TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000038_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Homo sapiens # Complete
         (596 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...   331   1e-90
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...   102   7e-22
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    90   6e-18
LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    88   2e-17
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    53   8e-07
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    52   1e-06
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    50   6e-06
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    46   7e-05
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    44   3e-04
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    42   0.002
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    41   0.002
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    37   0.054
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    33   0.46 
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    33   0.67 
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    32   1.6  
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    30   4.8  
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    30   6.3  

>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score =  331 bits (848), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 240/693 (34%), Positives = 354/693 (51%), Gaps = 104/693 (15%)
 Frame = +1

Query: 6       VNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLR 65
               +NVN+G+LGH+DSGKTALA+ALS+TASTAAFDK PQS+ RGITLDLGFS   V +     
Sbjct: 1301254 LNVNIGLLGHVDSGKTALAKALSSTASTAAFDKSPQSQSRGITLDLGFSACEVSVEDGNE 1301433

Query: 66      SSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQT 125
                +    +AA   +       +Q TLVDCPGHASLIRT++GGAQIID M+LV+D TKG+Q 
Sbjct: 1301434 DATQVLRAAELTK-------VQCTLVDCPGHASLIRTVVGGAQIIDAMVLVVDATKGIQV 1301592

Query: 126     QSAECLVIGQIACQKLVVVLNKIDLL----PEGKRQAAIDKMTKKMQKTLENTKFRGAPI 181
               Q+AECLV+G++  + LVVVLNKID +    P GK +AA+  + +K+Q+    T++    I
Sbjct: 1301593 QTAECLVLGEVLAKPLVVVLNKIDAIQGVSPAGK-EAALAALKRKLQQVFRRTRWPTVAI 1301769

Query: 182     IPVAAKP-------GGPEAPETEAPQGIP--ELIELLTSQISIPTRDPSGPFLMSVDHCF 232
               + VAA P       G P   E   PQ +   +L  L +++ S   R     F M VDHCF
Sbjct: 1301770 VEVAAAPREVAGGIGHPVNTEAVLPQVLRAVDLAALKSAKESEAER--PAQFYMLVDHCF 1301943

Query: 233     SIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQ 292
               +++GQGTV TGT+++G + +GD+V +P L+  +KVK +Q FH P+  A  GDR+G+CV Q
Sbjct: 1301944 AVRGQGTVFTGTVVAGVVRVGDTVLVPELQTTRKVKGLQAFHKPVELAQGGDRVGLCVAQ 1302123

Query: 293     FDPKLLERGLVCAPES----LHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRL 348
               FDP  +ERG+VC+  S    L +    +  V ++ Y   P  T  +FHIT+GH TVMG +
Sbjct: 1302124 FDPTWMERGVVCSAASSGRTLVSSSQLIARVHRVRYHPLPCDTHTRFHITIGHATVMGTM 1302303

Query: 349     MFFSPAP---DNFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGH 405
                +F+  P   ++ D    + +F+ S E  + E+ L   +    T  D      G+     
Sbjct: 1302304 RYFARLPHANESLDVPGTVAAFDPSIESAYVEE-LDDGVVARYTSTDTTAGVPGRPLP-V 1302477

Query: 406     CPRQQ--WALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAFHGILLH----------- 452
                P +Q  +A++  E+PV       +I  RLD +   N CR+A  G + H           
Sbjct: 1302478 APAEQDYYAVLLLERPVLAAPGLSLIAMRLDVE-RENFCRIALAGTVCHVFMEDGAAART 1302654

Query: 453     -----GLEDRNYADSFLP---RLKVYKLKHKHGLVERAMDDYSVIGRSLFKKET------ 498
                    G  D++ +   +P   RL V + +++   V+R +D  S I   +   +T      
Sbjct: 1302655 ATAVPGSSDQSASHGQVPAWRRLPVVRYRYRVLRVDRVLDSRSCIADGVVSLQTAGAGGS 1302834

Query: 499     ------------------------------NIQLFVGLKVHLSTGEL------------- 515
                                              +Q F+ L V     +              
Sbjct: 1302835 GNRPAGASAGARRDKGCVNVEARQRAELFAEVQKFLRLVVVFEPEDADAAVTTPQASNPD 1303014

Query: 516     ---GIIDSAFGQSGKFKIHIPGGL--SPESKKILTP--ALKKRARAGRGEATRQEESAER 568
                  GIIDS+FG++GK K+   G +   P +     P  +    AR  R ++T+  +SA+ 
Sbjct: 1303015 AVKGIIDSSFGKTGKVKLVFDGPVFADPAANADTAPIGSFMSAARKKRSKSTKGPDSADA 1303194

Query: 569     S-------EPSQHVVLSLTFKRYVFDTHKRMVQ 594
                        P +   + L  K+Y F  H  + Q
Sbjct: 1303195 GCSGSVFRRPGR---ILLILKKYPFALHSGLEQ 1303284



 Score = 38.1 bits (87), Expect = 0.019,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 8/216 (3%)
 Frame = +1

Query: 9      NVGVLGHIDSGKTALARA-------LSTTASTAAF-DKQPQSRERGITLDLGFSCFSVPL 60
              NV V+ H+D GKT L+ A       L    +T  F D+    +ERGIT+    +C SV L
Sbjct: 243328 NVSVVAHVDHGKTTLSDAMLRFSNLLPADGATGTFTDRLKVEKERGITIK-AQTC-SVLL 243501

Query: 61     PARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVT 120
                R                E G   L V L+D PGH      +       +   L++DV 
Sbjct: 243502 TVR----------------ETGTQYL-VNLIDTPGHVDFQYEVSRSLCASEGAALLVDVR 243630

Query: 121    KGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAP 180
              +G++ Q+             ++ VL K+D +      A ++K   +++   ++T      
Sbjct: 243631 QGVEAQTMAQFYAALEQNLTILPVLTKMDNV---MSDAEVEKTLLQLE---DSTGLLSRE 243792

Query: 181    IIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIP 216
              +I  +AK          + QGI +L + +  ++  P
Sbjct: 243793 VILTSAK----------SKQGIEQLFQQIIDKVPPP 243870


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score =  102 bits (255), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 104/440 (23%), Positives = 187/440 (42%), Gaps = 27/440 (6%)
 Frame = +1

Query: 10     VGVLGHIDSGKTALARALSTTASTA---------AFDKQPQSRERGITLDLGFSCFSVPL 60
              +G +GH+D GKT L  A++T  +           A DK P+ + R IT++          
Sbjct: 314722 IGTIGHVDHGKTTLTSAITTVLAKRGQAQALDYFAIDKSPEEKSRKITIN---------- 314871

Query: 61     PARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVT 120
                   ++  E+++                 +DCPGH   ++ +I GA  +D  ++V+  T
Sbjct: 314872 -----ATHVEYESEKR----------HYGHIDCPGHMDFVKNMITGAAQMDGGIIVVAAT 315006

Query: 121    KGMQTQSAECLVI-GQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRG- 178
               G+  Q+ E L+I  QI    LV  +NK+D+  E       D +  ++++ LE  KF   
Sbjct: 315007 DGVMPQTREHLLICSQIGLPALVGFINKVDMTDED----TCDLVDMEVREQLEKYKFPAE 315174

Query: 179    -APIIPVAAKPGGPEAPETEAP--QGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSI- 234
                PI+  +A     +A E +A   + I EL+      I  P R+   PFLM+++H + I 
Sbjct: 315175 ETPIVRGSAL----KAVEGDAKYEENILELVRKCDEWIPDPPRNTDKPFLMAIEHVYEIG 315342

Query: 235    -KGQGTVMTGTILSGSISLGDSVEIPALKVVK---KVKSMQMFHMPITSAMQGDRLGICV 290
                 +  ++TG +  G + L    E+      K   +V  ++M+H  ++  M GD +G+ +
Sbjct: 315343 KDKKSVIVTGRVDQGVLKLNTDAELAGFSAKKSTVRVTGIEMYHKTLSECMPGDSVGVSI 315522

Query: 291    ------TQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETV 344
                    T      +ERG+V A      ++                + KA+ ++    E  
Sbjct: 315523 VGTGDTTSLSKDNVERGMVMAATGSTNLYN---------------KVKAQVYVLTKDEG- 315654

Query: 345    MGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLT--PAVTDNDEADKKAGQAT 402
               GR   FSP              ++  +  F    ++ D++   A    +E +KK G+  
Sbjct: 315655 -GRHTGFSP--------------HYRPQLFFHCADVTADMSFPEAEKHREELNKKFGRGP 315789

Query: 403    EGHCPRQQWALVEFEKPVTC 422
              E    +++  + EFE  + C
Sbjct: 315790 EED-KKKEAEMKEFESKLVC 315846


>LmjF17_01_20050601_V5.2
             [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 89.7 bits (221), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 136/341 (39%), Gaps = 36/341 (10%)
 Frame = -2

Query: 1     MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------F 36
             M   +V++N+ V+GH+D+GK+               R +      AA             
Sbjct: 30002 MGKDKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVL 29823

Query: 37    DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
             DK    RERGIT+D+    F  P                             T++D PGH
Sbjct: 29822 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 29718

Query: 97    ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
                I+ +I G    D  +L+ID T G          Q+ E  L+   +  +++VV  NK+
Sbjct: 29717 RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 29538

Query: 149   DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPGGP--EAPETEAPQGIPE 204
             D       Q+  D+++K++   L+   +    +  IP++   G    E  +       P 
Sbjct: 29537 DDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPT 29358

Query: 205   LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264
             L++ L   +  P R    P  + +   + I G GTV  G + +G +  GD V      V 
Sbjct: 29357 LLDAL-DMLEPPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT 29181

Query: 265   KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
              +VKS++M H  +  A  GD +G  V     K + RG VC 
Sbjct: 29180 TEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVCG 29058



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 136/341 (39%), Gaps = 36/341 (10%)
 Frame = -3

Query: 1     MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------F 36
             M   +V++N+ V+GH+D+GK+               R +      AA             
Sbjct: 43216 MGKDKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVL 43037

Query: 37    DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
             DK    RERGIT+D+    F  P                             T++D PGH
Sbjct: 43036 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 42932

Query: 97    ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
                I+ +I G    D  +L+ID T G          Q+ E  L+   +  +++VV  NK+
Sbjct: 42931 RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 42752

Query: 149   DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPGGP--EAPETEAPQGIPE 204
             D       Q+  D+++K++   L+   +    +  IP++   G    E  +       P 
Sbjct: 42751 DDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPT 42572

Query: 205   LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264
             L++ L   +  P R    P  + +   + I G GTV  G + +G +  GD V      V 
Sbjct: 42571 LLDAL-DMLEPPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT 42395

Query: 265   KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
              +VKS++M H  +  A  GD +G  V     K + RG VC 
Sbjct: 42394 TEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVCG 42272



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 136/341 (39%), Gaps = 36/341 (10%)
 Frame = -1

Query: 1     MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------F 36
             M   +V++N+ V+GH+D+GK+               R +      AA             
Sbjct: 41007 MGKDKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVL 40828

Query: 37    DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
             DK    RERGIT+D+    F  P                             T++D PGH
Sbjct: 40827 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 40723

Query: 97    ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
                I+ +I G    D  +L+ID T G          Q+ E  L+   +  +++VV  NK+
Sbjct: 40722 RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 40543

Query: 149   DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPGGP--EAPETEAPQGIPE 204
             D       Q+  D+++K++   L+   +    +  IP++   G    E  +       P 
Sbjct: 40542 DDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPT 40363

Query: 205   LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264
             L++ L   +  P R    P  + +   + I G GTV  G + +G +  GD V      V 
Sbjct: 40362 LLDAL-DMLEPPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT 40186

Query: 265   KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
              +VKS++M H  +  A  GD +G  V     K + RG VC 
Sbjct: 40185 TEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVCG 40063



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 136/341 (39%), Gaps = 36/341 (10%)
 Frame = -1

Query: 1     MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------F 36
             M   +V++N+ V+GH+D+GK+               R +      AA             
Sbjct: 36603 MGKDKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVL 36424

Query: 37    DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
             DK    RERGIT+D+    F  P                             T++D PGH
Sbjct: 36423 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 36319

Query: 97    ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
                I+ +I G    D  +L+ID T G          Q+ E  L+   +  +++VV  NK+
Sbjct: 36318 RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 36139

Query: 149   DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPGGP--EAPETEAPQGIPE 204
             D       Q+  D+++K++   L+   +    +  IP++   G    E  +       P 
Sbjct: 36138 DDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPT 35959

Query: 205   LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264
             L++ L   +  P R    P  + +   + I G GTV  G + +G +  GD V      V 
Sbjct: 35958 LLDAL-DMLEPPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT 35782

Query: 265   KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
              +VKS++M H  +  A  GD +G  V     K + RG VC 
Sbjct: 35781 TEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVCG 35659



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 136/341 (39%), Gaps = 36/341 (10%)
 Frame = -1

Query: 1     MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------F 36
             M   +V++N+ V+GH+D+GK+               R +      AA             
Sbjct: 38799 MGKDKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVL 38620

Query: 37    DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
             DK    RERGIT+D+    F  P                             T++D PGH
Sbjct: 38619 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 38515

Query: 97    ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
                I+ +I G    D  +L+ID T G          Q+ E  L+   +  +++VV  NK+
Sbjct: 38514 RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 38335

Query: 149   DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPGGP--EAPETEAPQGIPE 204
             D       Q+  D+++K++   L+   +    +  IP++   G    E  +       P 
Sbjct: 38334 DDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPT 38155

Query: 205   LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264
             L++ L   +  P R    P  + +   + I G GTV  G + +G +  GD V      V 
Sbjct: 38154 LLDAL-DMLEPPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT 37978

Query: 265   KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
              +VKS++M H  +  A  GD +G  V     K + RG VC 
Sbjct: 37977 TEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVCG 37855



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 136/341 (39%), Gaps = 36/341 (10%)
 Frame = -2

Query: 1     MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------F 36
             M   +V++N+ V+GH+D+GK+               R +      AA             
Sbjct: 32198 MGKDKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVL 32019

Query: 37    DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
             DK    RERGIT+D+    F  P                             T++D PGH
Sbjct: 32018 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 31914

Query: 97    ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
                I+ +I G    D  +L+ID T G          Q+ E  L+   +  +++VV  NK+
Sbjct: 31913 RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 31734

Query: 149   DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPGGP--EAPETEAPQGIPE 204
             D       Q+  D+++K++   L+   +    +  IP++   G    E  +       P 
Sbjct: 31733 DDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPT 31554

Query: 205   LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264
             L++ L   +  P R    P  + +   + I G GTV  G + +G +  GD V      V 
Sbjct: 31553 LLDAL-DMLEPPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT 31377

Query: 265   KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
              +VKS++M H  +  A  GD +G  V     K + RG VC 
Sbjct: 31376 TEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVCG 31254



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 136/341 (39%), Gaps = 36/341 (10%)
 Frame = -1

Query: 1     MAGRRVNVNVGVLGHIDSGKTALA------------RALSTTASTAA------------F 36
             M   +V++N+ V+GH+D+GK+               R +      AA             
Sbjct: 34407 MGKDKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVL 34228

Query: 37    DKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGH 96
             DK    RERGIT+D+    F  P                             T++D PGH
Sbjct: 34227 DKLKAERERGITIDIALWKFESPKSV-------------------------FTIIDAPGH 34123

Query: 97    ASLIRTIIGGAQIIDLMMLVIDVTKG-------MQTQSAE-CLVIGQIACQKLVVVLNKI 148
                I+ +I G    D  +L+ID T G          Q+ E  L+   +  +++VV  NK+
Sbjct: 34122 RDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKM 33943

Query: 149   DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVAAKPGGP--EAPETEAPQGIPE 204
             D       Q+  D+++K++   L+   +    +  IP++   G    E  +       P 
Sbjct: 33942 DDKTVTYAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPT 33763

Query: 205   LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264
             L++ L   +  P R    P  + +   + I G GTV  G + +G +  GD V      V 
Sbjct: 33762 LLDAL-GMLEPPVRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVT 33586

Query: 265   KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305
              +VKS++M H  +  A  GD +G  V     K + RG VC 
Sbjct: 33585 TEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVCG 33463


>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 125/275 (45%), Gaps = 20/275 (7%)
 Frame = -1

Query: 4      RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFS------CFS 57
              R+  +NVG +GH+  GK+ + +ALS    T  F ++       IT+ LG++      C +
Sbjct: 436908 RQATINVGTIGHVAHGKSTVVKALSGV-KTQKFHREAV---MNITIHLGYANAKVYQCET 436741

Query: 58     VPLPARLRSSLPEFQAAPEAEPEPGEPLL---QVTLVDCPGHASLIRTIIGGAQIIDLMM 114
               P P     + P  Q      P  GE +      + VDCPGH  L+ T++ GA I+D  +
Sbjct: 436740 CPRPT-CYQTYPSSQPDSTPCPNCGETMTLKRHFSFVDCPGHDVLMATMLNGAAIMDAAL 436564

Query: 115    LVIDVTKGM-QTQSAECLVIGQI-ACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLE 172
              L+I   +   Q Q+ E L   +I   + LVV+ NKIDL+ E K         + ++  L+
Sbjct: 436563 LLIAANESFPQPQTLEHLKAVEIMKLRHLVVLQNKIDLVGEVKAH----DQYRHVRAYLD 436396

Query: 173    NTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCF 232
              N      PI+P++A          +  + +  L+E L   I +P R    P  M+V   F
Sbjct: 436395 NIAL-NVPIVPISA----------QLKRNVDYLLEYLL-HIPMPVRQLKAPVRMTVVRSF 436252

Query: 233    SIKG---------QGTVMTGTILSGSISLGDSVEI 258
               I           +G V  GT+  G I +G  VEI
Sbjct: 436251 DINKPGEGDIESLKGGVAGGTVTQGVIKVGQVVEI 436147



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 134/286 (46%), Gaps = 23/286 (8%)
 Frame = -3

Query: 4      RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFS------CFS 57
              R+  +NVG +GH+  GK+ + +ALS    T  F ++       IT+ LG++      C +
Sbjct: 439717 RQATINVGTIGHVAHGKSTVVKALSGV-KTQKFHREAV---MNITIHLGYANAKVYQCET 439550

Query: 58     VPLPARLRSSLPEFQAAPEAEPEPGEPLL---QVTLVDCPGHASLIRTIIGGAQIIDLMM 114
               P P     + P  Q      P  GE +      + VDCPGH  L+ T++ GA I+D  +
Sbjct: 439549 CPRPT-CYQTYPSSQPDSTPCPNCGETMTLKRHFSFVDCPGHDVLMATMLNGAAIMDAAL 439373

Query: 115    LVIDVTKGM-QTQSAECLVIGQ-IACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLE 172
              L+I   +   Q Q+ E L   + I    L+V+ NK+DL+ + +R AA   +      T  
Sbjct: 439372 LLIAANESFPQPQTLEHLAAAEMIGVLSLIVLQNKVDLVSK-ERAAAQYSIIHHYLAT-- 439202

Query: 173    NTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCF 232
               T +  AP+IP+ A+              I  L++ L   I +P R       M+V   F
Sbjct: 439201 KTAYAKAPVIPICAQQHA----------NISFLLDYLV-HIPLPRRQLHHAQYMNVLRSF 439055

Query: 233    --SIKG---------QGTVMTGTILSGSISLGDSVE-IPALKVVKK 266
                S+ G         +G V+ GT+ +G + +GD +E IP L V+++
Sbjct: 439054 DVSLPGPAGDGAKALKGGVIGGTVAAGVLCVGDEIEIIPGLLVLRR 438917


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 64/151 (42%)
 Frame = +2

Query: 4      RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPAR 63
              RR+ V   V+GH++ GKTAL  AL  +   A          R  T+              
Sbjct: 475226 RRIPV-FAVMGHVNHGKTALLDALQGSRIGAEEPHHITQSVRAFTM-------------- 475360

Query: 64     LRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM 123
                             P PG      T +D PGH   + T      + D++ LVI V +G+
Sbjct: 475361 ---------------PRPGADNDLFTFIDTPGHRIFVETRFHVQLMADVIALVISVAEGI 475495

Query: 124    QTQSAECLVIGQIACQKLVVVLNKIDLLPEG 154
              ++Q+ E + +     + ++VVLNK+DLL + 
Sbjct: 475496 ESQTHETIKVALNVDKPVIVVLNKLDLLSDA 475588



 Score = 32.0 bits (71), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 19    GKTALARALSTTASTAAFDKQ---PQSRERGITLDLGFSCFSVPLPARLRSSLP 69
             GK  L R LSTT S+AAF  Q   PQ+++RG         F  P+  R  S +P
Sbjct: 32136 GKVHLWR-LSTTPSSAAFADQPPPPQTKKRGFFFSQKSCVFVSPIAPRSNSLVP 32294


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
 Frame = +3

Query: 12      VLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEF 71
               VLGH+D+GKT+L   + +T               GIT  +G + F        R SL   
Sbjct: 1235199 VLGHVDTGKTSLLDRIRSTNVQGG-------EAGGITQQIGATFFP-------RESLVSA 1235336

Query: 72      QAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECL 131
                A    + +    +  + ++D PGH S       G+ + D+ +LV+D+  G++ Q+ E +
Sbjct: 1235337 TAELIKKHKCNLNVPGLLVIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTRESI 1235516

Query: 132     VIGQIACQKLVVVLNKIDLLPEGKRQAAID-KMTKKMQKTLENTKF 176
                + +      +V LNK+D L + +    +D + + ++QK    ++F
Sbjct: 1235517 RLLREKRCPFIVALNKVDRLFDWQPHENMDIQQSLELQKAHVRSEF 1235654


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 112/289 (38%), Gaps = 15/289 (5%)
 Frame = +2

Query: 36      FDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPG 95
                D+  + R RG+T+D G  CF                   E E        +V ++D PG
Sbjct: 1656572 LDQCEEERRRGVTIDSGSFCF-------------------ETEHR------RVHILDAPG 1656676

Query: 96      HASLIRTIIGGAQIIDLMMLVIDVTKG------MQTQSAECLVIGQIACQKLVVVLNKID 149
               H   +  +I  A   D  +LV+  T             +  LV+  +    +VV +NK+D
Sbjct: 1656677 HKDFVLNMISSATQADAALLVVTATNSEFETGLHHGTKSHLLVLKTLGVGSIVVAVNKMD 1656856

Query: 150     LLPEGKRQAAIDKMTKKMQKTLENTKFRGAPII---PVAAKPG----GPEAPETEAPQGI 202
                +     Q   D + +++Q  L+ T+     II   P++   G       A ET     +
Sbjct: 1656857 AV--AYSQERYDYVVRELQLLLKQTRIPEEAIIGFCPISGMTGVNITQRGAKETPWYHDL 1657030

Query: 203     PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK 262
                 LIE++  +  + +R  + P  +S+        QGT +   + SG +  GD V     +
Sbjct: 1657031 -SLIEMI-DRCPLESRLVNSPLRLSLQDV-----QGTTLYAKVESGRLFTGDMVHFVPSE 1657189

Query: 263     VVKKVKSMQ--MFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESL 309
               V   +KS+Q      P+  A  G+ + I        L    + C P  L
Sbjct: 1657190 VRVTIKSIQKPTVAGPVLVAFAGETVEISTNSSVTGLYPGCVGCEPNLL 1657336


>LmjF25_01_20050601_V5.2
             [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 104/260 (40%), Gaps = 10/260 (3%)
 Frame = -3

Query: 9     NVGVLGHIDSGKTALARALSTTASTAA------FDKQPQSRERGITLDLGFSCFSVPLPA 62
             N+ V+ H+D GKT L  ++ + + T A       D + Q RERGIT+    +   +    
Sbjct: 42661 NIAVIAHVDHGKTTLVDSMLSQSGTVANAHNRVMDSKDQERERGITILAKNTAILLDNGK 42482

Query: 63    RLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG 122
             R                       ++ +VD PGH      +    Q+++ ++L++D  +G
Sbjct: 42481 R-----------------------RINIVDTPGHLDFSGEVERALQMVEGIILLVDAKEG 42371

Query: 123   MQTQSAECLVIGQIACQKLVVVLNKIDL--LPEGKRQAAIDKMTKKMQKTLENTKFRGAP 180
             ++  +   L        + +V LNKID   L   K + A++ +     +  E+       
Sbjct: 42370 VRPGTRYVLRKALSLHLRPIVCLNKIDKDDLNIAKTEQAVEDL---FLEAAEDENQLDMK 42200

Query: 181   IIPVAAKPG-GPEAPETEAPQGIPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGT 239
              +  + + G   E P+ E    +  L + + S +  P  D      M V      +   T
Sbjct: 42199 FLYGSGRSGYMNEDPKKEGT--LTPLFDTIFSTVPAPKTDDDQALQMLVAQVDEDEKNNT 42026

Query: 240   VMT-GTILSGSISLGDSVEI 258
              +  G I +G++  GD V +
Sbjct: 42025 KLAIGRIYNGTVQTGDVVTV 41966


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 22/248 (8%)
 Frame = +3

Query: 87     QVTLVDCPGHASLIRTIIGGAQIIDLMMLVID---------VTKGMQTQSAECLVIGQIA 137
              +VT++D PGH + + ++IGGA   D+ +LVI            KG QT+    +++    
Sbjct: 481740 RVTVLDAPGHKAFVPSMIGGATQADICVLVISSRTGEFETGFEKGGQTRE-HAMLVRTCG 481916

Query: 138    CQKLVVVLNKIDLLPEGK-RQAAIDKMTKKM--QKTLENTKFRGAPIIPVAAKPG----- 189
               ++++ V+NK+D +   K R + I    K    Q   +  + +    +PVA   G     
Sbjct: 481917 VKQMICVINKMDEMKWSKERYSEIVGRLKPFLRQNGYDEERAKNLIFMPVAGLTGENLIK 482096

Query: 190    --GPEAPETEAPQGIPELIELLTSQISIP-TRDPSGPFLMSVDHCFSIKGQGTVMTGTIL 246
                 P   +    + + E+I+     + +P ++     F + +   +   G+ T + G + 
Sbjct: 482097 HVEPSHCDWYKGKTMMEVID----DLKLPESKTEDDVFCIPLVGAYKDDGK-THIYGKVE 482261

Query: 247    SGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA- 305
              SGSI++G+ +++   K    V+ + +          GD + + V   D   +  G V   
Sbjct: 482262 SGSIAVGERIQVLPTKAEALVEGISIESTEFEKCYPGDNVHLHVRGIDENDIHGGYVATS 482441

Query: 306    -PESLHTV 312
               P SL  V
Sbjct: 482442 IPTSLRAV 482465


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 41.6 bits (96), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 11/159 (6%)
 Frame = -3

Query: 2      AGRRVNVNVGVLGHIDSGKTALA-----------RALSTTASTAAFDKQPQSRERGITLD 50
              A RRV  N+G+  HID+GKT              R     + T   D   +  +RGIT+ 
Sbjct: 763055 AVRRVR-NIGIAAHIDAGKTTTTERMLFYAGVTKRVGDVDSGTTTTDFMKEEADRGITIQ 762879

Query: 51     LGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQII 110
                    S  +  R R                      + L+D PGH      +    +I+
Sbjct: 762878 ------SAAVSLRWRDH-------------------GINLIDTPGHVDFTVEVERTMRIV 762774

Query: 111    DLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149
              D ++ + D + G+Q QS   L   +     L+  LNK+D
Sbjct: 762773 DGVVALFDASAGVQAQSYTVLQQSRRFNAPLIAFLNKMD 762657


>LmjF36_01_20050601_V5.2
             [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 41.2 bits (95), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
 Frame = -3

Query: 9     NVGVLGHIDSGKTALARALSTTASTAAFDKQPQSR---------ERGITLDLGFSCFSVP 59
             N+ V+ H+D GK+ L+ +L   A     ++    R          RGIT+          
Sbjct: 60709 NMSVIAHVDHGKSTLSDSLVGAAGIIKMEEAGDKRIMDTRADEIARGITIKSTAISMHYH 60530

Query: 60    LPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV 119
             +P  +   L + +               + L+D PGH      +    ++ D  ++V+D 
Sbjct: 60529 VPKEMIGDLDDDKRD-----------FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 60383

Query: 120   TKGMQTQSAECLVIGQIACQKLVVVLNKID 149
              +G+  Q+   L        + VV +NK+D
Sbjct: 60382 VEGVCVQTETVLRQALTERIRPVVFINKVD 60293



 Score = 41.2 bits (95), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
 Frame = -2

Query: 9     NVGVLGHIDSGKTALARALSTTASTAAFDKQPQSR---------ERGITLDLGFSCFSVP 59
             N+ V+ H+D GK+ L+ +L   A     ++    R          RGIT+          
Sbjct: 57194 NMSVIAHVDHGKSTLSDSLVGAAGIIKMEEAGDKRIMDTRADEIARGITIKSTAISMHYH 57015

Query: 60    LPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDV 119
             +P  +   L + +               + L+D PGH      +    ++ D  ++V+D 
Sbjct: 57014 VPKEMIGDLDDDKRD-----------FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 56868

Query: 120   TKGMQTQSAECLVIGQIACQKLVVVLNKID 149
              +G+  Q+   L        + VV +NK+D
Sbjct: 56867 VEGVCVQTETVLRQALTERIRPVVFINKVD 56778



 Score = 36.6 bits (83), Expect = 0.052,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 14/133 (10%)
 Frame = +2

Query: 9      NVGVLGHIDSGKTALARAL--------------STTASTAAFDKQPQSRERGITLDLGFS 54
              N+G+  HIDSGKT L+  +                T   A  D     +ERGIT+     
Sbjct: 162734 NIGISAHIDSGKTTLSERILFYSGRIGKIHEVKGGTEVGATMDSMELEKERGITIR---- 162901

Query: 55     CFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMM 114
                S     R ++S                    + ++D PGH      +    +++D  +
Sbjct: 162902 --SAATQCRWKNS-------------------TINIIDTPGHVDFTIEVERALRVLDGAI 163018

Query: 115    LVIDVTKGMQTQS 127
              L++    G+Q+Q+
Sbjct: 163019 LLMCAVGGVQSQT 163057


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 36.6 bits (83), Expect = 0.054,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 1/144 (0%)
 Frame = -2

Query: 9      NVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSL 68
              NV V G +  GKT+L   L    S   + K+    +R +TL                  L
Sbjct: 858615 NVVVAGSLHHGKTSLVELLLHERS---YHKRQDEVDREMTLK--------------SHVL 858487

Query: 69     PEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSA 128
                     E +P       Q+T++D PGH  LI     G ++ D ++  +D  + +   S 
Sbjct: 858486 TIITGGAELQPTS----RQITVIDTPGHPDLIGETASGMRLADAVLFCVDAAESLSDHSE 858319

Query: 129    ECLVIGQIACQ-KLVVVLNKIDLL 151
                L    +  Q  +V+V+ K+D L
Sbjct: 858318 RLLRHAIVNEQLPIVLVITKVDRL 858247



 Score = 30.0 bits (66), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +2

Query: 152    PEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVAAKPGGPEAPETEAPQGIPELIELLTS 211
              P+ KR+        + Q   E    + AP+         P  P T  P+     + ++  
Sbjct: 216536 PKAKRRRCSQTSPNRSQAQREQRNAKRAPLAATPPSRDSPFHPMTATPEMAEYCLRVIAQ 216715

Query: 212    QISIPTRDPSGPF 224
              QIS P  DPS P 
Sbjct: 216716 QISAPD-DPSVPL 216751


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 33.5 bits (75), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 28     STTASTAAFDKQPQSRERGITLDLGFSCFSVPLPAR--LRSSLPEFQAAPEAEPEPG 82
              +TT ++AA+D  P   E   +     +C S PLP R   R++ P   + P   P PG
Sbjct: 467043 TTTCASAAYDGDPHPWEGSRSRSGTITCLSRPLPRRSWRRATCPTQLSHPPLAPSPG 467213


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 33.1 bits (74), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 22     ALARALSTTASTAAFDK-QPQSRERGITLDLGFSCFSVPLPAR 63
              AL+R+L++ AS  +F   +  SR RG T  L F C S+ LP+R
Sbjct: 651234 ALSRSLASGASAFSFPLLRSCSRARGFTRGLSFICRSLFLPSR 651362


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 32.0 bits (71), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 156    RQAAIDKMTKKMQKTLENTKFRGAPIIPVAA 186
              RQAA+ +M  ++++ L      GAPIIP A+
Sbjct: 245645 RQAAMAEMVARLRRMLSEANITGAPIIPAAS 245553


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 520    SAFGQSGKFKIHIPGGLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSL 579
              ++FG +       P G S  +KK L     + A+    +A  QEE    +EP ++V    
Sbjct: 201244 ASFGPTNSLDAESPEGSSEAAKKALVQRALREAQPCLAQAVTQEEVEAAAEPMRYVFEHC 201423

Query: 580    TFKRY 584
                 RY
Sbjct: 201424 DLSRY 201438


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 29.6 bits (65), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -2

Query: 24     ARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGE 83
              + A    A T +   QPQSR+R        +C    LP   R SLP  +++  A P   +
Sbjct: 263370 SHAAGRCAGTTSASSQPQSRQRDAPRS*--TCVREALPWH-RRSLPRTKSSARALPARSQ 263200

Query: 84     PLLQVTLVDC 93
              P  + + +DC
Sbjct: 263199 PRTRCSALDC 263170


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    76   2e-14
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    70   9e-13
LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...    32   0.39 

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 78/187 (41%)
 Frame = -2

Query: 15     SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVL 74
              S+Y F     +  +P  LG  +G  LLI NVAS  G T   Y     L  +    G +VL
Sbjct: 234658 SIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 75     GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 134
               FPCNQF  QE    EE+  S    R    F+  F + EK  VNG   HPL+ +L+    
Sbjct: 234481 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTCK 234317

Query: 135    APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 194
                    T L                V WNF  FLV  DG  + R++      +IE  +  
Sbjct: 234316 GIL--GTTL----------------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLP 234191

Query: 195    LLSQGPS 201
              LL    S
Sbjct: 234190 LLQAAAS 234170



 Score = 75.1 bits (183), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 77/182 (42%)
 Frame = -1

Query: 15     SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVL 74
              S+Y F     +  +P  LG  +G  LLI NVAS  G T   Y     L  +    G +VL
Sbjct: 236984 SIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 75     GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 134
               FPCNQF  QE    EE+  S    R    F+  F + EK  VNG   HPL+ +L+    
Sbjct: 236807 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTCK 236643

Query: 135    APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 194
                    T L                V WNF  FLV  DG  + R++      +IE  +  
Sbjct: 236642 GIL--GTTL----------------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLP 236517

Query: 195    LL 196
              LL
Sbjct: 236516 LL 236511



 Score = 75.1 bits (183), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 83/196 (42%)
 Frame = -3

Query: 1      MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMN 60
              + A  L+ +  +  S+Y F     +  +P  LG  +G  LLI NVAS  G T   Y    
Sbjct: 239352 LLAFLLSLSPQSTMSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETAT 239176

Query: 61     ELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGA 120
               L  +    G +VL FPCNQF  QE    EE+  S    R    F+  F + EK  VNG 
Sbjct: 239175 ALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGE 239011

Query: 121    GAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYS 180
                HPL+ +L+          T L                V WNF  FLV  DG  + R++
Sbjct: 239010 HEHPLYHYLKNTCKGIL--GTTL----------------VKWNFTAFLVDKDGHAVCRFA 238885

Query: 181    RRFQTIDIEPDIEALL 196
                    +IE  +  LL
Sbjct: 238884 PGATVSEIEKKLLPLL 238837


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 71/169 (42%)
 Frame = -3

Query: 10      AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPR 69
               A    SV+ +SA  +  G+ V L    G   LI NVAS       +   +NE+Q+  G R
Sbjct: 1227193 AVGMASVFTYSA--VQNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSR 1227020

Query: 70      GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129
                  VL FPC QF +QE   N EI    ++    G   P   +F++  V G+ A PLF  L
Sbjct: 1227019 RFTVLAFPCAQFANQEPLNNTEIA---QWCEDLGLLFP---VFDRVNVKGSSADPLFQML 1226858

Query: 130     REALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRR 178
               R    AP                         WN+ K+L    GVP R+
Sbjct: 1226857 RAQQGAP------------------------LWNYTKYLCDRSGVPRRK 1226783


>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score = 31.6 bits (70), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 134    PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSR 181
              P+ +   TAL T P+L++ SP+ R+ V  +F   L G   V L  + R
Sbjct: 205014 PSAAQRGTALSTSPQLVSTSPIARSYVVQSFSSHLPGESTVLLGAHHR 205157


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    72   2e-13
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    59   3e-09

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 1/184 (0%)
 Frame = -2

Query: 7      SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR-LVVLG 65
              S YD      D +  D    +G  +LI NVAS  G T   +     L  ++     +VL 
Sbjct: 234658 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 234479

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F +++K  VNG++EHP++ YLK+    
Sbjct: 234478 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 234320

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 234319 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 234188

Query: 186    LKVA 189
              L+ A
Sbjct: 234187 LQAA 234176



 Score = 70.5 bits (171), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 1/182 (0%)
 Frame = -1

Query: 7      SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR-LVVLG 65
              S YD      D +  D    +G  +LI NVAS  G T   +     L  ++     +VL 
Sbjct: 236984 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 236805

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F +++K  VNG++EHP++ YLK+    
Sbjct: 236804 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 236646

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 236645 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 236514

Query: 186    LK 187
              L+
Sbjct: 236513 LQ 236508



 Score = 69.3 bits (168), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 1/182 (0%)
 Frame = -3

Query: 7      SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR-LVVLG 65
              S YD      D +  D    +G  +LI NVAS  G T   +     L  ++     +VL 
Sbjct: 239310 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 239131

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F +++K  VNG++EHP++ YLK+    
Sbjct: 239130 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 238972

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 238971 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 238840

Query: 186    LK 187
              L+
Sbjct: 238839 LQ 238834


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 1/163 (0%)
 Frame = -3

Query: 7       SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLG 65
               S +  SA+  +G+ V    + G A LI NVAS     + +   LNE+Q  +  RR  VL 
Sbjct: 1227178 SVFTYSAVQ-NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLA 1227002

Query: 66      FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPY 125
               FPC QF +QE   N EI    ++    G   P F    +  V G +  P+F  L+ +   
Sbjct: 1227001 FPCAQFANQEPLNNTEI---AQWCEDLGLLFPVF---DRVNVKGSSADPLFQMLRAQQGA 1226840

Query: 126     PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRR 168
               P                         WN+ K+L    G P R+
Sbjct: 1226839 PL------------------------WNYTKYLCDRSGVPRRK 1226783


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    91   5e-19
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    55   6e-08

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
 Frame = -3

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYVLFVNVASYXGLT-GQYIELNALQEELAPFGLV 95
              +IY++    ++G ++ P+   Q+ G  +L  NVAS  G T G Y    AL  +    G +
Sbjct: 239310 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 239140

Query: 96     ILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
              +L FPCNQF  QEPG   E+  +    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 239139 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 238975

Query: 156    CPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 215
              C     +LGT+            ++WNF  FLV  DG  + R+    TVS ++  +L  +
Sbjct: 238974 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 238837

Query: 216    R 216
              +
Sbjct: 238836 Q 238834



 Score = 91.3 bits (225), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
 Frame = -2

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYVLFVNVASYXGLT-GQYIELNALQEELAPFGLV 95
              +IY++    ++G ++ P+   Q+ G  +L  NVAS  G T G Y    AL  +    G +
Sbjct: 234658 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 234488

Query: 96     ILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
              +L FPCNQF  QEPG   E+  +    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 234487 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 234323

Query: 156    CPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 215
              C     +LGT+            ++WNF  FLV  DG  + R+    TVS ++  +L  +
Sbjct: 234322 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 234185

Query: 216    RRQAA 220
              +  A+
Sbjct: 234184 QAAAS 234170



 Score = 89.4 bits (220), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
 Frame = -1

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYVLFVNVASYXGLT-GQYIELNALQEELAPFGLV 95
              +IY++    ++G ++ P+   Q+ G  +L  NVAS  G T G Y    AL  +    G +
Sbjct: 236984 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 236814

Query: 96     ILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
              +L FPCNQF  QEPG   E+  +    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 236813 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 236649

Query: 156    CPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 215
              C     +LGT+            ++WNF  FLV  DG  + R+    TVS ++  +L  +
Sbjct: 236648 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 236511

Query: 216    R 216
              +
Sbjct: 236510 Q 236508


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
 Frame = -3

Query: 38      GTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQYIE-LNALQEELAPFGLVI 96
                +++ Y A  +   + +  ++Y+G   L VNVAS   L    IE LN +Q+        +
Sbjct: 1227181 ASVFTYSA--VQNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 97      LGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156
               L FPC QF  QEP  N+EI    ++    G   P   +F++ +V G      +  L+   
Sbjct: 1227007 LAFPCAQFANQEPLNNTEIA---QWCEDLGLLFP---VFDRVNVKGSSADPLFQMLRAQQ 1226846

Query: 157     PPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIP 194
                               P+      WN+ K+L    G+P
Sbjct: 1226845 GA--------------PL------WNYTKYLCDRSGVP 1226792


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) #
Homo sapiens # Complete
         (197 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   125   2e-29
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    84   5e-17
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    30   0.99 
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   4.0  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    28   6.2  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    27   6.8  
LmjF16_01_20050601_V5.2 [~/leish/curated/chr16/LmjF16_01_2005060...    27   8.2  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  125 bits (313), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
 Frame = -3

Query: 40     SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILA 99
              S+++F     D    +L +++G   ++ NVAS+ G T+  Y     L+ +Y   G  +LA
Sbjct: 239310 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 239131

Query: 100    FPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158
              FPCNQF  QEPG+ EE+K FA   +  +F +  K+CVNG+  HPL+ ++K     KGILG
Sbjct: 239130 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLK--NTCKGILG 238957

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 238956 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 238849



 Score =  123 bits (309), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
 Frame = -1

Query: 40     SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILA 99
              S+++F     D    +L +++G   ++ NVAS+ G T+  Y     L+ +Y   G  +LA
Sbjct: 236984 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 236805

Query: 100    FPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158
              FPCNQF  QEPG+ EE+K FA   +  +F +  K+CVNG+  HPL+ ++K     KGILG
Sbjct: 236804 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLK--NTCKGILG 236631

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 236630 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 236523



 Score =  123 bits (309), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
 Frame = -2

Query: 40     SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILA 99
              S+++F     D    +L +++G   ++ NVAS+ G T+  Y     L+ +Y   G  +LA
Sbjct: 234658 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 234479

Query: 100    FPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158
              FPCNQF  QEPG+ EE+K FA   +  +F +  K+CVNG+  HPL+ ++K     KGILG
Sbjct: 234478 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLK--NTCKGILG 234305

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 234304 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 234197


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 68/133 (51%)
 Frame = -3

Query: 50      DGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE 109
               +G  V L KY G+  ++ NVAS+      N   L ++   Y      +LAFPC QF  QE
Sbjct: 1227151 NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFPCAQFANQE 1226972

Query: 110     PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFL 169
               P +N EI ++     + F +F ++ V G  A PL++ ++ Q         A  WN+TK+L
Sbjct: 1226971 PLNNTEIAQWCEDLGLLFPVFDRVNVKGSSADPLFQMLRAQQ-------GAPLWNYTKYL 1226813

Query: 170     IDKNGCVVKRYGP 182
                D++G   ++  P
Sbjct: 1226812 CDRSGVPRRKLEP 1226774



 Score = 27.3 bits (59), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 8       RLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
               R  + A +C  LAA GL  + C  R  +RC +S
Sbjct: 2554620 RRSQTARMCAGLAAWGLPVSSCCVRSAFRCRKS 2554522


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 30.4 bits (67), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
 Frame = +1

Query: 5      RLCRLLKPALLCGALA------APGLAGTMCASRDDWRC 37
              R CR    + LC + A      AP  AGT   SR  WRC
Sbjct: 377557 RFCRSTACSTLCPSSARRWVKSAPSPAGTASTSRTSWRC 377673


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.1 bits (61), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -1

Query: 4      GRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAK 47
              GR  RL  PAL  GA  A       C  R +WRCA +    SA+
Sbjct: 384304 GRGWRLSGPALAMGAAHA-----CRCHKRQEWRCATAQGVPSAE 384188


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 27.7 bits (60), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 3      LGRLCRLLKPALLCGALAAP-GLAGTMCASRDDWRCA 38
              +GR+CR   PA  CGAL    G+ G        WRCA
Sbjct: 412006 VGRVCRHPMPACTCGALRHL*GVLGLEALFDVRWRCA 412116


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 27.3 bits (59), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 12      PALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNL 56
               P  + G  A   +A   C  R  WRC R+      KD+ G++ NL
Sbjct: 1372677 PHYILGCFA---VAAAAC-DRRTWRCLRNASR*MGKDVTGYVANL 1372799


>LmjF16_01_20050601_V5.2
              [~/leish/curated/chr16/LmjF16_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 714659

 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 4      GRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
              GR C    PA  C A   PG AGT   +    R  RS
Sbjct: 591902 GRSCTRTAPAASCAARTHPGTAGTPRGAAPRGRSPRS 592012



 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 4      GRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
              GR C    PA  C A   PG AGT   +    R  RS
Sbjct: 595271 GRSCTRTAPAASCAARTHPGTAGTPRGAAPRGRSPRS 595381



 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 4      GRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
              GR C    PA  C A   PG AGT   +    R  RS
Sbjct: 598643 GRSCTRTAPAASCAARTHPGTAGTPRGAAPRGRSPRS 598753


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000008_1.0 # Protein # Glutathione peroxidase 5 (GPx5) #
Homo sapiens # Complete
         (221 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    90   1e-18
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    57   1e-08
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    29   2.3  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 97/205 (47%), Gaps = 1/205 (0%)
 Frame = -3

Query: 13     LLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATY 72
              +LLA  +  SP Q  M          +IYD++    +   Y    Q+ G  +L  NVA+ 
Sbjct: 239355 ILLAFLLSLSP-QSTM----------SIYDFKVNGSDHQPY-DLGQHKGHPLLIYNVASK 239212

Query: 73     XGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPS 131
               G T   Y    AL  + K  G +VL FPCNQF  QEPG  +E+       R    F   
Sbjct: 239211 CGFTKGGYETATALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAE 239047

Query: 132    FQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPD 191
              F + EK  VNGE E  ++ +LK++C     ILGT             ++WNF  FLV  D
Sbjct: 239046 FPIMEKVCVNGEHEHPLYHYLKNTC---KGILGTTL-----------VKWNFTAFLVDKD 238909

Query: 192    GIPVMRWSHRATVSSVKTDILAYLK 216
              G  V R++  ATVS ++  +L  L+
Sbjct: 238908 GHAVCRFAPGATVSEIEKKLLPLLQ 238834



 Score = 88.2 bits (217), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 1/179 (0%)
 Frame = -1

Query: 39     TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYXGLT-AQYPELNALQEELKPYGLVVL 97
              +IYD++    +   Y    Q+ G  +L  NVA+  G T   Y    AL  + K  G +VL
Sbjct: 236984 SIYDFKVNGSDHQPY-DLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 98     GFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCP 157
               FPCNQF  QEPG  +E+       R    F   F + EK  VNGE E  ++ +LK++C 
Sbjct: 236807 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC- 236646

Query: 158    HPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 216
                  ILGT             ++WNF  FLV  DG  V R++  ATVS ++  +L  L+
Sbjct: 236645 --KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 236508



 Score = 88.2 bits (217), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 1/179 (0%)
 Frame = -2

Query: 39     TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYXGLT-AQYPELNALQEELKPYGLVVL 97
              +IYD++    +   Y    Q+ G  +L  NVA+  G T   Y    AL  + K  G +VL
Sbjct: 234658 SIYDFKVNGSDHQPY-DLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 98     GFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCP 157
               FPCNQF  QEPG  +E+       R    F   F + EK  VNGE E  ++ +LK++C 
Sbjct: 234481 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC- 234320

Query: 158    HPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 216
                  ILGT             ++WNF  FLV  DG  V R++  ATVS ++  +L  L+
Sbjct: 234319 --KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 234182


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 1/175 (0%)
 Frame = -3

Query: 38      GTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYXGLTAQYPE-LNALQEELKPYGLVV 96
                +++ Y A+   K   V  ++Y G   L VNVA+   L +   E LN +Q+        V
Sbjct: 1227181 ASVFTYSAVQNGKT--VVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 97      LGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSC 156
               L FPC QF  QEP +N EI    ++    G   P   +F++ +V G     +F  L+   
Sbjct: 1227007 LAFPCAQFANQEPLNNTEI---AQWCEDLGLLFP---VFDRVNVKGSSADPLFQMLRAQQ 1226846

Query: 157     PHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 211
                 P                     WN+ K+L    G+P  +     ++ +++  I
Sbjct: 1226845 GAP--------------------LWNYTKYLCDRSGVPRRKLEPGCSMDALRQSI 1226741


>LmjF29_01_20050601_V5.2
            [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
            This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 29.3 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 10   LLPLLLACFVQTSPKQEKMKMDC 32
            LL  L AC  Q  P QE+ KM+C
Sbjct: 7464 LLERLCACLCQGGPAQERGKMEC 7532


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    88   5e-18
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    55   3e-08
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    30   1.2  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 3/183 (1%)
 Frame = -3

Query: 37     TGTIYEYGALTLNGEEYIQFK--QFAGKHVLFVNVAAYXGLA-AQYPELNALQEELKNFG 93
              T +IY++    +NG ++  +   Q  G  +L  NVA+  G     Y    AL  + K+ G
Sbjct: 239316 TMSIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLG 239146

Query: 94     VIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLK 153
               +VLAFPCNQF  QEPGT  E+     + C  + F   F + EK  VNGE E  ++ +LK
Sbjct: 239145 FMVLAFPCNQFAGQEPGTEEEV---KSFAC--TRFKAEFPIMEKVCVNGEHEHPLYHYLK 238981

Query: 154    NSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILE 213
              N+C     +LG++            ++WNF  FLV  DG  V  +   A VS ++  +L 
Sbjct: 238980 NTC---KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLP 238843

Query: 214    YLK 216
               L+
Sbjct: 238842 LLQ 238834



 Score = 85.1 bits (209), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
 Frame = -1

Query: 39     TIYEYGALTLNGEEYIQFK--QFAGKHVLFVNVAAYXGLA-AQYPELNALQEELKNFGVI 95
              +IY++    +NG ++  +   Q  G  +L  NVA+  G     Y    AL  + K+ G +
Sbjct: 236984 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 236814

Query: 96     VLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNS 155
              VLAFPCNQF  QEPGT  E+     + C  + F   F + EK  VNGE E  ++ +LKN+
Sbjct: 236813 VLAFPCNQFAGQEPGTEEEV---KSFAC--TRFKAEFPIMEKVCVNGEHEHPLYHYLKNT 236649

Query: 156    CPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYL 215
              C     +LG++            ++WNF  FLV  DG  V  +   A VS ++  +L  L
Sbjct: 236648 C---KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 236511

Query: 216    K 216
              +
Sbjct: 236510 Q 236508



 Score = 85.1 bits (209), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
 Frame = -2

Query: 39     TIYEYGALTLNGEEYIQFK--QFAGKHVLFVNVAAYXGLA-AQYPELNALQEELKNFGVI 95
              +IY++    +NG ++  +   Q  G  +L  NVA+  G     Y    AL  + K+ G +
Sbjct: 234658 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 234488

Query: 96     VLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNS 155
              VLAFPCNQF  QEPGT  E+     + C  + F   F + EK  VNGE E  ++ +LKN+
Sbjct: 234487 VLAFPCNQFAGQEPGTEEEV---KSFAC--TRFKAEFPIMEKVCVNGEHEHPLYHYLKNT 234323

Query: 156    CPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYL 215
              C     +LG++            ++WNF  FLV  DG  V  +   A VS ++  +L  L
Sbjct: 234322 C---KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 234185

Query: 216    K 216
              +
Sbjct: 234184 Q 234182


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
 Frame = -3

Query: 38      GTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYXGLAAQYPE-LNALQEELKNFGVIV 96
                +++ Y A+  NG+  +  ++++G   L VNVA+   LA+   E LN +Q+   +    V
Sbjct: 1227181 ASVFTYSAVQ-NGKTVV-LQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 97      LAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156
               LAFPC QF  QEP  N+EI       C   G +  F +F++ +V G     +F  L+   
Sbjct: 1227007 LAFPCAQFANQEPLNNTEI----AQWCEDLGLL--FPVFDRVNVKGSSADPLFQMLR--- 1226855

Query: 157     PPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVP 194
                        + Q    P+      WN+ K+L    GVP
Sbjct: 1226854 ---------AQQ--GAPL------WNYTKYLCDRSGVP 1226792


>LmjF32_01_20050601_V5.3
             [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 30.4 bits (67), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -2

Query: 123   CPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWN 182
             CP    +   +   KG    E+E  V T  K + PP S +  S+ QLF   + V+ + W+
Sbjct: 83508 CPPQRLLVRVEDPTKGIHQAEEESGVDTPRKKTTPPPS-VTSSNIQLFVPDIGVNTLAWS 83332

Query: 183   FEK 185
             +E+
Sbjct: 83331 YER 83323


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000010_1.0 # Protein # Glutathione peroxidase 7 (GPx7) #
Homo sapiens # Complete
         (187 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   101   3e-22
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    95   4e-20

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  101 bits (252), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/178 (34%), Positives = 87/178 (48%), Gaps = 5/178 (2%)
 Frame = -3

Query: 5      TVAAAWLLLWAAACAQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQHY 64
              T+  A+LL   +   Q     YDFK      +   L +++G   L+ NVAS+ GFT   Y
Sbjct: 239358 TILLAFLL---SLSPQSTMSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGY 239188

Query: 65     RALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTG 124
                   L        F VLAFPCNQF  QEP + +E++SFA   +   FP+  K+ V G  
Sbjct: 239187 ETATALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEH 239008

Query: 125    AHPAFKYLAQT-SGKEPT----WNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVR 177
               HP + YL  T  G   T    WNF  +LV  DG  V  + P  +V E+  ++  L++
Sbjct: 239007 EHPLYHYLKNTCKGILGTTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 238834



 Score =  100 bits (248), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
 Frame = -1

Query: 26     YDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
              YDFK      +   L +++G   L+ NVAS+ GFT   Y     L        F VLAFP
Sbjct: 236978 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 236799

Query: 86     CNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQT-SGKEPT--- 141
              CNQF  QEP + +E++SFA   +   FP+  K+ V G   HP + YL  T  G   T   
Sbjct: 236798 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLV 236619

Query: 142    -WNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVR 177
               WNF  +LV  DG  V  + P  +V E+  ++  L++
Sbjct: 236618 KWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 236508



 Score =  100 bits (248), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
 Frame = -2

Query: 26     YDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
              YDFK      +   L +++G   L+ NVAS+ GFT   Y     L        F VLAFP
Sbjct: 234652 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 234473

Query: 86     CNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQT-SGKEPT--- 141
              CNQF  QEP + +E++SFA   +   FP+  K+ V G   HP + YL  T  G   T   
Sbjct: 234472 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLV 234293

Query: 142    -WNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVR 177
               WNF  +LV  DG  V  + P  +V E+  ++  L++
Sbjct: 234292 KWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 234182


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 78/151 (51%)
 Frame = -3

Query: 26      YDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
               + + AV   GK V L+KY G  +L+VNVAS       +   L ++Q+  G   F VLAFP
Sbjct: 1227172 FTYSAVQ-NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFP 1226996

Query: 86      CNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFW 145
               C QF  QEP +N EI  +      + FP+F ++ V G+ A P F+ L    G  P WN+ 
Sbjct: 1226995 CAQFANQEPLNNTEIAQWC-EDLGLLFPVFDRVNVKGSSADPLFQMLRAQQGA-PLWNYT 1226822

Query: 146     KYLVAPDGKVVGAWDPTVSVEEVRPQITALV 176
               KYL    G      +P  S++ +R  I  ++
Sbjct: 1226821 KYLCDRSGVPRRKLEPGCSMDALRQSIECVL 1226729


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Homo sapiens # Complete
         (209 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    98   5e-21
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    85   4e-17
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    27   7.5  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    27   8.8  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 97.8 bits (242), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 80/142 (56%)
 Frame = -3

Query: 57      GRTVSLEKYKGKVSLVVNVASDXQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEP 116
               G+TV L+KY G  +L+VNVAS   L   N   L E+ + +G   F+VLAFPC QF   EP
Sbjct: 1227148 GKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFPCAQFANQEP 1226969

Query: 117     RPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQ 176
                 + E+  +  ++ G+ FP+F ++ + GS  +P F+ L  + +  P WN+ KYL +  G 
Sbjct: 1226968 LNNTEIAQWC-EDLGLLFPVFDRVNVKGSSADPLFQML-RAQQGAPLWNYTKYLCDRSGV 1226795

Query: 177     VVKFWKPEEPIEVIRPDIAALV 198
                 +  +P   ++ +R  I  ++
Sbjct: 1226794 PRRKLEPGCSMDALRQSIECVL 1226729


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 5/183 (2%)
 Frame = -3

Query: 22     LLSIVLCTVTLFLLQLKFLKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDXQL 81
              LLS+    +  FLL L        S Y F+V  +  +   L ++KG   L+ NVAS    
Sbjct: 239376 LLSLFNTILLAFLLSLS--PQSTMSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGF 239203

Query: 82     TDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIK 141
              T   Y     L+ ++    F VLAFPCNQF   EP   +EV+SFA   +   FPI  K+ 
Sbjct: 239202 TKGGYETATALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVC 239023

Query: 142    ILGSEGEPAFRFLVDSSK-----KEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAA 196
              + G    P + +L ++ K        +WNF  +LV+ +G  V  + P   +  I   +  
Sbjct: 239022 VNGEHEHPLYHYLKNTCKGILGTTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLP 238843

Query: 197    LVR 199
              L++
Sbjct: 238842 LLQ 238834



 Score = 83.6 bits (205), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 5/160 (3%)
 Frame = -1

Query: 45     NSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDXQLTDRNYLGLKELHKEFGPSHFSVL 104
              +S Y F+V  +  +   L ++KG   L+ NVAS    T   Y     L+ ++    F VL
Sbjct: 236987 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 105    AFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSK----- 159
              AFPCNQF   EP   +EV+SFA   +   FPI  K+ + G    P + +L ++ K     
Sbjct: 236807 AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGT 236628

Query: 160    KEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVR 199
                 +WNF  +LV+ +G  V  + P   +  I   +  L++
Sbjct: 236627 TLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 236508



 Score = 83.6 bits (205), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 5/160 (3%)
 Frame = -2

Query: 45     NSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDXQLTDRNYLGLKELHKEFGPSHFSVL 104
              +S Y F+V  +  +   L ++KG   L+ NVAS    T   Y     L+ ++    F VL
Sbjct: 234661 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 105    AFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSK----- 159
              AFPCNQF   EP   +EV+SFA   +   FPI  K+ + G    P + +L ++ K     
Sbjct: 234481 AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGT 234302

Query: 160    KEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVR 199
                 +WNF  +LV+ +G  V  + P   +  I   +  L++
Sbjct: 234301 TLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 234182


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 27.3 bits (59), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 99     SHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEP 149
              SH+SV+  P N F    PRPS ++ +     Y V      +   L S   P
Sbjct: 771983 SHYSVIKCPQNDFHRRFPRPSFKLRTLLPHPYRVLHKSVVRFPSLASIASP 772135


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 27.3 bits (59), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 18     VFAVLLSIVLCTVTLFLLQLKFLKPKINSFYAFEVKDAK 56
              V +VL   + CTV  F   L  L+P  NSF+    ++ +
Sbjct: 503360 VLSVLSCCLQCTVLSFFAFLSLLRPTTNSFHELARREER 503476


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    32   0.39 

>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 32.3 bits (72), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -3

Query: 158    HASDGWAF----KNNMDIRNHQNLQDRLQAAHLLLARSPQCP 195
              H+++G A+    K++M I+ H + QDRLQA  +     P CP
Sbjct: 974694 HSNNGTAYACIDKDSMQIQTHTHTQDRLQATCM----QPGCP 974581


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    33   0.17 
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    32   0.46 
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    32   0.63 
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    30   2.0  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    30   2.6  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    28   5.0  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    28   8.7  

>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 33.5 bits (75), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 167    SDGWAIPGDSSLSFEVKKHQN--QEDRCAAAQQLLERFSLPPQCRV 210
              +DGW++P      F V  H+    E   A +Q+L  RF LPP C V
Sbjct: 603209 ADGWSVPPSFFRHFRVNSHRKIRAELDVAGSQELRRRF-LPPPCTV 603075



 Score = 30.0 bits (66), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -2

Query: 43     RSKSTRGEWRRMLTS-----EGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVS 90
              R  S R  WRR  TS     +  RC ++S    AY++ +     P+SS  H +
Sbjct: 222306 RHTSPRRTWRRAPTSTSFRPQATRCRYRSGSCAAYRRTRYLPRTPSSSPTHAT 222148


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 32.0 bits (71), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 168    DGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLE-----RFSLPPQCRVVADRMDNN 218
              D W + G  S + E+     Q+  CAAA + +      R SLPPQ     DRMD++
Sbjct: 593582 DLWEVGGCGSFAAELGALGRQKTGCAAATRDVRDTIPFRVSLPPQRVESHDRMDDD 593415


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 31.6 bits (70), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 200    ERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQE 253
              E  +LP + R  +D +         +  ERVC+  R ++ +   KGP S+ L++
Sbjct: 284707 EHHTLPREYRHYSDSLLATLPFISSLCLERVCVCARARLPHNAKKGPASHALED 284868


>LmjF35_01_20050601_V5.2
             [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.0 bits (66), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +1

Query: 48    RGEWRRMLTSEGLRCVWKS----FLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQ 103
             RG  +R ++  G   VW+S    +LL            PN+  + V +     + G G+ 
Sbjct: 63265 RGTPQRRISGPGTHSVWESQTAPYLL------------PNAEPLVVVAGWSAYDGGGGSA 63408

Query: 104   EKIAEGATCHLLDFASPERPLVVN 127
               IA       LD  +P+RP +V+
Sbjct: 63409 RCIATDGGGQALDGVAPQRPAIVH 63480


>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 29.6 bits (65), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 229     RVCIVQRQKIAYLGGKGPFS 248
               R  +V+RQK A+ GGKG FS
Sbjct: 1253278 RTLLVRRQKTAHFGGKGAFS 1253219


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 28.5 bits (62), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 107    AEGATCHLLDFASPERPLVVNFGSAT 132
              A+ A+CH    ++P RP+   +G+A+
Sbjct: 462730 AKSASCHAASMSTPHRPVPATYGTAS 462807


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 27.7 bits (60), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
 Frame = -2

Query: 57     SEGLRCVWKSF-LLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLL 115
              SEG +  +  F   D+  +++   +A ++       ++G  ++ + + E  A+    H+L
Sbjct: 595250 SEGSQADYSLFDWYDSVTELETSHEAGSAVAAAKGGSKGACSASDTSYEAAADCRRSHVL 595071

Query: 116    ----DFASPE--RPLVVNFGSATXPPFTSQL 140
                   +  PE  +PLV +  + T PPF S L
Sbjct: 595070 RSRYTYVMPEDLQPLVASRWAGTYPPFVSTL 594978


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF02_01_20050601_V5.2 [~/leish/curated/chr2/LmjF02_01_20050601...    30   1.7  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    30   2.6  
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    29   4.1  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    28   8.3  

>LmjF02_01_20050601_V5.2
              [~/leish/curated/chr2/LmjF02_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 355714

 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -2

Query: 194    RSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDG 253
              R+   R +A+R    GA   A+ L     S+  A GA  +R  V+++ +   +  + P+ 
Sbjct: 331047 RASNARSAASR--NDGAASRAVALAGAVGSAVCAEGA--DRFVVLRAASTSVRTSKAPED 330880

Query: 254    YQVSELRTWLERYD 267
              + V     WL RY+
Sbjct: 330879 FSVRHFAWWLRRYE 330838


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 29.6 bits (65), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 62     SEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKL 97
              ++G+E PP  PP  + D+ R C   S     HGQ L
Sbjct: 247256 AQGKESPPYPPPTALRDEWRRCCCCSRVNAPHGQPL 247149


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 28.9 bits (63), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 48     RRRRGQPEPEVELNSEGEEVPPDDPP 73
              RR RG+ EP+VE + E E  PP  PP
Sbjct: 278556 RRGRGETEPKVETSREAEAGPP--PP 278627


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 28.1 bits (61), Expect = 8.3,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
 Frame = -1

Query: 5      LLLHSLRLCAQTASCLVLFPRFL---GTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELN 61
              +LLHS      TASC  +FPR     G A          +    + RR R  PEP    +
Sbjct: 973769 MLLHSATFVLNTASCAAIFPRLFTPEGAATN-------AVVGRCMARRSRTLPEPPTLRS 973611

Query: 62     SEGEEVPPDDP 72
              S      P  P
Sbjct: 973610 SSNSTREPLQP 973578


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000012_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Homo sapiens # Complete
         (235 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...   100   7e-22
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    31   0.68 
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    29   3.9  
LmjF03_01_20050601_V5.2 [~/leish/curated/chr3/LmjF03_01_20050601...    28   4.9  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    28   6.6  

>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score =  100 bits (250), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
 Frame = +3

Query: 68     AVFGMGXFWGAERKFW--VLKGVYSTQVGFAGGYTSNP-TYKEVCSEKTGHAEVVRVVYQ 124
              A F  G +WG E  F       + S QVGF GG      TY EV    TGHAEV+ ++Y 
Sbjct: 570105 ATFAAGCYWGTEHFFVRNFKDSIVSHQVGFMGGIEGKAVTYSEVTKGTTGHAEVLDLMYD 570284

Query: 125    PEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALS-------SKE 177
              PE +S+++LL  F+  H+ T   RQ  D GT YRSAI+  + +Q + A +       + E
Sbjct: 570285 PEKVSYKDLLSFFFRMHNSTTVNRQAGDIGTNYRSAIFYHNEEQKKEAEAYIAKLNGADE 570464

Query: 178    NYQKVLSEHGFG-PITTDIREGQTFYYAEDYHQQYLSKNPNGYC 220
                    S+   G P  T + +  TFY A + HQ YL K+PNGYC
Sbjct: 570465 KLHSSFSKAFAGAPCITGLEKAGTFYPAHEGHQNYLEKHPNGYC 570596


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 31.2 bits (69), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 187    GFGPITTDIREGQTFYYAEDYHQQYLSKNP 216
              GF  +  D    + + Y EDYHQ Y SKNP
Sbjct: 626322 GFEEVNPD----EEYRYTEDYHQLYYSKNP 626399


>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 28.9 bits (63), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = -2

Query: 1      MLSATRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAKHHVNGNRTVEP 60
              +L+ +  AC L+     F V    + AS    P+ A  G    T  +   HVNG  +  P
Sbjct: 128909 ILAISAVACSLVAAAGRFVV----SLASAAARPKTATDGHNAVTNTSL*QHVNGCCSESP 128742

Query: 61     FPEGTQMAV 69
               P G+ +A+
Sbjct: 128741 CPSGSGLAI 128715


>LmjF03_01_20050601_V5.2
              [~/leish/curated/chr3/LmjF03_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 384518

 Score = 28.5 bits (62), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 36     ALPGRKEQTPVAAKHHVNGNRTVEPFPEGTQMAVFG 71
              AL   KE  P   ++H +     EPFP   ++A+FG
Sbjct: 367534 ALEEAKEAAPAPPRYHAHSPPQDEPFPFSLRLALFG 367427


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 28.1 bits (61), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 136    VFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKV 182
              VFW   DP +G+R+    G Q   A +    +Q   A  +   Y+K+
Sbjct: 529522 VFWLQVDPKEGLRRAQSRGDQKAGADHWRYVEQRAQAEIADRVYKKI 529662


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF12_01_20050601_V5.2 [~/leish/curated/chr12/LmjF12_01_2005060...    31   5.1  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    31   5.4  

>LmjF12_01_20050601_V5.2
             [~/leish/curated/chr12/LmjF12_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 675347

 Score = 30.8 bits (68), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -3

Query: 440   NVKKSQLPVQLDLGGMLTALEKKQHSQHAKQSSKPVVVSVGAVPVLSKECASGERGRRMS 499
             ++ ++++P    LG        + H QH+  +S P    + AVP+    C    +GRR +
Sbjct: 58968 HLSRTEVPYGTCLGCCYRWAVSRHHPQHSNTASFPYSAGLSAVPLTLWWCVPVRKGRRSA 58789

Query: 500   QMK 502
               K
Sbjct: 58788 HRK 58780


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 30.8 bits (68), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 517    KGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDD 560
              KG +RE+P   +PT  +K   K+  ER+ ++  +A++ A  S++
Sbjct: 639566 KGTKREVPTESEPTKQRKGKAKKGAEREGKISRSAIASASRSEE 639435


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Homo sapiens # Complete
         (392 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   252   3e-67
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   9.4  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  252 bits (644), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 159/376 (42%), Positives = 210/376 (55%), Gaps = 14/376 (3%)
 Frame = -3

Query: 7       FNPESYELDKSFRLTRFTELKGXGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGI 66
               F+P S  L   F+LT +T LKG  CK+PQ  L  LL+ L     Q+D            +
Sbjct: 2095666 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSATPGQKD------------V 2095523

Query: 67      GMDTCVIPLRHG-----GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDN 121
               GMD  ++PL H       L LV TTD+ +P V DP++ G+I  ANVLSDLY+MG+ +CD 
Sbjct: 2095522 GMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDT 2095343

Query: 122     MLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQ 181
               MLMLL  S +M + ER      I++GF + A  A T+VTGGQTV+NPW ++GGVA  V  
Sbjct: 2095342 MLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTVMNPWPLIGGVAMAVVS 2095163

Query: 182     PNEFIMPDNAV-PGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLV--VTQEDVELAYQ 238
                 E + P   +  GD+LVLTKPLG QVAV + QWL  P    +  +   ++ E++E  Y 
Sbjct: 2095162 EAEMVRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYN 2094983

Query: 239     EAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQR-----NEVSFVIHNL 293
                A  +M RLNR  A LM    AH ATD+TGFGILGHA N    Q        +  V+  L
Sbjct: 2094982 MATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDAPRSLCLVLERL 2094803

Query: 294     PVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQ-AARFCAEIKSPKYGEGHQAW 352
               P+     A SK   + + L+ G   ETSGGLL+  P    AA FCAE+ +     G  +W
Sbjct: 2094802 PMFKTAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTAAAAFCAELTA--VDGGCPSW 2094629

Query: 353     IIGIVEKGNRTARIID 368
               I+G VE  +R    +D
Sbjct: 2094628 IVGHVE--DRATNAVD 2094587


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.5 bits (62), Expect = 9.4,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 49/134 (36%)
 Frame = -2

Query: 259    NAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCP 318
              +AH  T +T   I  H  N A++Q  E +     LP   K    S     +  L      
Sbjct: 389658 HAHTHTHMTRTCICLHICN-AQEQEKEATQQQQPLPPPRKKKGRSACIEALLTLRMTMRV 389482

Query: 319    ETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ 378
              +  GG    L R  +            G GH AW++ ++      A+ + + R I VA  
Sbjct: 389481 DPGGGNRCSLTRLLSVSVSGPPHRFACGGGHTAWVVRLMLSLTPAAKRMGRERFINVAAD 389302

Query: 379    VATQNVNPTPGATS 392
               A    N  P A +
Sbjct: 389301 TANSAQNR*PAAAA 389260


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   243   2e-64
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    29   8.4  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  243 bits (620), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 167/396 (42%), Positives = 217/396 (54%), Gaps = 15/396 (3%)
 Frame = -3

Query: 38      FEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97
               F+P +LGL   ++LT ++ +KG  CK+PQ  LL LL  L+              GQ++  
Sbjct: 2095666 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSA-----------TPGQKD-- 2095526

Query: 98      QEAGLPAGAGPSPTFPALGIGMDSCVIPLRHG-----GLSLVQTTDFFYPLVEDPYMMGR 152
                                  +GMD  ++PL H       L LV TTDFF+P V DP++ G+
Sbjct: 2095525 -------------------VGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 2095403

Query: 153     IACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVKGFRDAAEEGGTAVTG 212
               I  ANVLSDLY+MGI +CD MLMLL+ S  M E ER   T  ++KGF + A    T VTG
Sbjct: 2095402 IGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTG 2095223

Query: 213     GQTVVNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPER 271
               GQTV+NPW +IGGVA  V    E + P   +  GD+LVLTKPLG QVAVN  QWL  P  
Sbjct: 2095222 GQTVMNPWPLIGGVAMAVVSEAEMVRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSP 2095043

Query: 272     WNKVKMV--VSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 329
                 +  +   +S EE+E  Y  A  +M  LNR  A LM    AH ATD+TGFGILGH+ N 
Sbjct: 2095042 LYEEAIAGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNF 2094863

Query: 330     AKQQR-----NEVSFVIHNLPIIAKMAAVSKA-SGRFGLLQGTSAETSGGLLICLPREQ- 382
                  Q        +  V+  LP+     A SK  + ++ LL+G SAETSGGLL+  P    
Sbjct: 2094862 GAAQAVGDAPRSLCLVLERLPMFKTAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTA 2094683

Query: 383     AARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 418
               AA FC+E+  +    G  +WIVG VE  +R    +D
Sbjct: 2094682 AAAFCAEL--TAVDGGCPSWIVGHVE--DRATNAVD 2094587


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 28.9 bits (63), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 244    VGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVK 276
              VGD  +LT P    V    HQ +D P R + ++
Sbjct: 297833 VGDTCILTSPAALPVGATVHQMVDWPRRMDHMQ 297931


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo
sapiens # Complete
         (124 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    27   3.5  
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    26   8.1  

>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 26.9 bits (58), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
 Frame = -2

Query: 107    CPWFRPCIKAF---GRQWE 122
              CPW+R  +  F   GR+WE
Sbjct: 115081 CPWYRSGVSTFNVRGREWE 115025


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 25.8 bits (55), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 9      SGCLVPAFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNL--LCSS 54
              S C++PA  LRL    VLQ    FG      A R+   SS+L  +CSS
Sbjct: 505912 SVCVLPATKLRLKKIAVLQVTRDFGV-----ALRDSTLSSHLSWVCSS 506040


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo
sapiens # Complete
         (122 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF03_01_20050601_V5.2 [~/leish/curated/chr3/LmjF03_01_20050601...    27   2.3  

>LmjF03_01_20050601_V5.2
              [~/leish/curated/chr3/LmjF03_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 384518

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 38     IEHCTSXRVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLL--RP 86
              I HC     YG +AAALS+  R     LP+  NP   R   F   LL  RP
Sbjct: 370596 ILHCR*DSWYGADAAALSRKGRC---ALPLPSNPLSARFSPFRDVLLPCRP 370453


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000015_1.0 # Protein # Selenoprotein I (SelI) # Homo
sapiens # Complete
         (397 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   103   3e-22
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    47   2e-05
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    29   7.8  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    28   8.4  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  103 bits (256), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 112/421 (26%), Positives = 182/421 (43%), Gaps = 39/421 (9%)
 Frame = -3

Query: 5       EYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFN 64
               EY+ P  L    KYKYS+ D + +S YV+  +WN +V + P  +APN ITF+GFL+ + +
Sbjct: 2267419 EYIPPAYLPNLRKYKYSSTDLSIVSRYVLQRYWNFVVNLVPMTIAPNCITFTGFLIGMSS 2267240

Query: 65      FLLMAY---FDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLG 121
                 L+ Y   F+   Y         P W         F   TLD +DGKQARRT + +PLG
Sbjct: 2267239 TALLLYYYFFEEGVY---------PSWCLYYAAFALFAYQTLDAIDGKQARRTGTGSPLG 2267087

Query: 122     ELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILF 181
               ELFDHG D++     ++ V        T V  F L  +  + LF+ I   WE+++TG   
Sbjct: 2267086 ELFDHGCDAFLTPLVLLNVS--LATYMTSVERFWLSTISSMSLFTVI---WEQFSTGTFD 2266922

Query: 182     LPWGYDISQVTI--SFVYIVTAVVGVEAW-----------YEPFLFNF------------ 216
               L +    ++  I    ++IV+ V G   W           Y P L  F            
Sbjct: 2266921 LGYVNGPAEGIILNCVLFIVSGVYGKSIWDISAVGPYDVAYPPVLSPFFPGCSGTVHIES 2266742

Query: 217     LYRDLFTAMIIGCALCVTLPMSLLNFFRSYKNNTLKLNSVYEAMVPLFSPCLLFILSTAW 276
               +   LF   +I C   +     L+N   +    T+  + V   +    +P +        
Sbjct: 2266741 VRSVLFILFLISCPFTI-----LVNVVHTVLRPTVHASKVTPMLA--LAPIITMTALVVH 2266583

Query: 277     ILWSPSDILELHPRVFYFMVGTAFANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNL 336
               +     ++    P       G   + +  +L + ++S+    T+NW +V  FL +   + 
Sbjct: 2266582 VFVVFPNLTVRFPFAMEISYGLLMSITVTRLTLSRLSAMPYRTVNWHIVLFFLALAAASA 2266403

Query: 337     ----GVAS----YVESILLYTLTTAFTLAHIHYGVRVVK---QLSSHFQIYPFSLRKPNS 385
                   G AS     VE++L +TLT     A + YG  ++    Q++ +  I   +++   S
Sbjct: 2266402 MHYAGDASVSHDVVETVLGWTLTGLSVFAAMQYGHMILSAFTQIARYLSISIMTIKPNKS 2266223

Query: 386     D 386
               D
Sbjct: 2266222 D 2266220


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 30/217 (13%)
 Frame = +2

Query: 22     AVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPG 81
              + D + ++ Y+  PF++ +V+ +P    PN +T  G    +   +L+    P       G
Sbjct: 333140 SADPSIMAEYLFFPFYDYVVQFYPQSWVPNKVTLVGIFSTISASVLLLSSMPAGLQFQSG 333319

Query: 82     HKHV------------------------------PDWVWIVVGILNFVAYTLDGVDGKQA 111
                 +                              P+ + I+ G LN +    D  DG+ A
Sbjct: 333320 RMQLLPASLVEDAAMLQMPPLSPTQMTPILSFISPNLMLILCGSLNVLYCVADNTDGRLA 333499

Query: 112    RRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSH 171
              RR   ++ +GE  DHGLD  + +     V+++ G     V+   L      + F  +L H
Sbjct: 333500 RRDKKTSVIGEYLDHGLDCVTSLLSTCCVFALVGSLCNMVTSVCL------IAFVTVLCH 333661

Query: 172    WEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEAW 208
                 +   I    WG  I+ V  + +     + GV  W
Sbjct: 333662 TLHFEKNIFI--WGNRIATVDEAMI-----LFGVSMW 333751



 Score = 32.3 bits (72), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 95     ILNFVAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIF 144
              +L  ++ T   +DG  ARR  S+T LG++F     S + V+  +T+  +F
Sbjct: 566979 LLLVISITCGSLDGVHARRCRSATSLGDIFSRICSSMARVFMALTLLEVF 567128


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 28.9 bits (63), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 267     CLLFILSTAWILWSPSDILEL 287
               CL+F++ T W+L SP  IL L
Sbjct: 1934171 CLVFVICTCWVLVSPFCILNL 1934233


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 28.5 bits (62), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +3

Query: 142    SIFGRGSTGVSVFVLYLLLWV-VLFSFILSHWEKYNT--GILFLPWGYDISQVTISF 195
              ++ GR S  V+++V + + WV +LF  + S   + +   G  +  WGY  +  T+S+
Sbjct: 515535 AVSGRDSQRVTIYVFFCIAWVHLLFVILSSALSQIDVVGGGCYTFWGYKANCDTVSY 515705


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    27   3.0  
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    26   3.7  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    26   3.7  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    26   4.0  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    26   5.1  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    26   5.2  
LmjF10_01_20050601_V5.2 [~/leish/curated/chr10/LmjF10_01_2005060...    26   5.3  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    26   5.4  

>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 26.6 bits (57), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -3

Query: 49      RRSYGNSSDSRYDDGRGPPGNPPRRMG 75
               RRSY N S +R  DGRG  G+PPR  G
Sbjct: 1326882 RRSYDNGSGARGADGRG-RGSPPRGSG 1326805


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 26.2 bits (56), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 66     PPGNPPRRMGRINHLRGPSPPP 87
              PP  PP R    NH R P  PP
Sbjct: 300449 PPPLPPHRYASGNHARFPHLPP 300514


>LmjF30_01_20050601_V5.2
               [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 26.2 bits (56), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 46      VKKRRSYGNSSDSRYDDGRGPPGNPPRRMG 75
               V++RRS     DS +D+  GPP    +++G
Sbjct: 1290607 VQRRRSGAQLHDSGFDECDGPPQQSTKQLG 1290518


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 26.2 bits (56), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 71     PRRMGRINHLRGPSPPPM 88
              P  +G +NH   P PPPM
Sbjct: 204803 PSMIGTVNHEFSPPPPPM 204750



 Score = 25.4 bits (54), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 44     QDVKKRRSYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPSP 85
              +D  +RR+    + +R+     P   PP+ M   +H  GP P
Sbjct: 198320 RDSGQRRATMQQNATRWRAAAPPLQEPPKSMSENHHDSGPQP 198195


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 25.8 bits (55), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 61     DDGRGPPGNPPRRMGRINHLRGPSPPPMAGG 91
              D GRG  G+   R G+ N  R P     AGG
Sbjct: 772582 DAGRGKEGSAEARRGQANRARTPLARAEAGG 772674


>LmjF18_01_20050601_V5.2
             [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 25.8 bits (55), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +2

Query: 55    SSDSRYD--DGRGPPGNPP 71
             SS SR D  DGRGPP  PP
Sbjct: 71231 SSQSRRDSQDGRGPPPQPP 71287


>LmjF10_01_20050601_V5.2
              [~/leish/curated/chr10/LmjF10_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 570864

 Score = 25.8 bits (55), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 48     KRRSYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPSPPPMA 89
              +RRS    SD R+DDG             + H RGP P P++
Sbjct: 171594 RRRSDSARSDVRHDDGS------------LRHRRGPLPAPVS 171683



 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 67     PGNPPRRMGRINH 79
              PG PPRR+G +NH
Sbjct: 554683 PGFPPRRVGALNH 554645



 Score = 25.4 bits (54), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 67     PGNPPRRMGRINH 79
              PG PPRR+G +NH
Sbjct: 547293 PGFPPRRVGALNH 547255


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 25.8 bits (55), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 64     RGPPGNPPRRMGRINHLRGPSPPPMAG 90
              RGP G  P R     H  GPS PP+ G
Sbjct: 624037 RGPKGARPNRR---RHRAGPSSPPLTG 623966


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000017_1.0 # Protein # Selenoprotein M (SelM) # Homo
sapiens # Complete
         (145 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    28   2.1  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    28   3.3  
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    27   4.7  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    27   7.1  

>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 28.1 bits (61), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 117    KAAPDAQVPPEYVWAPAKPPEETSD 141
              +AAPDA+VPP  V  P   P+  +D
Sbjct: 128131 EAAPDAEVPPAAVDGPQHAPQHDND 128057


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 102    REEINALVQELGFYRKAAPDAQVPPE 127
              REEI+ L  ELG+YR+ A ++ V  E
Sbjct: 695299 REEISQLKAELGYYREMAANSLVERE 695222


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 26.9 bits (58), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 59     FVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTREEI 105
              FV +D+P + +++    PG  P+    G   EEL    + E+  E++
Sbjct: 627335 FVKEDVPLFLSMLGDLFPGVSPQ----GAGLEELRAATVDELEAEKL 627463


>LmjF21_01_20050601_V5.2
             [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 26.6 bits (57), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 116   RKAAPDAQVPPEYVWAPAKPPEETS 140
             R+A P AQ PP   W P  PP   S
Sbjct: 40914 RRACPAAQTPPPRRWQPCTPPAPQS 40840


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo
sapiens # Complete
         (590 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    32   1.8  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    32   2.0  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    31   3.4  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    30   4.3  
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    30   4.4  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    30   6.1  
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    30   7.3  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    30   7.4  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    30   7.9  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    29   9.5  

>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +1

Query: 189    RNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGK 248
              R  + AA+PSA +  R   P  P     L   WW  P+  ++      + R   PP +G+
Sbjct: 231898 RGSSTAATPSACWRARRMLPAAPNRSSSLSRVWWR*PTRRAICVAVTRSGRPTTPPTQGR 232077


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 31.6 bits (70), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 1      MGRAR--PGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEA 55
              +G+A+  P  R  PS      PPA  RR   +   + AL  AA +  VR C +   A
Sbjct: 170887 LGKAKQAPAHRRTPSLYTTGHPPA*TRRERETRICIAALGTAAVSLRVRACVQDVRA 170717


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 30.8 bits (68), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 24/51 (47%)
 Frame = +2

Query: 5      RPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEA 55
              R   RGPPS    A PP+PP R A S A        + +AAV    R  EA
Sbjct: 522479 RAQGRGPPS-SLIASPPSPPTRHAASSAEGATSPLLSQSAAVTAAQRQREA 522628


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 30.4 bits (67), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 207    QPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRFYPP 243
              +P LPP   E   P+W  P++ +  +GY+    F+PP
Sbjct: 415255 RPLLPPDEFEQSVPYW--PAQQTHKSGYIYLGLFFPP 415151


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 30.4 bits (67), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -2

Query: 28     ARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDG 72
              A S+++  AL+AAA    +R CARHA  ++A  Q   L+  G +G
Sbjct: 159484 APSMSMTRALVAAACLTRMR-CARHAVPESACAQRPHLRMCGDEG 159353


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 30.0 bits (66), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 9      RGPPSPGPAAQPPAPPR-RRARSLALLGALLAAAAAAA 45
              RG    GPA  P APP+ ++ RS    G  LAAA AA+
Sbjct: 130838 RGRRDHGPARSPSAPPQLQQYRSQQRRGTSLAAAEAAS 130951


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 29.6 bits (65), Expect = 7.3,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 24/85 (28%)
 Frame = +3

Query: 6      PGQRGPPSPGPAA------------------------QPPAPPRRRARSLALLGALLAAA 41
              PG R P SP P A                        +P   PRR  R L        +A
Sbjct: 708129 PGTRHPLSPAPEAVCSVVLT*RLFWRRCGSW*TAWSTRPMTSPRRTGRRLR-------SA 708287

Query: 42     AAAAVRVCARHAEAQAAARQELALK 66
                +  R CAR   A  A+R+ LAL+
Sbjct: 708288 LPSTARTCARWRRASHASRRTLALR 708362



 Score = 29.3 bits (64), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 10     GPPSPGPAAQPPAPPR---RRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60
               P + GPA  PP+PP       R L+ L   L + +AAA  +    A+  AA R
Sbjct: 266661 APDTSGPATLPPSPPSFSITTGRRLSKLPPCLGSCSAAAGTITTTLADTHAAWR 266822


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 29.6 bits (65), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +3

Query: 21     PAPPRRR----ARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELAL 65
              PAP RRR    A  LA L +LL    AAAVRV   H   +   R EL +
Sbjct: 513618 PAPSRRRTVAEAGVLAHLNSLLHGILAAAVRVHFPHLFRRLVRRGELII 513764


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 29.6 bits (65), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +2

Query: 9      RGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAA 59
              R P SPG AA PP+PP            L       +  +C  HA  Q A+
Sbjct: 490265 REPSSPGQAALPPSPP------------LCVCVCVTSPSLCGSHATGQLAS 490381


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 29.3 bits (64), Expect = 9.5,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -1

Query: 12     PSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCA----RHAEAQAAARQELAL 65
              PSP  AA PP    R   S ALL +LL ++AAA   + +    RH    AA+RQ+ A+
Sbjct: 700738 PSPRVAAAPPL-SLRALLSKALLCSLLTSSAAATRMLASTGARRHPVWVAASRQQHAI 700568


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000019_1.0 # Protein # Selenoprotein O (SelO) # Homo
sapiens # Complete
         (669 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    35   0.14 
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    34   0.36 
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    34   0.37 
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    33   0.86 
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    32   1.7  
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    30   6.5  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    30   6.8  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    29   9.6  

>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 35.4 bits (80), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
 Frame = -2

Query: 23     CSPSPAPRSTLSGAAMEPAPRW-----LAGLRFDNR--------ALRALPVEAPPPGPEG 69
              C+P+P PR+  S A+ + APR      L+ L  D          AL + P    P  P G
Sbjct: 230162 CAPTPPPRNDDSVASHQAAPRAVTPPPLSRLS*DTARNTPSA*PALASNPAARTPAAPIG 229983

Query: 70     APSAPRPVPGACFTRVQPTPLRQPRLVALSEPAL 103
              APS  +     C        LR+PR + L+ P L
Sbjct: 229982 APSTEQARSSRCCRARAAHHLRRPRQLPLTHPRL 229881


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 34.3 bits (77), Expect = 0.36,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
 Frame = +3

Query: 6      AALGASLAAARLLPLG--RCSPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRAL--PVE 61
              AA  +S  A    P G  + SP+P P  T  G A EP+       R   RA+ A   P E
Sbjct: 294612 AAHASSPVARHTAPTGHSKTSPTPTPSVTTGGEAAEPS-------RLTERAVTAAMGPRE 294770

Query: 62     APPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLVALSEPALALLGLGAPP--AREAEAE 119
               P  G      A    PG         P   PR    +  A ++ G  +PP  AR+  A 
Sbjct: 294771 FPLCGAPQVAGASGAGPG--------LPPFHPRTPGTTTTAASVPG-SSPPLGARDDNAS 294923

Query: 120    AALFFSGNALL 130
               A  F  NA +
Sbjct: 294924 EAPSFLTNAFV 294956


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 34.3 bits (77), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 45     LAGLRFDNRALRALPVEAPPPGPEGAPSAPRP-VPGACFTRVQPTPLRQPRLVALSEPA 102
              LAGL    R  R  P    PP PEGAP+  R  V GAC   ++P    +PR +  + PA
Sbjct: 364104 LAGLTRGGRRCRCTPDSGTPP-PEGAPTRGRSGVQGACRGELRPGETGEPRRLCATPPA 363931



 Score = 29.6 bits (65), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 38     MEPAPRWLAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPG 79
              ++P  RW  G    +R  +A+P +  PP P  A  + RPVP 
Sbjct: 870913 IQPPSRWTPGSPAGSRRKQAVPQKTTPPIPMSAWHSWRPVPA 871038



 Score = 29.6 bits (65), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 20     LGRCSPSPAPRSTLSGAAMEPAPRWLAG 47
              LGR  PSP+P   L GA  EP PR +A 
Sbjct: 147204 LGRGKPSPSPAPPLFGAGHEP*PRCVAA 147121


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 32.7 bits (73), Expect = 0.86,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
 Frame = +2

Query: 1      MAVYRAALGASLAAARLLPLGRCS-PSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRALP 59
              + + +A  G  LA     P  RC+ P+P   S    A+ E  P  L G R+   + R   
Sbjct: 196658 LGLLKAYQGRPLAPPSSAPRPRCALPAPPQSSPWLLAS*EVPPPSLLGTRYGTLSRRLSR 196837

Query: 60     VEAPPPGP----------EGAPSAPRPVPGACFTRVQPTPLRQPRLVALSEPALAL--LG 107
               +APP  P          +  P+AP PV    F  +Q      P LV     AL    +G
Sbjct: 196838 PDAPPTSPRPCAASIR*YKPGPAAPLPVGSTDFPALQCAFGETPPLVGCEFAALHA*PVG 197017

Query: 108    LGAPPAR 114
                APP +
Sbjct: 197018 HDAPPPK 197038


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 32.0 bits (71), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 31/79 (39%)
 Frame = +2

Query: 63      PPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLVALSEPALALLGLGAPPAREAEAEAAL 122
               PPP P  AP+APRP+P +C         R     +LS   L +                 
Sbjct: 1162931 PPPRPVSAPTAPRPLP-SCMDTAHEETERH----SLSLSTLLVF--------------VF 1163053

Query: 123     FFSGNALLPGAEPAAHCYC 141
                F+G   +P    AA CYC
Sbjct: 1163054 LFAGAPHIPWRVSAAICYC 1163110


>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 30.0 bits (66), Expect = 6.5,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = -2

Query: 12     LAAARLLPLGRC-SPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRALPVE------APP 64
              LA+ R  P   C +PSPAPR  +S     PAP    G +   +A R +P        A  
Sbjct: 501452 LASRRPPPTATCHAPSPAPRQRMS-----PAPLRTPGAKTRQQAARHIPQHCRWARSARH 501288

Query: 65     PGPEGAPSAPRPVPGACFTRVQPTPLRQPR 94
              P P  A + PRP   A   R Q    R  R
Sbjct: 501287 PRPATAVARPRPPTSANAPRRQACAARPNR 501198


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.0 bits (66), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = +1

Query: 521     GTRAGIARELERVEQQSRLEQLSAAELQSRNQGHWADWLQAYRARLDKDLEGAGDAAAWQ 580
               G R  + + ++ ++ +SR   +SA        G   + +Q  +A+L+         A WQ
Sbjct: 1858132 GERKSVEKSVKVIKMRSRAADVSATLAWKNPTGLTPEEMQTSQAKLE---------AIWQ 1858284

Query: 581     AEHVRVMHANNPKYVLRNYI 600
               AEHV+ + A   K  L  YI
Sbjct: 1858285 AEHVKHLRA-TAKNNLEAYI 1858341


>LmjF29_01_20050601_V5.2
             [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 29.3 bits (64), Expect = 9.6,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +1

Query: 19    PLGRCSPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRA--LP---VEAPPPGPEGAPSA 73
             PL R  P  +P    S A  +P+   L G  +D R+  A  LP   V      P GAP+ 
Sbjct: 84589 PLCRSPPGASPPGWRSSAPHQPSA--LRGAGWDTRSSHAGTLPIRWVAQTCSQPRGAPTP 84762

Query: 74    PRPVPG 79
             P P PG
Sbjct: 84763 PHPGPG 84780


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000020_1.0 # Protein # Selenoprotein P (SelP) # Homo
sapiens # Complete
         (381 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    32   1.1  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    32   1.2  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    30   4.1  
LmjF01_01_20050601_V5.2 [~/leish/curated/chr1/LmjF01_01_20050601...    29   4.7  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    29   5.5  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    28   8.3  

>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 31.6 bits (70), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 199    ETPSPH-YHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPP 241
              +TP  H Y H H         G S+  E +QP  P AP +  PP
Sbjct: 681899 DTPHTHKYTHTHASARRIDIFGPSQYGEGEQPHPPPAPVNAQPP 681768



 Score = 28.9 bits (63), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 273    QKKLCRKRCINQLLCKLPTDSELAPRSXCCHC 304
              Q+   + RC+ QLL  LPT SE+  RS  C C
Sbjct: 655507 QRSSQQSRCM*QLLDLLPTSSEVGGRSDGCRC 655412


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 31.6 bits (70), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 241    PGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKLCRKRCI 282
              P  HHH +HK + ++    N+ +  S +LQ  ++ +CR  C+
Sbjct: 896391 PNRHHHSRHKRKTQEQAQGNKKIRHSRNLQHPRRHVCRCSCV 896266



 Score = 29.3 bits (64), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 278    RKRCINQLLCKLPTDSELAPRSXCCHCRHLIFEKTGSAI 316
              R+R   + +C+     E   R   CH RHL FE+ G ++
Sbjct: 942196 RRRTTKRFICEEAVHWEKTGRESSCHHRHLRFEEGGGSL 942312



 Score = 28.5 bits (62), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
 Frame = +2

Query: 229     PGAPNAPTHPAPPG-------------LHHHHKHKGQHRQGHP 258
               PG+P    HPAP G             LHH H H+    +G P
Sbjct: 1564481 PGSPATRPHPAPKGARREREDGGCVVLLHHQHGHRRNKLRGSP 1564609


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 29.6 bits (65), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 230     GAPNAPTHPAPPGLHHHHKHK 250
               GAP+AP HP     HH H+H+
Sbjct: 1249881 GAPSAPQHPRAQIQHHRHRHR 1249943


>LmjF01_01_20050601_V5.2
              [~/leish/curated/chr1/LmjF01_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 268984

 Score = 29.3 bits (64), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 227    QQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDM 263
              ++ GAP    H        H   KG+HRQ H   R +
Sbjct: 153393 RRAGAPREAHHRCGGAAQQHQPEKGEHRQAHSRRRRL 153503


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 29.3 bits (64), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -1

Query: 217    HLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENRDMPASEDLQDLQKKL 276
              HL + E +E   P  P    + APP L    K  GQ   G P N      + L+++Q++ 
Sbjct: 471982 HLVTVEGNEPLVPPLPPMSAY-APPQLSSTEKLLGQVILGRPHN----FGKSLEEIQREA 471818

Query: 277    CRKRCI 282
               R+RC+
Sbjct: 471817 VRQRCL 471800


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 28.5 bits (62), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 222     ELSENQQPGAPNAPTHPAPPGLHHHHKHKG 251
               E   NQ+ GA   P H A  G  HHHK  G
Sbjct: 2139830 ERRTNQRRGACAVPRHRAEQGSGHHHKQSG 2139741


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    48   2e-06
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    30   0.46 
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    29   0.85 
LmjF03_01_20050601_V5.2 [~/leish/curated/chr3/LmjF03_01_20050601...    29   0.85 
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    27   3.8  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    26   5.0  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    26   6.1  
LmjF12_01_20050601_V5.2 [~/leish/curated/chr12/LmjF12_01_2005060...    25   7.5  
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    25   8.1  
LmjF08_01_20050601_V5.2 [~/leish/curated/chr8/LmjF08_01_20050601...    25   8.7  

>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
 Frame = +3

Query: 9       GEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK 68
               G  + + F+ G YVCA C   L+ S  K+A    WP F + I    V ++P+ +    ++
Sbjct: 1031808 GGKYDDVFDEGEYVCAGCKTPLYLSSMKFACGCGWPGFYDCI-PKRVREQPDRD-GRRVE 1031981

Query: 69      VSCGKCGNGLGHEFLNDGPK--PGQSRFXIFSSSLKFVP 105
               + C  C + LGH F  +G +  P   R  + S+S+ F P
Sbjct: 1031982 IVCNVCNSHLGHVFRGEGFRNPPPNERHCVNSTSIIFRP 1032098


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 29.6 bits (65), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 23     CAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKR 58
              C  C  +LF SRS+Y HS+ WP   +T  A + A R
Sbjct: 285409 CRWCLPQLFWSRSRYLHSALWPP-QQTPRAATAAGR 285513


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 28.9 bits (63), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 34     RSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKC 74
              RS+  H    P +  TIH+   A+  EHN  +     CG+C
Sbjct: 510657 RSREGHRDEQPPWRNTIHSYRAAQEAEHNDGQ----RCGRC 510547


>LmjF03_01_20050601_V5.2
             [~/leish/curated/chr3/LmjF03_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 384518

 Score = 28.9 bits (63), Expect = 0.85,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 69    VSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKG 107
             V+CG+ G   G     +   PG+ R  + SS L+FV  G
Sbjct: 18555 VTCGRRGIACGRTIWLNSLLPGRRRRKLLSSVLRFVSDG 18439


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 50     IHADSVAKRPEHNRSEALKVS 70
              +HA S+A RP+H+R++  +++
Sbjct: 130835 LHASSIATRPQHDRNDHRRIT 130897


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 26.2 bits (56), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 49     TIHADSVAKRPEHNRSEALKVS 70
              TIH   + ++ +HNR EAL V+
Sbjct: 720493 TIHCQELWRQRQHNRQEALHVA 720558


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 25.8 bits (55), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -1

Query: 67     LKVSCGKCGNGLGHEFLND-GPKPGQSRFXIFSSSLKFVPKGKETSASQGH 116
              L+  CG CG GL H   N  G K GQS                E +A QGH
Sbjct: 444983 LRRRCGSCGRGLLHGVANVLGFKQGQS----------------EATAQQGH 444879


>LmjF12_01_20050601_V5.2
              [~/leish/curated/chr12/LmjF12_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 675347

 Score = 25.4 bits (54), Expect = 7.5,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -1

Query: 6      FFGGEVFQNHFEPGVYVCAK-CGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRS 64
              FF  E          +VC + CG  L  S S+   S P+P + ET HA       E  R 
Sbjct: 216959 FFRAETLSVSLSVSGHVCDRVCGTVLVRSLSRPLPSLPFPFYPET-HAQPSGGDDEVRRG 216783

Query: 65     EALKVSC 71
               ++  +C
Sbjct: 216782 ASITRAC 216762


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 75     GNGLGHEFLNDGPKPGQSRFXIFSSSLKFV--PKGKETSASQG 115
              G+G GH+ + DGP     R  +   +++ V   +G+E    +G
Sbjct: 142283 GDGTGHQVVQDGPPDVVGRVFVKGVAVRVVHRAEGRENEGVEG 142155


>LmjF08_01_20050601_V5.2
              [~/leish/curated/chr8/LmjF08_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 574972

 Score = 25.4 bits (54), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 37     YAHSSPWPAFTETIHADSVAKRPEHNR 63
              YA  +P+ A    +HAD  A RP+  R
Sbjct: 194915 YARHAPYSASAWRLHADDAALRPDAER 194995



 Score = 25.4 bits (54), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 47     TETIHADSVAKRPEHNRSEALKVSCGKCGNG 77
              + T  A   A  P+H R+ A + S   CGNG
Sbjct: 540719 SSTFMAVGAAAVPQHVRTSAERTSTQHCGNG 540627


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    76   1e-14
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    28   5.2  
LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...    28   5.2  
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    27   6.9  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    27   8.5  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    27   9.9  

>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
 Frame = +3

Query: 66      LAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGT 125
               ++  EW++ LT +++++ REKGT+P   G Y +  + G Y C  C +PL+ S  K+  G 
Sbjct: 1031730 MSDEEWRRILTAQEYHILREKGTDP-VGGKYDDVFDEGEYVCAGCKTPLYLSSMKFACGC 1031906

Query: 126     GWPSFSEAHGTSGSDESHTGILRRL--DTSLGSARTEVVCKQCEAHLGHVFPD----GPG 179
               GWP F +             I +R+         R E+VC  C +HLGHVF       P 
Sbjct: 1031907 GWPGFYDC------------IPKRVREQPDRDGRRVEIVCNVCNSHLGHVFRGEGFRNPP 1032050

Query: 180     PNGQRFXINSVALKFKPRKH 199
               PN +R  +NS ++ F+P + 
Sbjct: 1032051 PN-ERHCVNSTSIIFRPTQQ 1032107


>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 27.7 bits (60), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 11      QRAAPERAARLLWLLRGLTLGTAPRRAVRGQAGGGGP 47
               +R   +R A LL++L       A RRAVR  A GGGP
Sbjct: 1631720 ERRVRQRVAVLLFVL-------AVRRAVREHAPGGGP 1631631


>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score = 27.7 bits (60), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 20     RLLWLLRGL-TLGTAPRRAVRGQAGG 44
              RLLW LRG    GTA RR V    GG
Sbjct: 294723 RLLWQLRGARRQGTAKRRGVVAMGGG 294646


>LmjF20_01_20050601_V5.2
             [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 27.3 bits (59), Expect = 6.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 60    ATCELPLAKSEWQKKLTPEQFYVTR 84
             A C +PLA  + ++K+T + +Y+TR
Sbjct: 28226 APCGIPLASLQLRRKITSQLWYLTR 28152



 Score = 26.9 bits (58), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 14/55 (25%)
 Frame = -2

Query: 107    CVCCDSPLFSSEKKYCSGT--------------GWPSFSEAHGTSGSDESHTGIL 147
              C+ C   L +S+   CSG               GWP  + +H TSG+ + H   L
Sbjct: 674018 CLRCGGALHASQCGVCSGAEACRPALGAHGGAVGWPGAARSHSTSGAHQGHAAAL 673854


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 27.3 bits (59), Expect = 8.5,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 108    VCCDSPLFSSEKKYCSGTGWPSFSEAHG-TSGSDESHT-GILRRLDTSLGSARTEVVCKQ 165
              +CC S L S+ +  C+ T +    +AH  TS   +  T GI  R ++++  +R +  C  
Sbjct: 395309 LCCCSQLLSAWRVQCATTAYSPEPQAHAHTSRRAKGRTEGIHLRHNSAISPSRHQSPCST 395488

Query: 166    CEAHLGHV 173
                A L  V
Sbjct: 395489 LSAVLRRV 395512


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 26.9 bits (58), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 30     LGTAPRRAVRGQAGGGGPGTGPGLGEA-GSLATCELPLAKSEWQ-KKLTPEQFYVTREKG 87
              L  +P    RG   GG  G    L     ++A C LPLA+ EW  +   P  F      G
Sbjct: 327325 LALSPDARARGIEDGGCGGVHAVLSVLWRTVACCRLPLARLEWALRSAQPSHFSCL---G 327495

Query: 88     TEPPFSGIYL 97
                PP S ++L
Sbjct: 327496 FPPPPSSLFL 327525


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    82   3e-16
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    33   0.16 
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    32   0.33 
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    32   0.38 
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    31   0.54 
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    31   0.59 
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    31   0.59 
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    30   0.82 
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    29   1.6  
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    29   1.8  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    29   2.4  
LmjF08_01_20050601_V5.2 [~/leish/curated/chr8/LmjF08_01_20050601...    29   2.6  
LmjF10_01_20050601_V5.2 [~/leish/curated/chr10/LmjF10_01_2005060...    28   3.1  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    28   3.3  
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    28   3.4  
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    28   3.6  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    28   5.1  
LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    28   5.3  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    27   6.4  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    27   7.6  
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    27   7.8  

>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/130 (39%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
 Frame = +3

Query: 46      SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
               S +E R+ LT  +YH+ +EKGT+    G+Y    D G Y C  C TPL+ S  KF  G G
Sbjct: 1031733 SDEEWRRILTAQEYHILREKGTDPV-GGKYDDVFDEGEYVCAGCKTPLYLSSMKFACGCG 1031909

Query: 106     WPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF-DDGPR--PTGKRYXINSA 162
               WP F+D I        D       RVE  C+ C +HLGH+F  +G R  P  +R+ +NS 
Sbjct: 1031910 WPGFYDCIPKRVREQPDRDG---RRVEIVCNVCNSHLGHVFRGEGFRNPPPNERHCVNST 1032080

Query: 163     ALSFTPADSS 172
               ++ F P   S
Sbjct: 1032081 SIIFRPTQQS 1032110



 Score = 28.5 bits (62), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 128    MHRVETSCSQCGAHLGHIFDDGPRPT 153
              +HRV   C++ G  L H+ +DG R T
Sbjct: 453446 IHRVRLFCTRAGGALVHLLNDGVRHT 453369


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 32.7 bits (73), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 7      LPRPLSLCLSLCLCLCLAAAL 27
              LPRPL  C+ +C+C+C++ +L
Sbjct: 774133 LPRPLGACVYVCMCVCMSVSL 774071



 Score = 29.3 bits (64), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 9       RPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRL 54
               R +S+C S C CLC AA        S +DK +C  +  +QE  +RL
Sbjct: 1197087 RCVSVCESKCPCLCFAAR-------SLQDKVDCAGIEGKQEGLRRL 1196971



 Score = 28.9 bits (63), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -2

Query: 9       RPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 68
               R +SLCL +CLC+ ++  +     G CR K    V    +++ +  + L    TQ++GT 
Sbjct: 1197107 RAVSLCLGVCLCVRVSVHVCVLLRGVCRTKSTVLVSKENKKV*EDYS*L----TQKEGTW 1196940

Query: 69      SA 70
               +A
Sbjct: 1196939 NA 1196934



 Score = 26.9 bits (58), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 2      SPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGS---CRDKKNCK 42
              +PR T  R  S C       CL AAL S++SG+    ++KKN K
Sbjct: 705875 APRETGRRHRSCCTQWVPACCLRAALKSSESGTRKNAKEKKNVK 705744


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 31.6 bits (70), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -3

Query: 3       PRRTLPRPLSLCLSLCLCLCLAA 25
               PRRTL +PL +C   C+CLC++A
Sbjct: 1125059 PRRTLSQPLRVC--ECVCLCVSA 1124997



 Score = 31.2 bits (69), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -3

Query: 6       TLPRPLSLCLS------LCLCLCLAAALGSAQSGSCRDKKNCKVVF 45
               T P  LSLC S      LC+C+C+ + L +  +G  R ++ C +VF
Sbjct: 1105280 TRPPSLSLCFSRLFSSWLCVCICVFSLLLTMFTGVRRTRRACALVF 1105143



 Score = 29.6 bits (65), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 13     LCLSLCLCLCLAAALGSAQ 31
              LC+S+CLCLC+  AL + Q
Sbjct: 436385 LCVSVCLCLCVKVALKAQQ 436441



 Score = 29.3 bits (64), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 5      RTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRL 54
              R +PR   LCLSLC C+C+          SC    +  V F   E+R+ L
Sbjct: 732241 RVVPRQSCLCLSLCACVCVRL--------SCSCFAHFNVFFFHVEVRRLL 732116



 Score = 27.7 bits (60), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 8      PRPLSLCLSLCLCLCLA 24
              P PL  C+S+C+C+CL+
Sbjct: 956609 PPPLFWCVSVCMCMCLS 956559



 Score = 27.7 bits (60), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 8      PRPLSLCLSLCLCLCL 23
              P P SLC+SL LC+C+
Sbjct: 152088 PSPPSLCVSLSLCVCV 152041



 Score = 27.7 bits (60), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 5      RTLPRPLSLCLSLCLCLCLA 24
              RT   PLSL LS+C+C+CL 
Sbjct: 402601 RTEYLPLSLSLSVCVCVCLG 402660



 Score = 27.7 bits (60), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 10     PLSLCLSLCLCLCLA 24
              P SLC   CLC+CLA
Sbjct: 566712 PSSLCFFFCLCICLA 566756


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 31.6 bits (70), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
 Frame = +1

Query: 14      CLSLCLCLCLAAALGSAQSGS-------CRDKKNCK------VVFSQQELRKRLTPLQYH 60
               C+SLC+C+C+  ALGSA   S       C   +          V+S    R+R  PL+Y+
Sbjct: 2487511 CVSLCVCVCMVRALGSALMYSPVIL*RKCMTGRGSSFSLLLFFVYSCAGARRRGAPLKYY 2487690

Query: 61      VTQEKGTESAFEGEYTHHKDPGIYKCVVC 89
                 + +     +       +D G+  CV C
Sbjct: 2487691 AAE*RYKMPKWV------RDEGVGVCVPC 2487759



 Score = 30.0 bits (66), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 2       SPRRTLPRPLSLCLSLCLCLC-LAAALGSAQSGSCRDK 38
               +PR  L R  +LC+S+    C L  ++G  Q+GSC D+
Sbjct: 2420038 TPRHVLLRRAALCMSVVDSTCMLGPSVGGGQAGSCWDR 2419925



 Score = 29.6 bits (65), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 2       SPRRTLPRPLSLCLSLCLCLC-LAAALGSAQSGSCRDK 38
               +PR  L R  +LC+S+    C L  ++G  Q+GSC D+
Sbjct: 2423309 TPRHVLLRRAALCMSVVDSTCMLGPSVGGGQAGSCWDR 2423196



 Score = 29.3 bits (64), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 471325 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 471423



 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 7      LPRPLSLCLSLCLCLCLAAALGSAQSGS 34
              L   LSL LS+C+C+CL+  L + Q  S
Sbjct: 620651 LDMALSLSLSVCVCVCLSVYLRAEQGAS 620734



 Score = 27.3 bits (59), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 149    GPRPTGKRYXINSAALSFTPADSSGTAEGGSGVASPAQADK 189
              G RP  +RY  + +A       + G  + GSGV + A  D+
Sbjct: 753458 GCRPQQQRYQASRSATDGASMQADGAEQSGSGVRAEAAEDR 753336


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 31.2 bits (69), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 3      PRRTLPR-PLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQY 59
              P  +LPR P+S  LSLC+C+C++AA         R      V+ +Q  +R    PL +
Sbjct: 111025 PPLSLPRRPISRSLSLCVCVCVSAATLPPPLPLDRPPLPVVVLPAQSHVRVHRLPLPH 110852


>LmjF34_01_20050601_V5.2
             [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 30.8 bits (68), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 14    CLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPL-QYHVTQEKGTESAFE 72
             C+S+CLC+C+ A  G  +S         +VVF+  E R     L + HV  + G + A E
Sbjct: 66707 CMSVCLCVCVRARRGLMESSVTSLMPTVRVVFT--EFR*CFVLLARVHVCGQVGNDGAAE 66880

Query: 73    G 73
             G
Sbjct: 66881 G 66883



 Score = 30.4 bits (67), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 8      PRPLSLCLSLCLCLC 22
              P PLS C+SLCLCLC
Sbjct: 224764 PSPLSSCVSLCLCLC 224808



 Score = 27.7 bits (60), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 3       PRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKR 53
               P RTLP  L  C SLCL    + AL ++++G  R  + C+ +  + E+  R
Sbjct: 1077653 PHRTLPLQLVECYSLCL----SCALCASRAGK-RGARTCRPLVVESEVSTR 1077516



 Score = 27.7 bits (60), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 4       RRTLPRPLSLCLSLCLCLCLA 24
               R   PR LS+ LSLC+CL LA
Sbjct: 1752580 RHMRPRRLSVSLSLCICLWLA 1752518



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 864590 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 864492



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 857058 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 856960



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 849518 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 849420



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 841971 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 841873



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 834436 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 834338



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 819348 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 819250



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 812065 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 811967



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 796984 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 796886



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 789431 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 789333



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 781892 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 781794



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 774359 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 774261



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 766817 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 766719



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 751739 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 751641



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 744210 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 744112



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 736610 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 736512



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 729069 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 728971



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 721804 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 721706



 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 714250 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 714152



 Score = 27.3 bits (59), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 826888 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 826790



 Score = 27.3 bits (59), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 804526 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 804428



 Score = 27.3 bits (59), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 759268 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 759170



 Score = 27.3 bits (59), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 13     LCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFS 46
              +C+ +C CLC+ A  GSA +  C D  +C  + S
Sbjct: 706712 VCMCVCTCLCVRAPSGSA-AAFCADASSCAPLLS 706614


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 30.8 bits (68), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 3      PRRTLPRPLSLCLSLCLCLCLAAALGSAQS 32
              P+   P PLSLC ++C C+ L  A+G  +S
Sbjct: 726155 PQAYFPPPLSLCCAICACIGLRCAVGPRKS 726066



 Score = 27.3 bits (59), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
 Frame = -2

Query: 7     LPRPLSLCLSLCLCLCLA---------AALGSAQSGSCRDKKNC 41
             LP P+ + LS CLC C              G A SGS R   NC
Sbjct: 75463 LPPPVGMPLSFCLCRCAVNRADQTVRRGQGGWANSGSQRRMPNC 75332



 Score = 26.9 bits (58), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 5       RTLPRPLSLCLSLCLCLCLAAA 26
               R+L  P  L LSLC+C+C  AA
Sbjct: 1229977 RSLDSPEKLSLSLCVCVCARAA 1230042


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.4 bits (67), Expect = 0.82,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
 Frame = -3

Query: 2      SPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGS---------CRDKKNCKVVFSQQELRK 52
              S RR   R L++   L     +A AL  A + +         CR   +C +  + Q +  
Sbjct: 312953 SGRRRFNRVLTVVALLFTHAVVAIALTGAAATTRSVPVSFHGCR--CSCGLFVAAQYIT- 312783

Query: 53     RLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGW 106
                T L +H  Q++  ++  +GE    + P +  CVV    +  + T  +SG GW
Sbjct: 312782 --TSLLHHQWQQRTAQTTQKGEQLRRQPPHVLLCVVQLRNVLPNHTTNESGMGW 312627


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 29.3 bits (64), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 7      LPRPLSLCLSLCLCLCLAA 25
              +PR LS+CLSL LC+C+ A
Sbjct: 347733 VPRHLSVCLSLSLCVCVCA 347677


>LmjF15_01_20050601_V5.2
             [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 29.3 bits (64), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 9     RPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKV 43
             RPL L LSLC+C+C+     +  S + R   + +V
Sbjct: 56648 RPLRLSLSLCVCVCVGGCASTFTSSTTRAHAHAEV 56544



 Score = 27.7 bits (60), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +2

Query: 7      LPRPLSL-CLSLCLCLCLAA 25
              +P PL + C SLC+CLC+AA
Sbjct: 280466 VPHPLPVACRSLCVCLCVAA 280525


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 28.9 bits (63), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 11     LSLCLSLCLCLCLAAALGSA 30
              L LCLS+CLC+C+ A + SA
Sbjct: 233527 LFLCLSVCLCVCVYACMHSA 233468


>LmjF08_01_20050601_V5.2
              [~/leish/curated/chr8/LmjF08_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 574972

 Score = 28.9 bits (63), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 7      LPRPLSLCLSLCLCLCLAAA 26
               P+ LSL LSLC+C+CL  +
Sbjct: 158625 FPKRLSLSLSLCVCVCLCVS 158684


>LmjF10_01_20050601_V5.2
              [~/leish/curated/chr10/LmjF10_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 570864

 Score = 28.5 bits (62), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 14     CLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAF 71
              C S C CL ++AA  S+  GS    +     FS+  +R RL   + H        S F
Sbjct: 101171 CFSFCCCLFVSAAPTSSAKGSISLTRPHTPHFSRFTVRFRLNGFELHTLSSTAHHSLF 101344


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 28.5 bits (62), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 8      PRPLSLCLSLCLCLCLAA 25
              PR +SL LSLC+C+C+ A
Sbjct: 121929 PRSVSLSLSLCVCVCVCA 121876



 Score = 27.3 bits (59), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 5      RTLPRPLSLCLSLCLC 20
              R  P P+ LCLSLC+C
Sbjct: 188546 RRAPTPIRLCLSLCVC 188499



 Score = 26.9 bits (58), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
 Frame = -1

Query: 1     MSPRRTLPRPLSLCLSL--------------CLCLCLAAALGSAQS-GSCRDKK 39
             M P R L RPL  C +               C+C+CL+    S Q  G+ R+K+
Sbjct: 25857 MCPARLLVRPLVRCATSYTVVRV*W*W*EPSCMCMCLSVCAESLQGMGNTREKR 25696


>LmjF06_01_20050601_V5.2
             [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 28.5 bits (62), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 8     PRPLSLCLSLCLCLCLAAALGSAQSGSCRDKK 39
             P P SLC+  C+C+C+ A   ++   S +++K
Sbjct: 90044 PSPPSLCMRACVCVCVRARACASGRTSAKEEK 90139


>LmjF04_01_20050601_V5.2
             [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 28.1 bits (61), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 8     PRPLSLCLSLCLCLCLAAA 26
             P PL L LSLC+C+C+  A
Sbjct: 70282 PSPLFLSLSLCVCVCVTCA 70338


