Command line: [exonerate -m p2g --showtargetgff -q selr3.huma -t AANW02001203.1]
Hostname: [XAVI1]

C4 Alignment:
------------
         Query: SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3 (SelR3) # Homo sapiens # Complete
        Target: gi|145686515|gb|AANW02001203.1| Entamoeba invadens IP1 gcontig_1105074713651, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 318
   Query range: 45 -> 170
  Target range: 624 -> 1002

   46 : SerGlnGlnGluLeuArgLysArgLeuThrProLeuGlnTyrHisValThrGlnGluLysGl :   66
        ..!:!!...! !|||!:!!..!:!||||||||||||||||||!!.||||||||||||!..||
        GluLysSerAlaLeuLysSerLysLeuThrProLeuGlnTyrGlnValThrGlnGluSerGl
  625 : GAGAAGAGTGCGTTGAAGAGTAAGTTGACACCTCTACAATATCAGGTGACGCAAGAAAGTGG :  685

   67 : yThrGluSerAlaPheGluGlyGluTyrThrHisHisLysAspProGlyIleTyrLysCysV :   87
        ||||||| !! !!|||   ..!||||||  !|||  !   !!:  !|||||||||     !|
        yThrGluProProPheThrAsnGluTyrAspHisThrPheGluAspGlyIleTyrValAspV
  686 : AACGGAGCCTCCATTTACTAACGAGTATGACCATACCTTTGAAGACGGGATATACGTCGACG :  748

   88 : alValCysGlyThrProLeuPheLysSerGluThrLysPheAspSerGlySerGlyTrpPro :  107
        |||||   |||! !|||||||||..!|||:!!  !|||||||||||||||!!!|||||||||
        alValThrGlyLysProLeuPheSerSerLysAspLysPheAspSerGlyCysGlyTrpPro
  749 : TCGTGACGGGGAAACCCCTCTTCTCGTCGAAAGACAAATTCGACTCGGGATGTGGGTGGCCT :  808

  108 : SerPheHisAspValIleAsnSerGluAlaIleThrPheThrAspAspPheSerTyrGlyMe :  128
        :!!|||  ! !   !|||:!! !!   :!!:!!  !   ! !   |||   |||:!!|||||
        AlaPheThrLysProIleHisProLeuSerLeuTyrGluLysThrAspGluSerHisGlyMe
  809 : GCTTTCACTAAGCCTATCCACCCTCTTTCACTCTATGAGAAGACGGATGAGTCACATGGGAT :  871

  129 : tHisArgValGluThrSerCysSerGlnCysGlyAlaHisLeuGlyHisIlePheAspAspG :  149
        |!.!|||||||||..!!!! !!|||... !!! !:!!||||||||||||:!!|||!!:||||
        tArgArgValGluValArgSerSerSerGlyAspSerHisLeuGlyHisValPheGluAspG
  872 : GCGTCGAGTCGAAGTGAGAAGTTCGAGTGGTGACTCTCATCTCGGCCATGTCTTTGAAGATG :  934

  150 : lyPro<->ArgProThrGlyLysArgTyr  Cys  IleAsnSerAlaAlaLeuSerPheThrPro :  168
        |||||   ..!  !  !|||  !||||||  |||  ||||||||||||::!|||!!!|||! !|||
        lyProLeuGluMetGlyGlyLeuArgTyr  Cys  IleAsnSerAlaSerLeuArgPheIlePro
  935 : GGCCACTAGAAATGGGTGGACTAAGGTAT  TGC  ATTAACTCGGCAAGCTTAAGATTCATTCCT :  994

  169 : AlaAsp :  170
          !|||
        LysAsp
  995 : AAAGAC : 1002

vulgar: SPP00000023_1.0 45 170 . gi|145686515|gb|AANW02001203.1| 624 1002 + 318 M 105 315 G 0 3 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.0.0
##date 2009-03-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|145686515|gb|AANW02001203.1|	exonerate:protein2genome:local	gene	625	1002	318	+	.	gene_id 1 ; sequence SPP00000023_1.0 ; gene_orientation .
gi|145686515|gb|AANW02001203.1|	exonerate:protein2genome:local	cds	625	1002	.	+	.	
gi|145686515|gb|AANW02001203.1|	exonerate:protein2genome:local	exon	625	1002	.	+	.	insertions 3 ; deletions 0
gi|145686515|gb|AANW02001203.1|	exonerate:protein2genome:local	similarity	625	1002	318	+	.	alignment_id 1 ; Query SPP00000023_1.0 ; Align 625 46 315 ; Align 943 151 60
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis