TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: genome.fa 
           31,653 sequences; 18,560,894 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

terra182d02.q1k                                                        31   0.069
terra265a02.p1k                                                        27   1.7  
terra282h07.p1k                                                        26   2.9  
terra257b12.p1k                                                        26   2.9  
terra250f10.p1k                                                        26   2.9  
terra133f02.p1k                                                        26   2.9  
terra314b07.p1k                                                        25   3.8  
terra249e09.q1k                                                        25   4.9  
terra299h10.p1k                                                        25   6.4  
terra169c06.q1k                                                        25   6.4  
terra328a06.p1k                                                        24   8.4  
terra271e11.q1k                                                        24   8.4  

>terra182d02.q1k 
          Length = 756

 Score = 31.2 bits (69), Expect = 0.069
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
 Frame = -2

Query: 5   KENKKNADYEIFLRDRKLKYEKIRKRN-----ALHNKFILPII--------NFIKGIINF 51
           +E + N + +I      L+ E + +++     AL   ++ PI+        NF+KGII  
Sbjct: 755 EEREMNEEDDIIYTQILLELESVEQQHMLNXTALKEVYLDPILKASNKEHANFVKGIITH 576

Query: 52  IKTVINILAIFFKTLL 67
           + T+IN+   F  T L
Sbjct: 575 VDTMINVHQNFLTTFL 528


>terra265a02.p1k 
          Length = 717

 Score = 26.6 bits (57), Expect = 1.7
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 12  DYEIFLRDRKLK-YEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAIFF 63
           D+  F R  K +  EKI K     N  ILP+ + I   +N I  +I   A FF
Sbjct: 461 DFFFFFRQ*KTQ*LEKINKSKKNRND*ILPVNSQIAAKMNQINELITTFAPFF 619


>terra282h07.p1k 
          Length = 532

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 34  HNKFILPIINFIKGIINFIKTVINILAI 61
           HN++I+ I++ + GIIN I  ++  L++
Sbjct: 205 HNRYIVSILSLVFGIINVIFGLLLFLSL 122


>terra257b12.p1k 
          Length = 739

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 34  HNKFILPIINFIKGIINFIKTVINILAI 61
           HN++I+ I++ + GIIN I  ++  L++
Sbjct: 584 HNRYIVSILSLVFGIINVIFGLLLFLSL 501


>terra250f10.p1k 
          Length = 795

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 34 HNKFILPIINFIKGIINFIKTVINIL 59
          +N + + IIN I  IIN I T+INI+
Sbjct: 99 YN*YNITIINII*TIINII*TIINII 22


>terra133f02.p1k 
          Length = 715

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 34  HNKFILPIINFIKGIINFIKTVINILAI 61
           HN++I+ I++ + GIIN I  ++  L++
Sbjct: 568 HNRYIVSILSLVFGIINVIFGLLLFLSL 485


>terra314b07.p1k 
          Length = 450

 Score = 25.4 bits (54), Expect = 3.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 16  FLRDRKLKYEKIRKRNALHNKFIL 39
           + RDR+ +++K    + +HN+F+L
Sbjct: 155 YRRDRRHRHDKSHSHSYIHNRFLL 226


>terra249e09.q1k 
          Length = 757

 Score = 25.0 bits (53), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 27  IRKRNALHNKFILPIINFIKGIIN 50
           I+ +N + NKF L I+N  K  IN
Sbjct: 96  IKSKNQVSNKFYLTIVNE*KSFIN 167


>terra299h10.p1k 
          Length = 398

 Score = 24.6 bits (52), Expect = 6.4
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = -3

Query: 66  LLGQSNTSQSSNGKNNDDDDGFFK---KKRTGGLPK---SRIMELKNLGT 109
           L+    + +++N  NND++DG  K   KK++  L K     IM L+N  T
Sbjct: 309 LIDSIESVKNNNNNNNDNNDGSNKDNDKKKSD*LMK*INDEIMTLRNYET 160


>terra169c06.q1k 
          Length = 797

 Score = 24.6 bits (52), Expect = 6.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 19  DRKLKYEKIRKRNALHNKFILPIINFIKGIINFIKTVINILAI 61
           D KL+Y    + N+L+   I+P +  I   I FI   I I+ +
Sbjct: 454 DCKLRYFSTSQMNSLYRVSIMPYLVIIYHQIVFIAVFIKIVDV 582


>terra328a06.p1k 
          Length = 590

 Score = 24.3 bits (51), Expect = 8.4
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
 Frame = +3

Query: 2   DDRKENKKNADYEIFLRDRKLKYEKIR---------KRNALHNKF 37
           +D K NKKN D E   +    KYEK           KRN   N F
Sbjct: 222 NDFKRNKKNNDSEWNKKQNNDKYEKNNRDIKSN*GFKRNKKKNNF 356


>terra271e11.q1k 
          Length = 728

 Score = 24.3 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 21  KLKYEKIRKRNALHNKFILPIINFIKG 47
           K+K + IRK + L N  +  I++ +KG
Sbjct: 553 KIKRDNIRKESGLGNSILNLILSLLKG 633


  Database: genome.fa
    Posted date:  Feb 1, 2010  4:17 PM
  Number of letters in database: 18,560,894
  Number of sequences in database:  31,653
  
Lambda     K      H
   0.320    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,373,009
Number of Sequences: 31653
Number of extensions: 31149
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of query: 116
length of database: 6,186,964
effective HSP length: 76
effective length of query: 40
effective length of database: 3,781,336
effective search space: 151253440
effective search space used: 151253440
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)