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 27.7 bits (60), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 12     SLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKR 53
              S+CL +C+ +C + +LG  +  S R    C  VFS+  L +R
Sbjct: 424974 SVCLLVCVRVCFSVSLGVHKEASIRSFHCCFPVFSRCLLCRR 425099



 Score = 26.9 bits (58), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 5      RTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHV 61
              R L R L L L +C+C+CL  A   A     + +++C V       R  + PL + V
Sbjct: 387844 RVLSRSLPL-LRVCVCVCLPQATACASLMYIKTRRSCAV-------RCDMLPLHFSV 387990



 Score = 26.9 bits (58), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 124    FSYGMHRVETSCSQCGAHLGHIFDDGPRPTG 154
              +++   R  T C  C  H+G I    PR +G
Sbjct: 399824 YAHAQKRQRTPCKACSRHVGLILRSAPRASG 399916


>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 27.7 bits (60), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 11     LSLCLSLCLCLC 22
              LSLCLSLC+C+C
Sbjct: 241383 LSLCLSLCVCVC 241418


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 27.3 bits (59), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 9      RPLSLCLSLCLCLCLAAALGSAQ 31
              R  SL LS+C+C+CL +A  + +
Sbjct: 268920 RSCSLILSVCVCVCLTSAAATGR 268988



 Score = 27.3 bits (59), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 1      MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNC 41
              +SP++   +    C+ +CLCLC A  +GS +    +  + C
Sbjct: 379309 LSPQQREKKREDECVGVCLCLCQAQHIGSERDMPSKAVRKC 379431


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 27.3 bits (59), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 7      LPRPLSLCLSLCLCLCL 23
              LPRP+ L  S C+CLC+
Sbjct: 251564 LPRPVRLAFSGCVCLCV 251514


>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 27.3 bits (59), Expect = 7.8,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
 Frame = +1

Query: 10     PLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTES 69
              P  + L+LC C+CL A L +A+     D        S++E + R  P     +Q   T S
Sbjct: 450874 PRCVHLTLCACVCLCARL*NAEEDLGGDG-------SEEEGKGRRGPRMGVRSQVHATPS 451032

Query: 70     AFEGEYTHHKDP---GIYKCVVCGTPLFKSETKFDSGSGW 106
               F   ++    P   G +  V C  P+   ++      GW
Sbjct: 451033 VFRRRWSPSSQPSAKGRFAFVCCVQPIRVPDSAEPPLRGW 451152


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000024_1.0 # Protein # Selenoprotein S (SelS) # Homo
sapiens # Complete
         (189 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    32   0.37 
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    32   0.38 
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    30   0.77 
LmjF16_01_20050601_V5.2 [~/leish/curated/chr16/LmjF16_01_2005060...    30   1.3  
LmjF01_01_20050601_V5.2 [~/leish/curated/chr1/LmjF01_01_20050601...    29   2.7  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    28   3.7  
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    28   4.0  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    28   4.7  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    28   6.0  
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    27   8.3  

>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 31.6 bits (70), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 34      GWYIVFSCILLYVVFQKLSARLRALRQ-RQLDRAAAAVEPDVVVKRQEA 81
               GWY + S I+       LSA +RA R    +D  A A+ P    KR EA
Sbjct: 1026104 GWYSIHSIIVRTTALVALSAEMRASRHISHMDSIAVAISPS---KRAEA 1025967



 Score = 26.9 bits (58), Expect = 7.9,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 42      ILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHK 101
               + L+V  + LS R+R+  +RQLDRA    E            A        +NA +++ +
Sbjct: 1461593 LFLFVYERGLSDRIRSSGKRQLDRADCRKETRQTTGIVRPTPAC-------MNASLDRKE 1461751

Query: 102     EKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKKPQEEDSPGP-----STSSVLKRKSDRK 156
                K + L   + R+K               N +  Q    P P     +++ V +R + + 
Sbjct: 1461752 RKQENLHRHRIREK---------------NDRVSQSCHPPPPLCCIITSARVRRRSAAQL 1461886

Query: 157     PLRG 160
               PLRG
Sbjct: 1461887 PLRG 1461898


>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 31.6 bits (70), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = -3

Query: 11      RPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSARL-RALRQRQLDRAAAA 69
               R ALE    R L    G++ A++   +   C+ ++    +++ +    LR+R      + 
Sbjct: 1090208 REALEGVARRMLQDMAGAVPASFHEKLPQLCVDVHAATTEMAQQYYDELRRRYYITPTSY 1090029

Query: 70      VEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEM 118
               +E    ++  +AL  +R    E   AQVE   EK+++ EE   + K+E+
Sbjct: 1090028 LE---FIETYKALLQSRRSRVEAQLAQVENGTEKMRETEETITKMKVEI 1089891


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 30.4 bits (67), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 83     AAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWDSMQEGKSYKGNAKK 134
              AAA+  + +EL+A  EKHK  L QL+    R+  ++    QE    +G A +
Sbjct: 408584 AAAQTALTDELDALKEKHKAALAQLQTYHAREAAQLLKQQQEESHTRGTAAE 408429


>LmjF16_01_20050601_V5.2
              [~/leish/curated/chr16/LmjF16_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 714659

 Score = 29.6 bits (65), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -3

Query: 116    IEMWDSMQEGKSYKGNAKKPQEEDSPGPSTSSVLKRKSDRKPLRGGGYNP 165
              +++W +      + GN++K  +E++    T S   R + R+ +R   Y+P
Sbjct: 464073 LQLWSATTAPSDFGGNSEKGTDENASEAETMSQGGRDASRREVRASSYDP 463924


>LmjF01_01_20050601_V5.2
              [~/leish/curated/chr1/LmjF01_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 268984

 Score = 28.9 bits (63), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 153    SDRKPLRGGGYNPLSGEGGGACSWRPG 179
              + R PLR G      G+GGG   WRPG
Sbjct: 159366 ATRPPLRLGAVFVRRGDGGGRLCWRPG 159286


>LmjF19_01_20050601_V5.2
             [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 28.1 bits (61), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 27    GSLLATYGWYIVFSCILLYVVFQKLSARLR 56
             G LLAT   +IVF C+ L  + + +SA++R
Sbjct: 21879 GLLLATLSLHIVFCCLFLMAL*RVISAQVR 21968


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 28.1 bits (61), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = -1

Query: 50     KLSARLRALRQRQLDRAAA----AVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLK 105
              +L+ + RA+R++++ RA+     A    ++V R E       ++ EEL  +     +++K
Sbjct: 286255 RLNRKARAIREKKMRRASKSLGEAAPTGLLVGRDE-------EVDEELGYKEAPKTKEVK 286097

Query: 106    QLEEEKRRQKIEMWD 120
                +E +R +K+  WD
Sbjct: 286096 SRQELQRERKMAKWD 286052


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 27.7 bits (60), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 164    NPLSGEGGGACSWRPGR-RGPSSGG 187
              +P SG GGGAC W P R R  +SGG
Sbjct: 818454 HPESGCGGGACHW*PMRDRNTASGG 818528


>LmjF25_01_20050601_V5.2
             [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 27.7 bits (60), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 157   PLRGGGYNPLSGEGGGACSWRPGRRGPSSG 186
             PLR  G+ P     G ACSWR G  G S+G
Sbjct: 75454 PLRLPGWAPRPS--GSACSWRAGEVGSSNG 75537


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 26.9 bits (58), Expect = 8.3,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 168    GEGGGACSWRPGRRGPSSGGXG 189
              G G G C+ RP  RGP++G  G
Sbjct: 577135 GGGAGNCACRPHARGPTAGTGG 577200


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
         (195 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    52   3e-07

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
 Frame = +3

Query: 27     PSKRLKMQYATGPLLKFQICVSXGYRRVFEEYMRVISQRYP---DIRIEGENYLPQPIYR 83
              P+++L   +A    L+   C   GY + FE+  + +    P   ++RI G  Y P P  R
Sbjct: 510303 PNRQLAAVHA----LEVLYCTG*GYAKYFEDMKQQLQHTLPNAQEVRIVGGTY-PTPPAR 510467

Query: 84     HIAS------FLSVFKLVLIGLIIVGKDP--FAFFGMQAPSIWQWGQENKVYACMMVFFL 135
               +A+      FL+   + L G  +V   P    F   Q   +   G            FL
Sbjct: 510468 ALAAKVCSTAFLASLGVALAGQQLVFLPPTVLNFIAQQRGMLIGAG------------FL 510611

Query: 136    SNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDS 189
               NMI      TGAFE++L+   ++SKL++G +P++ ++ +I+  +  L+ + DS
Sbjct: 510612 LNMIGGALGQTGAFEVSLDGELIFSKLQAGAVPAVAEIRRIVLQKTLLDKYGDS 510773



 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 84    HIASFLSVFKLVLIGLIIVGKDPF 107
             H+  FLS+F LVL+GL++  +  F
Sbjct: 89770 HLPLFLSIFWLVLLGLVLCSRGFF 89841


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo
sapiens # Complete
         (229 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    30   1.0  

>LmjF18_01_20050601_V5.2
             [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 30.4 bits (67), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -1

Query: 7     PSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKA 66
             P+FF M +W   A A+ +  L ++ A   VFL+    A        +  +  K+P     
Sbjct: 44207 PTFFEMHVWHSRASAVRSIRLCIMFAAYGVFLAATLGA--------NGNSFAKDPSQMTE 44052

Query: 67    KELWEKN 73
             KEL  +N
Sbjct: 44051 KELANEN 44031


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo
sapiens # Complete
         (226 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    34   0.092
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    32   0.33 
LmjF12_01_20050601_V5.2 [~/leish/curated/chr12/LmjF12_01_2005060...    30   1.7  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    30   1.8  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    28   4.4  
LmjF02_01_20050601_V5.2 [~/leish/curated/chr2/LmjF02_01_20050601...    28   5.5  
LmjF16_01_20050601_V5.2 [~/leish/curated/chr16/LmjF16_01_2005060...    28   7.8  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    27   9.6  

>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 33.9 bits (76), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 2      AAP--APVTRQVSGAAALVPAPSGPDSGQPLAAAVAELPVLDARGQRVPFGALFRERRA 58
              AAP   P  R ++G+AAL P P G     PL  A + LP L +     P+G    + R+
Sbjct: 210670 AAPFSTPKERPMNGSAALPPRPHGEAPSPPLPCACSALPSLTSSAAATPWGGASTKTRS 210494


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 32.0 bits (71), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 104     IEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQS 143
               + PF +L+ Y+  IY++ ER++ +RLG  RG  + S   S
Sbjct: 1058652 MTPFARLSLYTC-IYIERERDVLRRLGASRGGAVYSGDVS 1058536


>LmjF12_01_20050601_V5.2
              [~/leish/curated/chr12/LmjF12_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 675347

 Score = 29.6 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 2      AAPA-PVTRQVSGAAALVPAPSGPDSGQPLAAAVA 35
              AAPA P TR  SGA+ L P   G  S  P AAAV+
Sbjct: 185005 AAPALPSTRSDSGASLLAPTQWGGASTMPRAAAVS 184901


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 29.6 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 21/46 (45%)
 Frame = +1

Query: 3      APAPVTRQVSGAAALVPAPSGPDSGQPLAAAVAELPVLDARGQRVP 48
              APA VTR  S A   VPA    D   P  A     PV    GQR+P
Sbjct: 143935 APAAVTRCRSAAVGCVPAAEKSD---PRTAPRVPSPVAAVSGQRIP 144063



 Score = 28.1 bits (61), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 2      AAPAPVTRQVSGAAALVPAPSGPDSGQPLAAAVAE 36
              A+PAP     +GA A VPA   P +G  L    A+
Sbjct: 191897 ASPAPTAAVSAGAEAEVPATCSPAAGAALDCVCAD 192001


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 28.5 bits (62), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 6      PVTRQVSGAAALVPAPSGPDSGQPLA---AAVAELPVLDARGQRVPFG 50
              P  RQ +  AA VPA +GP++ +      AA   LP+  AR  R P G
Sbjct: 429404 PCQRQSASTAAGVPAVAGPEAERGAGCSRAACWRLPLQQARTLR*PAG 429547


>LmjF02_01_20050601_V5.2
              [~/leish/curated/chr2/LmjF02_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 355714

 Score = 28.1 bits (61), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 49     FGALFRERR---AVVVFVRHFLCYIXKEYV 75
              FGAL+ ERR   A+VVF   ++C   + YV
Sbjct: 249221 FGALWNERRSWVALVVFTHAYVCVYARVYV 249132


>LmjF16_01_20050601_V5.2
              [~/leish/curated/chr16/LmjF16_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 714659

 Score = 27.7 bits (60), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 4      PAPVTRQVSGAAALVPAPSGPDSGQPLAAAVAELPVLDA 42
              PA    + +GAAA VP+P  P +G P A+   + P+  A
Sbjct: 444298 PAASAAEYNGAAARVPSP--PSTGVPHASGAVDCPLQAA 444408


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 27.3 bits (59), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 171    GDPAQQGGTLILGPGNNIHFIHRDRNRLDH 200
              GD    G  ++     +IH IHR+R R+ H
Sbjct: 212881 GDTKNTGKKIVYNADASIHHIHRERERVVH 212970


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000028_1.0 # Protein # Selenoprotein U3 (SelU3) # Homo
sapiens # Complete
         (198 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    31   0.58 
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    29   2.4  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    27   6.7  

>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 31.2 bits (69), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 125     VAAKAKAVGIQGNLSGDLLQSGGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVLGI 182
               +AA  + V  +G L GDL Q GG L   + G K  +  +++  G Y  K+   +V GI
Sbjct: 1532740 LAAAMENVSGKGVLGGDLAQPGGCLASGQAGAKKTMGDIRQDYGQY--KQQFSKVYGI 1532907


>LmjF30_01_20050601_V5.2
               [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 28.9 bits (63), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = -2

Query: 8       RVGACILKHAVTGEAVELRSLWR-EHAC-----VVAGLRRFGXVVCRW 49
               RVGAC+   A   E    RSLW   HAC     + +  RR G    RW
Sbjct: 1033073 RVGACVHSAASLLELAYCRSLWGCTHACARVCVLASSWRRTGSKESRW 1032930


>LmjF22_01_20050601_V5.2
             [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 27.3 bits (59), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 181   GISAEVCASDPPQCDR 196
             G S E C+S PPQC+R
Sbjct: 56828 GWSQEGCSSPPPQCER 56875



 Score = 26.9 bits (58), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -3

Query: 123    RDVAAKAKAVGIQGNLSGDLLQSGGLLVV--SKGGDKVLLHFVQKSPGDYVPKEHILQ 178
              ++ AA  +  G   ++SG    SGG +    S+GGD  +L +  + PGD V  EH+LQ
Sbjct: 581441 QEFAAAFECEGSTFSVSG----SGGNITTGPSRGGDAFVLCY--EHPGDGVTAEHLLQ 581286


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000029_1.0 # Protein # Selenoprotein V (SelV) # Homo
sapiens # Complete
         (346 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    31   1.2  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    31   1.2  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    30   1.9  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    30   2.8  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    30   4.0  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    29   4.5  
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    29   5.2  
LmjF12_01_20050601_V5.2 [~/leish/curated/chr12/LmjF12_01_2005060...    29   5.4  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    29   5.4  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    29   6.1  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    28   7.0  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   7.6  
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    28   7.8  
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    28   8.4  
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    28   8.7  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    28   9.5  

>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 31.2 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 5/122 (4%)
 Frame = -2

Query: 38      RTRTPIRTL-----TPVLTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAW 92
               RT+ P+  L       +L+P    T   V      ++ TLVP     R   L PP A   
Sbjct: 1060995 RTKAPLAGLLCMQENSILSPDATHTLSYVSVCLRVRVDTLVPPRFANRSYFLCPPCASLC 1060816

Query: 93      IPTPVPTPVPVRNPTPVPTPARTLTPPVRVPAPAPAQLLAGIRAALPVLDSYLAPALPLD 152
               +   +PT        PV  P   + PP+R P   P    A  R         +AP+ P  
Sbjct: 1060815 LSPVLPTTFHALPDLPVCVPPLGIPPPIR*PTHKPIHARAHQRRGAESCFCQVAPSSPFT 1060636

Query: 153     PP 154
                P
Sbjct: 1060635 AP 1060630


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 31.2 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
 Frame = -3

Query: 8       PAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTL---TPVLTPSPAGTSP----- 59
               P+  SA T+ S R S   +TP P R+PT +R R    T    +   +P+PA +SP     
Sbjct: 1385127 PSACSATTAWSCRRS*TCKTPAPYRSPTRLRRRLSGSTCS*RSARTSPTPAASSPATQAS 1384948

Query: 60      LVLTPAPAQIPTLVPTPALARIP 82
               +V + +P+ IP+LV   A  R+P
Sbjct: 1384947 VVSSFSPSWIPSLVSLVAARRLP 1384879


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 30.4 bits (67), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 54/139 (38%)
 Frame = -1

Query: 1      MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPL 60
              M +    P   +A  +T    +     P P  + +P  T     T + V    P     L
Sbjct: 604885 MESSQIPPPTGAAVGATVAPVAAGHSRPLPASSASPPVTPA---TRSRVAAVPPKSPIQL 604715

Query: 61     VLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTPPV 120
               LT +P    T +PTP+L R P   P PA +       TPV        P+PA +   P 
Sbjct: 604714 SLTASPKSSVTGMPTPSLPRSPAPQPTPASS---AGASTPVGQHLNRSAPSPASSAHSP- 604547

Query: 121    RVPAPAPAQLLAGIRAALP 139
                P P   Q  +G+ + LP
Sbjct: 604546 --PTPQQQQRESGVASVLP 604496



 Score = 30.4 bits (67), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +1

Query: 45      TLTPVLTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVR 104
               T + + +P P  + PL L P+P   P +   P         P PA    PT +  P P+ 
Sbjct: 1849729 TPSSLPSPYPGFSPPLSLIPSPQAFPVMNAMPFSMVYS---PTPATTGAPTQIVYPQPIY 1849899

Query: 105     NPTPVPTPARTLTPPVRVPAPAPAQL 130
                  P    A  +  P  +P P    L
Sbjct: 1849900 QTIPPFYSASAVPIPAPIPLPQKGDL 1849977


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 30.0 bits (66), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +1

Query: 72     LVPTPALARIPRLVPP----PAPAWIPTPVPTPVPVRNP 106
              LV   A AR P LVPP     APA  PT   +P+P+ +P
Sbjct: 679360 LVHVDASARTPSLVPPHRRVGAPASRPTHFGSPLPMPSP 679476


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 29.6 bits (65), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%)
 Frame = -3

Query: 8      PAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67
              PA  + R   ++  ST +R P  +R    V     +  +   L P+P     + L  +P+
Sbjct: 520121 PARCTQRRCPALPCSTASRRPQRIRAA--VELAWLLWGIAQALEPAPTAPLAMQLAESPS 519948

Query: 68     QIPTLVPTPALARIPRLVPPPAPAWIPTPVPTP 100
              +  T       +R+PR +    PA  P  + TP
Sbjct: 519947 ESTTRTHVQPSSRVPRFLYQRPPASSPVGMKTP 519849


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 29.3 bits (64), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 89     APAWIPTPVPTPVPVR-NPTP-VPTPARTLTPPVRVPAPAPAQLLAGIR 135
              +P+W P PV TP+ +  +PTP +PT   TL  PV +    P+ L +  R
Sbjct: 501438 SPSWHPPPVSTPLGLPLHPTPHIPT---TLASPVHLHHCTPSSLSSPFR 501575


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 29.3 bits (64), Expect = 5.2,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
 Frame = -1

Query: 13     ARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPAQIPTL 72
              AR   S  AS+ +  P P  TP P RTR P    +   T +P   +   L  A   +P +
Sbjct: 214790 ARIRMSSTASSASLLPCPASTPYPTRTRAPHVLSSSSSTAAPPNAAK-TLKQADMPLPLM 214614

Query: 73     VPTPALARIPRLVPPPAPAWIPTPVPTPVP--VRNPTPVPTPARTLTPPVRVPA 124
                  + A +     PPA A  P+     +    RNP  +    R+L PP   PA
Sbjct: 214613 SSLSSAAGVVSSTAPPASAPEPSFASYVLERVSRNPFLIGETPRSLRPPPSQPA 214452


>LmjF12_01_20050601_V5.2
              [~/leish/curated/chr12/LmjF12_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 675347

 Score = 28.9 bits (63), Expect = 5.4,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 53/140 (37%)
 Frame = +2

Query: 121    RVPAPAPAQLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPS 180
              R    A  +L A   A+ P++      A PL PP +              P P+  L+  
Sbjct: 129032 RAAGMASKRLPAAPTASAPIVKEAAVDATPLSPPLQCTAP----------PQPANALMKV 129181

Query: 181    VSSEAGPAPGPLPTRTPLAANSPGPTLDFTFRADPSAIGLADPPIPSPVPSPILGTIPSA 240
               +    P P   P RT + + S         R   S   LA PP+ S  P P+   +P+ 
Sbjct: 129182 SNPTTSPPPLASPCRTHIVSAS-----SMERRRPSSDRQLALPPVRSSTPQPLPSRLPAH 129346

Query: 241    ISLQNCTETFPSSSENFALD 260
              IS    + + P  S + A D
Sbjct: 129347 ISFTVQSVSKPCKSSHSAPD 129406


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 28.9 bits (63), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 6       RTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIR 44
               + P+P++ +  T     TPTR  +   +PT V TR P R
Sbjct: 1150136 QEPSPTAQKPQTKRDTDTPTRQESERHSPTKVSTRVPCR 1150252


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 28.9 bits (63), Expect = 6.1,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = +2

Query: 36     PVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPAQIPTLVPTPA---LARIPRLVPPPAPAW 92
              P R RT  R  +P    S  G  PL  +      P+   + A     R PR  P  A A 
Sbjct: 464276 PPRERT--RFSSPAAGSSRVGAPPLPHSAGSKDHPSGGSSSANVGAERSPRSGPSDASAQ 464449

Query: 93     IPTPVPTPVPVRNPTPVPTPARTLTPPVRVPAPAPAQLLAGIRAA 137
               P       P+R PTP P  A++  P  R+      Q+L G+RA+
Sbjct: 464450 RP-------PLREPTPAPVSAKSNCPKNRM------QMLDGLRAS 464545


>LmjF29_01_20050601_V5.2
             [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 28.5 bits (62), Expect = 7.0,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 49/147 (33%), Gaps = 3/147 (2%)
 Frame = +2

Query: 64    PAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTP---PV 120
             P P   P   P    A  PR  P P P   P P P   P   P   P P     P   P 
Sbjct: 34940 PQPRDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPHDGPAPQPHDGPAPQPH 35119

Query: 121   RVPAPAPAQLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPS 180
               PAP P    A      P    +  PA      P P P     P+    PAP  +  P+
Sbjct: 35120 DGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPHDGPAPQPHDGPAPQPRDGPA 35299

Query: 181   VSSEAGPAPGPLPTRTPLAANSPGPTL 207
                  GPAP P     P   + P P L
Sbjct: 35300 PQPRDGPAPQPRDGLAPQPRDGPAPRL 35380



 Score = 28.5 bits (62), Expect = 9.0,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
 Frame = +2

Query: 64    PAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTP---PV 120
             P P   P   P    A  PR  P P P   P P P   P   P   P P     P   P 
Sbjct: 33932 PQPRDGPAPQPRDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPR 34111

Query: 121   RVPAPAPAQLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPS 180
               PAP P    A      P    +  PA      P P P     P+    PAP  +  P+
Sbjct: 34112 DGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPRDGPA 34291

Query: 181   VSSEAGPAPGPLPTRTPLAANSPGP 205
                  GPAP P     P   + P P
Sbjct: 34292 PQPHDGPAPQPHDGPAPQPRDGPAP 34366



 Score = 28.5 bits (62), Expect = 9.0,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
 Frame = +2

Query: 64    PAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTP---PV 120
             P P   P   P    A  PR  P P P   P P P   P   P   P P     P   P 
Sbjct: 34172 PQPHDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPR 34351

