 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AACB02000041.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    26   2.5  
gb|AACB02000003.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    25   5.7  
gb|AACB02000039.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    24   7.4  
gb|AACB02000019.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    24   7.4  
gb|AACB02000001.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    24   7.4  
gb|AACB02000017.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    24   9.7  
gb|AACB02000012.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02...    24   9.7  

>gb|AACB02000041.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_41, whole genome shotgun
             sequence
          Length = 81028

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 2     DDRKENKKNADYEIFLRDRKLKYEKIRK 29
             D  KE KK ADY+  + + K + ++IRK
Sbjct: 44710 DSEKELKKKADYQREVEEFKKQEDEIRK 44627


>gb|AACB02000003.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_3, whole genome shotgun
              sequence
          Length = 483138

 Score = 24.6 bits (52), Expect = 5.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 55     VINILAIFFKTLLGQSN-TSQSSNGKNNDDDDGFF 88
              V N  ++  + LL +S+ T + +NG N  D+ GFF
Sbjct: 204597 VFNESSLTLEMLLSRSDRTRELNNGTNKPDEMGFF 204493


>gb|AACB02000039.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_39, whole genome shotgun
             sequence
          Length = 83218

 Score = 24.3 bits (51), Expect = 7.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 27    IRKRNALHNKFILPIINFIK 46
             + +RN L  + +LP+IN++K
Sbjct: 36349 VLRRNLLAGRHLLPLINYLK 36408


>gb|AACB02000019.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_19, whole genome shotgun
              sequence
          Length = 201565

 Score = 24.3 bits (51), Expect = 7.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 62     FFKTLLGQSNTSQSSNGKNND 82
              +FK    Q +   S NGKNND
Sbjct: 165053 YFKVSKNQVSDETSENGKNND 165115


>gb|AACB02000001.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_1, whole genome shotgun
              sequence
          Length = 870956

 Score = 24.3 bits (51), Expect = 7.4
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = -1

Query: 25     EKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFFKTLLGQSNTSQSSNGKNNDDD 84
              + I  +  L + FIL I  F+K +     +V + L + ++TL   + T +  N +   D 
Sbjct: 703031 QSIAFQQRLKDLFILLITAFLKDVAIVYNSVTDELHLTYRTL---TETDEDQNFEGKQDQ 702861

Query: 85     DGFFKKKRTGGL 96
               G    +  G +
Sbjct: 702860 YGLLFLQNYGSV 702825


>gb|AACB02000017.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_17, whole genome shotgun
             sequence
          Length = 203025

 Score = 23.9 bits (50), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 39    LPIINFIKGIINFIKTVINIL 59
             LP++NF+ G I F+ T    L
Sbjct: 54519 LPVVNFLMGYIIFLTTFYTFL 54581


>gb|AACB02000012.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_12, whole genome shotgun
             sequence
          Length = 268442

 Score = 23.9 bits (50), Expect = 9.7
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 27    IRKRNALHNKFILPIINFIKGII-NFIKTVINILAIFFKT 65
             ++K+N  +N + +P+ ++I GII  +I+T     ++  KT
Sbjct: 33637 LQKKNPTYNCYEVPLDHYIMGIIKGYIETAAVGPSVVMKT 33756


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:05 PM
  Number of letters in database: 11,192,215
  Number of sequences in database:  306
  
Lambda     K      H
   0.320    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,021,475
Number of Sequences: 306
Number of extensions: 9613
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 18
length of query: 116
length of database: 3,730,738
effective HSP length: 80
effective length of query: 36
effective length of database: 3,706,258
effective search space: 133425288
effective search space used: 133425288
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)