TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: genome.fa 
           13 sequences; 8,173,701 total letters

Searching.............done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXT01000004.1| Babesia bovis strain T2Bo chromosome 4 gconti...    26   1.5  
gb|AAXT01000003.1| Babesia bovis strain T2Bo chromosome 2 gconti...    25   3.4  
gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3 gconti...    25   4.4  

>gb|AAXT01000004.1| Babesia bovis strain T2Bo chromosome 4 gcontig_1104837696380, whole
              genome shotgun sequence
          Length = 827912

 Score = 26.2 bits (56), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 39     LPIINFIKGIINFIKT--VINILAIFFKTLL 67
              LP ++ IKG I+FIKT  V N + +F   L+
Sbjct: 321384 LPRVSLIKGTISFIKTPSVWNGIGLFISRLI 321292


>gb|AAXT01000003.1| Babesia bovis strain T2Bo chromosome 2 gcontig_1104837696614, whole
              genome shotgun sequence
          Length = 1729419

 Score = 25.0 bits (53), Expect = 3.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 10     NADYEIFLRDRKLKYEKIRKRNALHNKFILPIINFIKGIINFI 52
              + D  + +RD  L YE++R R A +  + + I   I+ IIN +
Sbjct: 825576 DCDNSVVIRD--LLYEQMRPRAASNRYYNVQIFIHIRSIINLL 825454


>gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3 gcontig_1104837696278, whole genome
               shotgun sequence
          Length = 2593320

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 65      TLLGQSNTSQSSNGKNNDDDDGF 87
               TL   S  S +SNGKN   DDG+
Sbjct: 2485314 TLADLSALSIASNGKNPSRDDGY 2485382


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:04 PM
  Number of letters in database: 8,173,701
  Number of sequences in database:  13
  
Lambda     K      H
   0.320    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 803,581
Number of Sequences: 13
Number of extensions: 8667
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 9
length of query: 116
length of database: 2,724,567
effective HSP length: 78
effective length of query: 38
effective length of database: 2,723,553
effective search space: 103495014
effective search space used: 103495014
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)