Query: 121   RVPAPAPAQLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPS 180
               PAP P    A      P    +  PA      P P P     P+    PAP  +  P+
Sbjct: 34352 DGPAPQPRDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPRDGPA 34531

Query: 181   VSSEAGPAPGPLPTRTPLAANSPGP 205
                  GPAP P     P   + P P
Sbjct: 34532 PQPHDGPAPQPRDGPAPQPHDGPAP 34606



 Score = 28.1 bits (61), Expect = 9.3,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
 Frame = +2

Query: 64    PAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTP---PV 120
             P P   P   P    A  PR  P P P   P P P   P   P   P P     P   P 
Sbjct: 33524 PQPRNGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPR 33703

Query: 121   RVPAPAPAQLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPS 180
               PAP P    A      P    +  PA      P P P     P+    PAP  +  P+
Sbjct: 33704 DGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPRDGPA 33883

Query: 181   VSSEAGPAPGPLPTRTPLAANSPGP 205
                  GPAP P     P   + P P
Sbjct: 33884 PQPHDGPAPQPHDGPAPQPRDGPAP 33958



 Score = 28.1 bits (61), Expect = 10.0,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 48/145 (33%), Gaps = 3/145 (2%)
 Frame = +2

Query: 64    PAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTP---PV 120
             P P   P   P    A  PR  P P P   P P P   P   P   P P     P   P 
Sbjct: 33404 PQPRNGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPRNGPAPQPHDGPAPQPR 33583

Query: 121   RVPAPAPAQLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPS 180
               PAP P    A      P    +  PA      P P P     P+    PAP  +  P+
Sbjct: 33584 DGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPHDGPAPQPRDGPAPQPHDGPAPQPRDGPA 33763

Query: 181   VSSEAGPAPGPLPTRTPLAANSPGP 205
                  GPAP P     P   + P P
Sbjct: 33764 PQPHDGPAPQPHDGPAPQPRDGPAP 33838


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.5 bits (62), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 75     TPALARIPRLVPPPAPAWIPTPVPTP-------VPVRNPTPVPTPARTLTPPV 120
              +P LAR P  + PP+ A I +P+P          P  N    PT  R  TPP+
Sbjct: 291039 SPPLARQPYTMTPPSVAPIRSPIPRSSAATSAFTPSHNAVSTPTAHRLRTPPL 290881


>LmjF27_01_20050601_V5.2
             [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 28.5 bits (62), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 8     PAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIR 44
             P  SSA +  SV A  P  +  PL   TP+RT + IR
Sbjct: 18043 PLASSALSCASVSAHMPCYSEAPLFLLTPLRTSSQIR 17933


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 28.5 bits (62), Expect = 8.4,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 59/167 (35%)
 Frame = +3

Query: 17     TSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPAQIPTLVPTP 76
              T+       ++P PLRT TP    T +RT +       +   P V   A          P
Sbjct: 129951 TATSTPAAAQSPHPLRTHTPQLLPTHVRTNSFAEKTLSSSQKPSVKATAADDTAASRAKP 130130

Query: 77     ALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTPPVRVPAPAPAQLLAGIRA 136
               +A + RLV    P  IPT +  P      +P        +    +PA    Q +  +  
Sbjct: 130131 RVAEVHRLVTGSPPTMIPTTIDIPA-----SPSANDGTPASNAAAMPASEALQKMKPMET 130295

Query: 137    ALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSS 183
                P  +    P+L     P PA   P+     P P   L+    VS+
Sbjct: 130296 DKPDDE---VPSLARTVAPHPAANGPIHISRHPTPGQKLRTPSPVST 130427


>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 28.5 bits (62), Expect = 8.7,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = -3

Query: 4      QARTPAPSSARTSTSVRASTPTRTPT---PLRTPTPVRTRTPIRTLTPVLTPSPAGTSPL 60
              ++R+ A  +AR +   +A    R  +    L   TP R +     L P  TP    TSP 
Sbjct: 267166 ESRSGAIPTARLTQPPQAVAAARQHSRSDSLLPSTPGRQQQLAVALMPSFTPPHDSTSPS 266987

Query: 61     VLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTP 100
              + TPAP Q       PA++  P  V   A +  P  VP P
Sbjct: 266986 LRTPAPQQTSPCTSAPAVS-APVNVTVSAISDAPDDVPLP 266870


>LmjF13_01_20050601_V5.2
             [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 28.1 bits (61), Expect = 9.5,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -1

Query: 106   PTPVPTPA--RTLTPPVRV--PAPAPAQLLAGIRAALPVLDSYLAPALPLDPPP 155
             PTP  T A  RT T P+ V    P P  +   + A +PV+  +  P+LPL   P
Sbjct: 55078 PTPTRTQAHTRTTTLPISVISSPPLPLCIFFSLIALIPVVHPFRPPSLPLLSCP 54917


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Homo
sapiens # Complete
         (87 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    27   3.0  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    26   3.7  

>LmjF33_01_20050601_V5.2
             [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 26.6 bits (57), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 27    EDEFPGRLDICGEGTPQATGFFEV 50
             ++E+PG L +C  GT  + GFF V
Sbjct: 23454 DNEYPGNLFLCLCGTDSSGGFFVV 23383


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 26.2 bits (56), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 57     IHSKKKGDGYVDTESKFLKLVAAIKA 82
              +HS+KK   +V TE   L L+  IKA
Sbjct: 271547 VHSRKKSPRFVSTERDVLGLIKQIKA 271624


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Homo
sapiens # Complete
         (115 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    37   0.003
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    27   3.0  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    25   7.6  

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 37.0 bits (84), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%)
 Frame = +3

Query: 55     IESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGETL 102
              I   LG TGAFE+ ++G+L+FSKL+ G  P     +  IRR    +TL
Sbjct: 510621 IGGALGQTGAFEVSLDGELIFSKLQAGAVP----AVAEIRRIVLQKTL 510752


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 5      PGQTSVAPPPEEVEPG 20
              PG TSV+P P +V PG
Sbjct: 392383 PGATSVSPSPADVAPG 392430


>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 25.4 bits (54), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 5       PGQTSVAPPPEEVEPGSGVRIVVEYCEPXGFEATYLELASAVKEQYPGIEIE 56
               P   S  PP  ++ PGS V  +   C P   E T L  +   KE+  GI  E
Sbjct: 1000847 PLWESCTPPQPKMSPGS-VEAMALKCRPPSAE*TMLSRSMFAKERRSGIGCE 1000999


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete
         (499 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   236   3e-62
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   157   1e-38
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    78   2e-14
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    69   6e-12
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    36   0.064
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    34   0.21 
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    32   1.2  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    31   2.4  
LmjF08_01_20050601_V5.2 [~/leish/curated/chr8/LmjF08_01_20050601...    30   5.0  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  236 bits (602), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 161/484 (33%), Positives = 244/484 (50%), Gaps = 11/484 (2%)
 Frame = +1

Query: 10     SYDYDLIIIGGGSGGLAAA-KEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 68
              S  YDL+++G GSGGL A    AA Y KKV V+D            LGGTCVNVGC+PKK
Sbjct: 105670 SRAYDLVVLGAGSGGLEAGWNAAATYKKKVAVVDVQATHGPPFFAALGGTCVNVGCVPKK 105849

Query: 69     LMHQAALLGQALQDSRNYGWKV-EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKK-VV 126
              LM   A     +++S  +GW++  E++  +W  +I A    +  +N  Y+    + + + 
Sbjct: 105850 LMVTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAAKNKVVNGINESYKSMFADTEGLS 106029

Query: 127    YENAYGQFIGPH----RIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD 182
              +   +G     H    R     N    +    E  LIATG  P  LG+PGD E+CI+S++
Sbjct: 106030 FHMGFGALQDAHTVLVRKSEDPNSDVLETLDTEYILIATGSWPTRLGVPGD-EFCITSNE 106206

Query: 183    LFSLPYCPGKTLVVGASYVALECAGFLAGI---GLDVTVMVR-SILLRGFDQDMANKIGE 238
               F L   P + L VG  Y+A+E AG   G    G  V +  R  ++LRGFD ++   + +
Sbjct: 106207 AFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGYVDLCYRGDLILRGFDTEVRKSLTK 106386

Query: 239    HMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR 298
               +  +GI+      P K+ + E G+           +  +  E +Y+ VMLAIGR   ++
Sbjct: 106387 QLGANGIRVRTNLNPTKITKNEDGS--------NHVHFNDGTEEDYDQVMLAIGRVPRSQ 106542

Query: 299    KIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLY 358
               + L+  GV+   K G + V    +T+V  IYAIGD+  ++V LTPVAI  G   A+ ++
Sbjct: 106543 TLQLDKAGVQ-TAKNGAVQVDAYSKTSVDNIYAIGDV-TNRVMLTPVAINEGAAFAETVF 106716

Query: 359    AGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDN 418
               G     D+  V   VF+    G CG++EE+A +    E + VY S F PL   I    +
Sbjct: 106717 GGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKN--HETVAVYESCFTPLMHNISGSKH 106890

Query: 419    NKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 478
               +   +II +    E V+G H+LG +A E+ Q     +K G       +TIG+HP  AE 
Sbjct: 106891 KEFMIRIITDQPSGE-VLGVHMLGDSAPEIIQSVGICMKMGAKISDFHNTIGVHPTSAEE 107067

Query: 479    FTTL 482
                ++
Sbjct: 107068 LCSM 107079


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  157 bits (398), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 216/470 (45%), Gaps = 5/470 (1%)
 Frame = +1

Query: 13      YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LMH 71
               YD+ +IGGG GG  AA +AAQ G K   ++         R  LGGTC+NVGCIP K L+H
Sbjct: 1324453 YDVTVIGGGPGGYVAAIKAAQLGLKTACIE--------KRGALGGTCLNVGCIPSKALLH 1324608

Query: 72      QAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY 131
                  L   A  +   YG +  E V  D   M       + +L  G     ++ KV Y    
Sbjct: 1324609 ATHLYHDAHANFAQYGLRGGENVTMDVSAMQAQKGKGVKALTGGVEYLFKKNKVTYYKGE 1324788

Query: 132     GQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG-IPGDKEYCISSDDLFSLPYCP 190
               G F+ P+ IK     GKE+   +++ ++ATG  P  L  +P D++  +SS     L + P
Sbjct: 1324789 GSFVNPNTIKVKGLDGKEETLESKKTIVATGSEPTELPFLPFDEKVVMSSTGALDLDHVP 1324968

Query: 191     GKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIR 249
                K +VVG   + LE     A +G +VTV+   S      D D++  + + + +H    I 
Sbjct: 1324969 KKMIVVGGGVIGLELGSVWARLGAEVTVVEFASRCAATTDADVSKALTDALVKHEKMKIM 1325148

Query: 250     QFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKI 309
                   + V     G+   + V  +    + +   E + ++ ++GR   T   GL    + +
Sbjct: 1325149 TNTKV-VSGTNNGSSVTIEVEDKDGKHQTL---EADALLCSVGRRPHT--TGLNAEAINL 1325310

Query: 310     NEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYEN 369
                 + G I + D  +TNVP +YAIGD++     L   A + G   A+ L AG     +Y  
Sbjct: 1325311 QMERGFICINDHFETNVPNVYAIGDVVNKGPMLAHKAEEEGVACAEIL-AGKPGHVNYSV 1325487

Query: 370     VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DNNKCYAKIIC 427
               +P  ++T  E    G +EE+ V+K G +    Y    +P      ++       + K++ 
Sbjct: 1325488 IPGVIYTNPEVAQVGETEEQ-VKKRGID----YKVGKFPFSANSRAKAVGTEDGFVKVVT 1325652

Query: 428     NTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 477
               + K  +R++G  ++   AGE+      A++ G + + L  T   HP  +E
Sbjct: 1325653 DKK-TDRILGVQIVCTAAGEMIAEPTLAMEYGASSEDLGRTCHAHPTMSE 1325799


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 100/459 (21%), Positives = 187/459 (40%), Gaps = 10/459 (2%)
 Frame = -2

Query: 31     AAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQAL--QDSRNYGW 88
              A + GKK  +++            +GG     G +  K + + A   +      S  +  
Sbjct: 818506 AYELGKKACIIE---------ESRIGGADFWNGALQSKTLWEMAKFARYTMGNTSHRFMK 818354

Query: 89     KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGK 148
               V E  K     +I+A+ N   +        L    +   +  G F  P+ +  T   G 
Sbjct: 818353 SVIELPKIKHSNLIKAITNAAETRETQTLEVLANAHIEVLSGLGSFKTPNSVAVTKKDGT 818174

Query: 149    EKIYSAERFLIATGERPR-YLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAG 207
              E+   A+ F+IATG  PR +     D +   +SDD+   P  P   +++GA  +  E A 
Sbjct: 818173 EETVEADYFVIATGAHPRPHPTAVADGKVVFTSDDIMMQPL-PKSIVIIGAGVIGCEFAS 817997

Query: 208    FLAGIGL-DVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPG 265
                A  G+  V ++ +S  +L   D+D+A  +   +E+ G+ F          +  +   G
Sbjct: 817996 IFANFGVTQVNIIEKSGRILPMEDEDIALFVQTLLEQKGVCFHHH----SAMESSSINDG 817829

Query: 266    RLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTN 325
              +     +      + +   ++ +++IGR     K+ LE +G+ +  K  +I   DE    
Sbjct: 817828 KFHYTLRDVRDNSLHQHVTDSALVSIGRVPAISKLNLEAIGITV--KGNRID-RDEFLRI 817658

Query: 326    VP--YIYAIGDILEDKVELTPVAIQAGRLLAQRLYA---GSTVKCDYENVPTTVFTPLEY 380
               P  +IYA GD    +V L  VA   GR     +Y       +K   +N+ T +F   E 
Sbjct: 817657 EPHKHIYACGDTCT-RVALVNVAELEGRACIDHMYTPYPEEQLKLKLDNLSTIMFLDQEV 817481

Query: 381    GACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHV 440
               A GL+E++  +K         +SY +       +  N + + K++       +V+G   
Sbjct: 817480 AAVGLNEQQC-QKMSISYKMARYSYEYVGRAL--AMGNTRGFIKLVVTNDKKMQVLGVRA 817310

Query: 441    LGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 479
              +GP+A  + +  + A+    +   L +   ++P   + F
Sbjct: 817309 VGPHASSIIELASLAIHNRDSAYDLRNLHAVYPAITQGF 817193


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 181/446 (40%), Gaps = 26/446 (5%)
 Frame = -3

Query: 31      AAQYGKKVMVLDFVTPTPLGTRWG---LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG 87
               A  YGK V +++       G R G   LGGT      +P K+M++ A    +L       
Sbjct: 1279299 AIGYGKSVCIVE-------GGRVGGADLGGT------VPSKMMYEIAHFAASLTGPEF-- 1279165

Query: 88      WKVEETVKHD----------WDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGP 137
                 V + VK D           +R+ + ++         YR  L    V        F  P
Sbjct: 1279164 --VRDLVKPDEMQSIVDGIPSERITQLLRKTCTGKEREYRAFLEASGVQLIEGKATFANP 1278991

Query: 138     HRIKA-TNNKGKEKIYSAERFLIATGERPRYLGIPG-DKEYCISSDDLFSLPYCPGKTLV 195
               + I   T   G+ +   A+  +IATG  PR       D    ++S  LF +P  P   +V
Sbjct: 1278990 NEIDVHTEGTGEYRSLQADNVVIATGAIPRSHAFAKCDHNRILNSTSLFEMP-IPASMVV 1278814

Query: 196     VGASYVALECAGFLAGIGLDVTVMVRSI--LLRGFDQDMANKIGEHMEEHGIKFIRQFVP 253
               +GA  +  E A   A +G     +V     +L   D+D+A+ +  H+   G+  I Q   
Sbjct: 1278813 IGAGAMGCEVASMFAKLGRTKVRLVDKAPRILPKEDEDVASYVQRHLIRRGV-VIHQ--G 1278643

Query: 254     IKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKT 313
                ++  +EAG     R   +   S +I        M+A+GR      +GLE   +++  + 
Sbjct: 1278642 CRLFDLEAGEED-CRYSLRDIFSGDIETYHAERAMVAVGRQPNLGALGLENTKMRV--EN 1278472

Query: 314     GKIPVTDEEQTNVPY--IYAIGDILEDKVELTPVAIQAGRLLAQRLYAGS----TVKCDY 367
               G++   DE     PY  IY IGD    + +    A  AG+ +   ++  S          
Sbjct: 1278471 GQLDC-DEYGRCKPYKHIYCIGDA-TGRQKTVNTAQTAGQAVVDTMFGCSPKLAVSNNAL 1278298

Query: 368     ENVPTTVFTPLEYGACGLSEEKAVEK---FGEENIEVYHSYFWPLEWTIPSRDNNKCYAK 424
                N+ T +F   E  + GLSE++       +    +E Y     P+   + ++D    + K
Sbjct: 1278297 TNIATDMFLEDEVASIGLSEKQCRASGIGYIVARLE-YKHLTRPI--VMGAKDG---FVK 1278136

Query: 425     IICNTKDNERVVGFHVLGPNAGEVTQ 450
               +I      +RV+G   +GP+AG V +
Sbjct: 1278135 MIVTNDREKRVLGVRAVGPHAGSVVE 1278058



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 107/476 (22%), Positives = 202/476 (42%), Gaps = 30/476 (6%)
 Frame = -2

Query: 34      YGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQ-AALLGQALQDS--RNYGWKV 90
               Y K+V V++         +  LGG  +  G +  K M + +A++ +   D+  R YG  +
Sbjct: 1282795 YNKRVCVVE---------KARLGGNDLWDGALQSKTMWECSAIMAKMRGDAAMRLYGESL 1282643

Query: 91      EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQ--FIGPHRIKATNNKGK 148
               +  ++ D  +M ++++          + AL+    V E   G+  F   H I+  + + K
Sbjct: 1282642 DRYLEIDEVKMRQSMEQVSRIREEQIQAALKASPNV-ELVLGRATFSSNHEIQCHSKRTK 1282466

Query: 149     E-KIYSAERFLIATGERPR-YLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECA 206
               E +  +A+ F++ATG +PR +  +  D    ++SD +   P  P   ++VGA  +  E A
Sbjct: 1282465 EFRSITADYFIVATGSKPRKHPYVAADGRLVMTSDHIMRAPL-PKSLVIVGAGVIGCEFA 1282289

Query: 207     GFLAGIG-LDVTVMVRS--ILLRGFDQDMANKIGEHMEEHGIK-------FIRQFVPIKV 256
                 +  +G   V+++ ++  IL R  D D+   I   M+  GI        +  Q     V
Sbjct: 1282288 SIIGRLGKTKVSIIDKAPHILPRE-DPDIVRMIESGMDRAGIVVHHNSDLYDMQPWEETV 1282112

Query: 257     EQIEAGTPGR------LRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKIN 310
               E+ +A  P        ++       + ++   +    +++IGR     ++G+E   +K  
Sbjct: 1282111 EEAKARHPADPAPQSGVQYTVMDRTTRKLTTFQVERALISIGRVPDYSRLGIENTTLKT- 1281935

Query: 311     EKTGKIPVTDEEQ-TNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGS--TVKCDY 367
                +  ++ V +  Q    P+I+A+GD     ++L  +     +L    +Y      V    
Sbjct: 1281934 -RGSQLHVNEFGQCVGTPHIFAVGDA-ATHMQLVSMGEAQAKLAVDYIYGTEPKVVPNLT 1281761

Query: 368     ENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR----DNNKCYA 423
               E + +  F      + G +E +  EK G   I   +SY       + SR     N K + 
Sbjct: 1281760 ETMSSVAFLTRAVASVGYNESQCREK-GIAYIAARYSY------EVVSRAVAAANTKGFV 1281602

Query: 424     KIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 479
               KIIC      R++G   LG NA  +    A A++ G     L   +  +P  ++ F
Sbjct: 1281601 KIICADDPERRILGVRALGMNASTLVDIGALAIQNGQGVFDLAGRLTAYPAVSQAF 1281434


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 36.2 bits (82), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -2

Query: 10     SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLD 42
              SYDYD+II+GG   G   AK  +  G+KV++++
Sbjct: 612768 SYDYDVIIVGGSIAGPVLAKALSDQGRKVLMVE 612670


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 34.3 bits (77), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +2

Query: 13     YDLIIIGGGSGGLAAAKEAAQYGKKVMVLD 42
              +DL++IGGG  GL  A +AAQ G +V ++D
Sbjct: 164033 FDLLVIGGGLTGLYTAVDAAQRGLRVALVD 164122


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 15     LIIIGGGSGGLAAAKEAAQYGKKVMVLD---FVTPTPLGTRWGLGGT 58
              +II+GGG  G+ AA  + Q+G  V++LD   F+         G+ GT
Sbjct: 377213 IIIVGGGLAGVCAAHASLQHGGSVLLLDKSAFLGGNSTKASSGIAGT 377353


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 15     LIIIGGGSGGLAAAKEAAQYGKKVMVLD 42
              +II+GGG  G +AA EAA  G +V++L+
Sbjct: 537268 VIIVGGGLAGCSAAIEAANCGAQVILLE 537351


>LmjF08_01_20050601_V5.2
              [~/leish/curated/chr8/LmjF08_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 574972

 Score = 29.6 bits (65), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 33     QYGKKVMVLDFVTPTPLGTRWGLGGTC 59
              Q+G+   V   +TPTP G  WGL G C
Sbjct: 311704 QHGRVACV---ITPTPFGLFWGLFGVC 311775


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000035_1.0 # Protein # Thioredoxin reductase 2 (TR2) #
Homo sapiens # Complete
         (524 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   249   4e-66
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   150   2e-36
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    88   1e-17
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    87   3e-17
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    39   0.014
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    31   1.9  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    31   2.0  
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    31   2.2  
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    31   2.5  
LmjF02_01_20050601_V5.2 [~/leish/curated/chr2/LmjF02_01_20050601...    31   3.1  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  249 bits (636), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 169/484 (34%), Positives = 260/484 (53%), Gaps = 13/484 (2%)
 Frame = +1

Query: 38     RDYDLLVVGGGSGGLACA-KEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKL 96
              R YDL+V+G GSGGL      AA   +KVAVVD            LGGTCVNVGC+PKKL
Sbjct: 105673 RAYDLVVLGAGSGGLEAGWNAAATYKKKVAVVDVQATHGPPFFAALGGTCVNVGCVPKKL 105852

Query: 97     MHQAALLGGLIQDAPNYGWEV-AQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYF 155
              M   A    LI+++  +GWE+  + +  +W+ +  A    V  +N  ++    D +   F
Sbjct: 105853 MVTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAAKNKVVNGINESYKSMFADTEGLSF 106032

Query: 156    NIK-ASFVDEHTVCGVAKG---GKEIL--LSADHIIIATGGRPRYPTHIE-GALEYGITS 208
              ++   +  D HTV  V K      ++L  L  ++I+IATG    +PT +     E+ ITS
Sbjct: 106033 HMGFGALQDAHTVL-VRKSEDPNSDVLETLDTEYILIATGS---WPTRLGVPGDEFCITS 106200

Query: 209    DDIFWLKESPGKTLVVGASYVALECAGFLTGI----GLDTTIMMRSIPLRGFDQQMSSMV 264
              ++ F+L+++P + L VG  Y+A+E AG   G     G         + LRGFD ++   +
Sbjct: 106201 NEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGYVDLCYRGDLILRGFDTEVRKSL 106380

Query: 265    IEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDTRS 324
               + + ++G R      P+++ +  DG   V + D T  +ED   +D V+ AIGRVP +++
Sbjct: 106381 TKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGT--EED---YDQVMLAIGRVPRSQT 106545

Query: 325    LNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFG 384
              L L+KAGV T+ +   + VD+   TSV +IYAIGDV   R  LTP+AI  G    + +FG
Sbjct: 106546 LQLDKAGVQTAKNG-AVQVDAYSKTSVDNIYAIGDVTN-RVMLTPVAINEGAAFAETVFG 106719

Query: 385    GSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDAS 444
              G     D+  V   VF+    G  G++EEEA   H  E V VY + + PL   ++G    
Sbjct: 106720 GKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNH--ETVAVYESCFTPLMHNISGSKHK 106893

Query: 445    QCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEV 504
              +  ++++   +P   VLG+H LG +A E+ Q   + +K GA  +    T+G+HPT +EE+
Sbjct: 106894 EFMIRIIT-DQPSGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFHNTIGVHPTSAEEL 107070

Query: 505    VKLR 508
                +R
Sbjct: 107071 CSMR 107082


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  150 bits (379), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 207/468 (44%), Gaps = 3/468 (0%)
 Frame = +1

Query: 40      YDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKK-LMH 98
               YD+ V+GGG GG   A +AAQLG K A ++         R  LGGTC+NVGCIP K L+H
Sbjct: 1324453 YDVTVIGGGPGGYVAAIKAAQLGLKTACIE--------KRGALGGTCLNVGCIPSKALLH 1324608

Query: 99      QAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 158
                  L      +   YG    + V  D   M       VK+L  G     +  KV Y+  +
Sbjct: 1324609 ATHLYHDAHANFAQYGLRGGENVTMDVSAMQAQKGKGVKALTGGVEYLFKKNKVTYYKGE 1324788

Query: 159     ASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESP 218
                SFV+ +T+      GKE  L +   I+ATG  P     +    +  ++S     L   P
Sbjct: 1324789 GSFVNPNTIKVKGLDGKEETLESKKTIVATGSEPTELPFLPFDEKVVMSSTGALDLDHVP 1324968

Query: 219     GKTLVVGASYVALECAGFLTGIGLDTTIM-MRSIPLRGFDQQMSSMVIEHMASHGTRFLR 277
                K +VVG   + LE       +G + T++   S      D  +S  + + +  H    ++
Sbjct: 1324969 KKMIVVGGGVIGLELGSVWARLGAEVTVVEFASRCAATTDADVSKALTDALVKHEK--MK 1325142

Query: 278     GCAPSRVRRLPDGQLQVTWE-DSTTGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSP 336
                   ++V    +    VT E +   GK  T   D +L ++GR P T  LN E   ++   
Sbjct: 1325143 IMTNTKVVSGTNNGSSVTIEVEDKDGKHQTLEADALLCSVGRRPHTTGLNAE--AINLQM 1325316

Query: 337     DTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVP 396
               +   I ++    T+VP++YAIGDVV   P L   A   G +    +  G    ++Y  +P
Sbjct: 1325317 ERGFICINDHFETNVPNVYAIGDVVNKGPMLAHKAEEEG-VACAEILAGKPGHVNYSVIP 1325493

Query: 397     TTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREP 456
                 ++T  E   VG +EE+   R     V  +          V   D    +VK+V  ++ 
Sbjct: 1325494 GVIYTNPEVAQVGETEEQVKKRGIDYKVGKFPFSANSRAKAVGTEDG---FVKVVTDKKT 1325664

Query: 457     PQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEV 504
                + +LG+  +   AGE+     L ++ GAS   + RT   HPT SE V
Sbjct: 1325665 DR-ILGVQIVCTAAGEMIAEPTLAMEYGASSEDLGRTCHAHPTMSEAV 1325805


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 134/499 (26%), Positives = 222/499 (44%), Gaps = 23/499 (4%)
 Frame = -3

Query: 31      RGAAAGQRDYDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWG---LGGTCV 87
               R A A  R  DL V+GGG GG+A A  A   G+ V +V       +G R G   LGGT  
Sbjct: 1279377 RSAGAFPR-VDLCVIGGGPGGIAAAMRAIGYGKSVCIV-------EGGRVGGADLGGT-- 1279228

Query: 88      NVGCIPKKLM----HQAALLGG--LIQD--APNYGWEVAQPVPHDWRKMAEAVQNHVKSL 139
                   +P K+M    H AA L G   ++D   P+    +   +P +  ++ + ++      
Sbjct: 1279227 ----VPSKMMYEIAHFAASLTGPEFVRDLVKPDEMQSIVDGIPSE--RITQLLRKTCTGK 1279066

Query: 140     NWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKG-GKEILLSADHIIIATGGRPRYPTHI 198
                  +R  L+   V+    KA+F + + +    +G G+   L AD+++IATG  PR     
Sbjct: 1279065 EREYRAFLEASGVQLIEGKATFANPNEIDVHTEGTGEYRSLQADNVVIATGAIPRSHAFA 1278886

Query: 199     EGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIP--LRGF 256
               +      + S  +F +   P   +V+GA  +  E A     +G     ++   P  L   
Sbjct: 1278885 KCDHNRILNSTSLFEMP-IPASMVVIGAGAMGCEVASMFAKLGRTKVRLVDKAPRILPKE 1278709

Query: 257     DQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQ--LQVTWEDSTTGKEDTGTFDTVLW 314
               D+ ++S V  H+   G    +GC   R+  L  G+   + +  D  +G  +T   +  + 
Sbjct: 1278708 DEDVASYVQRHLIRRGVVIHQGC---RLFDLEAGEEDCRYSLRDIFSGDIETYHAERAMV 1278538

Query: 315     AIGRVPDTRSLNLEKAGVDTSPDTQKILVDSRE---ATSVPHIYAIGDVVEGRPELTPIA 371
               A+GR P+  +L LE    +T    +   +D  E        HIY IGD   GR +    A
Sbjct: 1278537 AVGRQPNLGALGLE----NTKMRVENGQLDCDEYGRCKPYKHIYCIGDAT-GRQKTVNTA 1278373

Query: 372     IMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPL----EYGCVGLSEEEAVARHGQEHVEVY 427
                 AG+ +V  +FG S  L   +N  T + T +    E   +GLSE++  A  G  ++ V 
Sbjct: 1278372 QTAGQAVVDTMFGCSPKLAVSNNALTNIATDMFLEDEVASIGLSEKQCRAS-GIGYI-VA 1278199

Query: 428     HAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASY 487
                  YK L   +    A   +VKM+   +  + VLG+  +GP+AG V +  +L I    S 
Sbjct: 1278198 RLEYKHLTRPIV-MGAKDGFVKMIVTNDREKRVLGVRAVGPHAGSVVEVASLPILKNESV 1278022

Query: 488     AQVMRTVGIHPTCSEEVVK 506
                 +++    +P+    V++
Sbjct: 1278021 YTMLKHNPAYPSLVSGVIE 1277965



 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 87/366 (23%), Positives = 156/366 (42%), Gaps = 21/366 (5%)
 Frame = -2

Query: 158     KASFVDEHTVCGVAKGGKEIL-LSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKE 216
               +A+F   H +   +K  KE   ++AD+ I+ATG +PR   ++       +TSD I     
Sbjct: 1282519 RATFSSNHEIQCHSKRTKEFRSITADYFIVATGSKPRKHPYVAADGRLVMTSDHIM-RAP 1282343

Query: 217     SPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIP--LRGFDQQMSSMVIEHM-----A 269
                P   ++VGA  +  E A  +  +G     ++   P  L   D  +  M+   M      
Sbjct: 1282342 LPKSLVIVGAGVIGCEFASIIGRLGKTKVSIIDKAPHILPREDPDIVRMIESGMDRAGIV 1282163

Query: 270     SHGTRFLRGCAP-------SRVRR----LPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGR 318
                H    L    P       ++ R      P   +Q T  D TT K  T   +  L +IGR
Sbjct: 1282162 VHHNSDLYDMQPWEETVEEAKARHPADPAPQSGVQYTVMDRTTRKLTTFQVERALISIGR 1281983

Query: 319     VPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLL 378
               VPD   L +E   + T   +Q  + +  +    PHI+A+GD      +L  +     +L 
Sbjct: 1281982 VPDYSRLGIENTTLKTR-GSQLHVNEFGQCVGTPHIFAVGDAAT-HMQLVSMGEAQAKLA 1281809

Query: 379     VQRLFGGSSDLMD--YDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEF 436
               V  ++G    ++    + + +  F       VG +E +   + G  ++   ++ Y+ +  
Sbjct: 1281808 VDYIYGTEPKVVPNLTETMSSVAFLTRAVASVGYNESQCREK-GIAYIAARYS-YEVVSR 1281635

Query: 437     TVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGI 496
                VA  + ++ +VK++C  +P + +LG+  LG NA  +    AL I+ G     +   +  
Sbjct: 1281634 AVAAAN-TKGFVKIICADDPERRILGVRALGMNASTLVDIGALAIQNGQGVFDLAGRLTA 1281458

Query: 497     HPTCSE 502
               +P  S+
Sbjct: 1281457 YPAVSQ 1281440



 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 271    HGTRFLRGCAPSR-VRRLPDGQLQVTWEDSTTGKED 305
              H T  LR C PSR + R  DG+  V W   + G  D
Sbjct: 673371 HATACLRRCDPSRLILRKKDGRNDVLWHSRSPGAAD 673264


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 111/486 (22%), Positives = 201/486 (41%), Gaps = 14/486 (2%)
 Frame = -2

Query: 31     RGAAAGQRDYDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVG 90
              R   A  R +D+ V+GGG  G+A A  A +LG+K  +++            +GG     G
Sbjct: 818587 RTIVAWTRKFDVCVLGGGPAGIAAAVRAYELGKKACIIEESR---------IGGADFWNG 818435

Query: 91     CIPKKLMHQAALLGGLIQDAPNYGW--EVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQ 148
               +  K + + A          ++ +   V +        + +A+ N  ++        L 
Sbjct: 818434 ALQSKTLWEMAKFARYTMGNTSHRFMKSVIELPKIKHSNLIKAITNAAETRETQTLEVLA 818255

Query: 149    DRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPR-YPTHI-EGALEYGI 206
              +  ++  +   SF   ++V    K G E  + AD+ +IATG  PR +PT + +G + +  
Sbjct: 818254 NAHIEVLSGLGSFKTPNSVAVTKKDGTEETVEADYFVIATGAHPRPHPTAVADGKVVF-- 818081

Query: 207    TSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMM----RSIPLRGFDQQMSS 262
              TSDDI  ++  P   +++GA  +  E A      G+    ++    R +P+   D+ ++ 
Sbjct: 818080 TSDDIM-MQPLPKSIVIIGAGVIGCEFASIFANFGVTQVNIIEKSGRILPME--DEDIAL 817910

Query: 263    MVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIGRVPDT 322
               V   +   G  F    A      + DG+   T  D           D+ L +IGRVP  
Sbjct: 817909 FVQTLLEQKGVCFHHHSA-MESSSINDGKFHYTLRDVRDNSLHQHVTDSALVSIGRVPAI 817733

Query: 323    RSLNLEKAGVDTSPDTQKILVDSREATSV---PHIYAIGDVVEGRPELTPIAIMAGRLLV 379
                LNLE  G+    +     +D  E   +    HIYA GD    R  L  +A + GR  +
Sbjct: 817732 SKLNLEAIGITVKGNR----IDRDEFLRIEPHKHIYACGDTCT-RVALVNVAELEGRACI 817568

Query: 380    QRLFGGSSD---LMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEF 436
                ++    +    +  DN+ T +F   E   VGL+E++         +  Y   Y     
Sbjct: 817567 DHMYTPYPEEQLKLKLDNLSTIMFLDQEVAAVGLNEQQCQKMSISYKMARYSYEYVGRAL 817388

Query: 437    TVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGI 496
               +     ++ ++K+V   +    VLG+  +GP+A  + +  +L I    S   +     +
Sbjct: 817387 AMGN---TRGFIKLVVTNDKKMQVLGVRAVGPHASSIIELASLAIHNRDSAYDLRNLHAV 817217

Query: 497    HPTCSE 502
              +P  ++
Sbjct: 817216 YPAITQ 817199


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 38.5 bits (88), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = +2

Query: 5      AVALRGLGGRFRWRTQAVAGGVRGAARGAAAGQRDYDLLVVGGGSGGLACAKEAAQLGRK 64
              A A R   G   +         R +A   ++    +DLLV+GGG  GL  A +AAQ G +
Sbjct: 163928 ASAYRSANGAEHYHDSPAPRSSRWSALQRSSAADPFDLLVIGGGLTGLYTAVDAAQRGLR 164107

Query: 65     VAVVD 69
              VA+VD
Sbjct: 164108 VALVD 164122


>LmjF27_01_20050601_V5.2
               [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 399     VFTPLEYGCVGLSEEEAVARHGQEHV-EVYHAHYKPLEFTVAGRDASQCYVKMVCLREPP 457
               + TP  Y  VG S    +   GQ+ V +++H             DASQ YV ++ L  PP
Sbjct: 1058577 IVTPAVYPRVGESRHVDIQSTGQKSVCDIHHL------------DASQTYVLIIQLDSPP 1058434

Query: 458     QLVLGLHFLG 467
                 VL   F+G
Sbjct: 1058433 *AVLSWQFVG 1058404



 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 399     VFTPLEYGCVGLSEEEAVARHGQEHV-EVYHAHYKPLEFTVAGRDASQCYVKMVCLREPP 457
               + TP  Y  VG S    +   GQ+ V +++H             DASQ YV ++ L  PP
Sbjct: 1047447 IVTPAVYPRVGESRHVDIQSTGQKSVCDIHHL------------DASQTYVLIIQLDSPP 1047304

Query: 458     QLVLGLHFLG 467
                 VL   F+G
Sbjct: 1047303 *AVLSWQFVG 1047274



 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 399     VFTPLEYGCVGLSEEEAVARHGQEHV-EVYHAHYKPLEFTVAGRDASQCYVKMVCLREPP 457
               + TP  Y  VG S    +   GQ+ V +++H             DASQ YV ++ L  PP
Sbjct: 1034432 IVTPAVYPRVGESRHVDIQSTGQKSVCDIHHL------------DASQTYVLIIQLDSPP 1034289

Query: 458     QLVLGLHFLG 467
                 VL   F+G
Sbjct: 1034288 *AVLSWQFVG 1034259



 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 399     VFTPLEYGCVGLSEEEAVARHGQEHV-EVYHAHYKPLEFTVAGRDASQCYVKMVCLREPP 457
               + TP  Y  VG S    +   GQ+ V +++H             DASQ YV ++ L  PP
Sbjct: 1019799 IVTPAVYPRVGESRHVDIQSTGQKSVCDIHHL------------DASQTYVLIIQLDSPP 1019656

Query: 458     QLVLGLHFLG 467
                 VL   F+G
Sbjct: 1019655 *AVLSWQFVG 1019626



 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 399     VFTPLEYGCVGLSEEEAVARHGQEHV-EVYHAHYKPLEFTVAGRDASQCYVKMVCLREPP 457
               + TP  Y  VG S    +   GQ+ V +++H             DASQ YV ++ L  PP
Sbjct: 1007766 IVTPAVYPRVGESRHVDIQSTGQKSVCDIHHL------------DASQTYVLIIQLDSPP 1007623

Query: 458     QLVLGLHFLG 467
                 VL   F+G
Sbjct: 1007622 *AVLSWQFVG 1007593



 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 399    VFTPLEYGCVGLSEEEAVARHGQEHV-EVYHAHYKPLEFTVAGRDASQCYVKMVCLREPP 457
              + TP  Y  VG S    +   GQ+ V +++H             DASQ YV ++ L  PP
Sbjct: 995863 IVTPAVYPRVGESRHVDIQSTGQKSVCDIHHL------------DASQTYVLIIQLDSPP 995720

Query: 458    QLVLGLHFLG 467
                VL   F+G
Sbjct: 995719 *AVLSWQFVG 995690


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 39     DYDLLVVGGGSGGLACAKEAAQLGRKVAVVD 69
              DYD+++VGG   G   AK  +  GRKV +V+
Sbjct: 612762 DYDVIIVGGSIAGPVLAKALSDQGRKVLMVE 612670


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 31.2 bits (69), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
 Frame = +3

Query: 200    GALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQ 259
              G L+         WLK      LV  AS + + C+ F +G+G  ++  + S       + 
Sbjct: 551928 GTLQRAAMRSA*LWLKCCSRTALVKKASTIFVICSAFASGMGRRSSSFLTS-------RN 552086

Query: 260    MSSMVIEHMASHGTR---FLRGCAPSRVRRLPD---GQLQVTWEDSTTGKEDTGTFD 310
              ++  V+   ++  T    F    +P+R RR  +    ++  +W  S T    +  FD
Sbjct: 552087 LTGSVVTLFSTATTMWWIFFFSTSPNRPRRRSEPCASEIGASWRPSHTSPSASNAFD 552257


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -1

Query: 402    PLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVL 461
              PL   CV +    AVA   +E V    A ++PL F        +C   +  +  PP L L
Sbjct: 102527 PLPTPCVDMHATPAVAHDARECVPAGVARWRPLSFR------RECACVLARVPNPPPLSL 102366

Query: 462    GLHFLGP 468
               L   GP
Sbjct: 102365 SLCLRGP 102345


>LmjF02_01_20050601_V5.2
              [~/leish/curated/chr2/LmjF02_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 355714

 Score = 30.8 bits (68), Expect = 3.1,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
 Frame = -3

Query: 3      AMAVALRGLGGRFRWRTQAVAGGVRGA--------ARGAAAGQRDYDLLVVGGGSGGLA- 53
              A+ V  + LGG + WRT  V G V G          R AA       +L VG G+ G A 
Sbjct: 122417 AVRVWWQALGGWWWWRTLGVGGQVSGGRLCAGEACGRDAACTGSLRLVLAVGKGAHGCAG 122238

Query: 54     CAKEAAQLGRKVAV------------VDYVEPSPQGTRWGLGGTCVN 88
              C    A L  +VAV            V +  PS    R  +G  CV+
Sbjct: 122237 CWCAVAALRWRVAVGLDGARRC*WGAVSWTRPSCTRGRCAVGCACVS 122097



 Score = 30.4 bits (67), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
 Frame = -1

Query: 3      AMAVALRGLGGRFRWRTQAVAGGVRGA--------ARGAAAGQRDYDLLVVGGGSGGLA- 53
              A+ V  + LGG + WRT  V G V G          R AA       +L VG G+ G A 
Sbjct: 118309 AVRVWWQALGGWWWWRTLGVGGQVSGGRLCAGEACGRDAACTGSLRLVLAVGKGAHGCAG 118130

Query: 54     CAKEAAQLGRKVAV------------VDYVEPSPQGTRWGLGGTCVN 88
              C    A L  +VAV            V +  PS    R  +G  CV+
Sbjct: 118129 CWCAVAALRWRVAVGLDGARRC*WGAVSWTRPSCTRGRCAVGCACVS 117989



 Score = 30.0 bits (66), Expect = 5.2,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
 Frame = -3

Query: 3     AMAVALRGLGGRFRWRTQAVAGGVRGA--------ARGAAAGQRDYDLLVVGGGSGGLA- 53
             A+ V  + LGG + WRT  V G V G          R AA       +L VG G+ G A 
Sbjct: 98669 AVRVWWQALGGWWWWRTLGVGGQVSGGRLCAGEACGRDAACTGSLRLVLAVGKGAHGCAG 98490

Query: 54    CAKEAAQLGRKVAV------------VDYVEPSPQGTRWGLGGTCVN 88
             C    A L  +VAV            V +  PS    R  +G  CV+
Sbjct: 98489 CWCAVAALRWRVAVGLDGARRC*WGAVSWTRPSCTRGRCAVGCACVS 98349


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) #
Homo sapiens # Complete
         (754 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   232   7e-61
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   142   1e-33
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    72   1e-12
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    67   5e-11
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    54   4e-07
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    51   3e-06
LmjF02_01_20050601_V5.2 [~/leish/curated/chr2/LmjF02_01_20050601...    39   0.018
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    38   0.030
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    35   0.18 
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    35   0.19 
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    35   0.20 
LmjF16_01_20050601_V5.2 [~/leish/curated/chr16/LmjF16_01_2005060...    34   0.35 
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    34   0.42 
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    34   0.43 
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    33   0.68 
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    33   0.74 
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    33   0.75 
LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    33   0.82 
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    33   0.88 
LmjF12_01_20050601_V5.2 [~/leish/curated/chr12/LmjF12_01_2005060...    33   0.90 
LmjF10_01_20050601_V5.2 [~/leish/curated/chr10/LmjF10_01_2005060...    33   1.1  
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    33   1.2  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    33   1.2  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    33   1.3  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    32   1.4  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    32   1.4  
LmjF01_01_20050601_V5.2 [~/leish/curated/chr1/LmjF01_01_20050601...    32   2.2  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    32   2.4  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    32   2.7  
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    31   2.9  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    31   3.4  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    31   3.6  
LmjF03_01_20050601_V5.2 [~/leish/curated/chr3/LmjF03_01_20050601...    31   4.3  
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    30   5.6  
LmjF08_01_20050601_V5.2 [~/leish/curated/chr8/LmjF08_01_20050601...    30   8.8  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  232 bits (592), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 163/494 (32%), Positives = 257/494 (52%), Gaps = 14/494 (2%)
 Frame = +1

Query: 258    KLLQEDLAYDYDLIIIGGGSGGLSCA-KEAAILGKKVMVLDFVVPSPQGTSW--GLGGTC 314
              +  Q  ++  YDL+++G GSGGL      AA   KKV V+D  V +  G  +   LGGTC
Sbjct: 105649 RFSQRLMSRAYDLVVLGAGSGGLEAGWNAAATYKKKVAVVD--VQATHGPPFFAALGGTC 105822

Query: 315    VNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ-VRHNWETMTKAIQNHISSLNWGYRL 373
              VNVGC+PKKLM   A     + +S  FGWE N++ +  NW+T+  A    ++ +N  Y+ 
Sbjct: 105823 VNVGCVPKKLMVTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAAKNKVVNGINESYKS 106002

Query: 374    SLRE-KAVAYVNSYGEFVEHH-----KIKATNKKGQETYYTAAQFVIATGERPRYLGIQG 427
                 + + +++   +G   + H     K +  N    ET  T    +IATG  P  LG+ G
Sbjct: 106003 MFADTEGLSFHMGFGALQDAHTVLVRKSEDPNSDVLETLDT-EYILIATGSWPTRLGVPG 106179

Query: 428    DKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGF---GLDVTVMVR-SILLRGF 483
              D E+CITS++ F L   P + L VG  Y+A+E AG   G+   G  V +  R  ++LRGF
Sbjct: 106180 D-EFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGYVDLCYRGDLILRGF 106356

Query: 484    DQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVL 543
              D E+ + +   +  +G++      P  + + E GS           +GTE     Y+ V+
Sbjct: 106357 DTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNH-----VHFNDGTEED---YDQVM 106512

Query: 544    LAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQ 603
              LAIGR   ++ + L+K GV+   K+G + V+   +T+V  +YA+GD+  ++  LTPVAI 
Sbjct: 106513 LAIGRVPRSQTLQLDKAGVQ-TAKNGAVQVDAYSKTSVDNIYAIGDV-TNRVMLTPVAIN 106686

Query: 604    SGKLLAQRLFGASLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWP 663
               G   A+ +FG      D+  V   VF+    G CG++EE+A +    E + +Y + F P
Sbjct: 106687 EGAAFAETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAK--NHETVAVYESCFTP 106860

Query: 664    LEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDT 723
              L   ++G ++     +II ++     V+G H+LG +A E+ Q     MK G       +T
Sbjct: 106861 LMHNISGSKHKEFMIRIITDQ-PSGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFHNT 107037

Query: 724    IGIHPTCGEVFTTL 737
              IG+HPT  E   ++
Sbjct: 107038 IGVHPTSAEELCSM 107079



 Score = 32.3 bits (72), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
 Frame = -1

Query: 89     PAPQPPAFRFVSRPGRARSESETLERSPPQS-----PGPGKAGDAPNRRSGHVRGARVLS 143
              P P   A   VS    AR+   T  R    +     PGP  A   P   S   RGAR + 
Sbjct: 242779 PGPGRSAASPVSAVAMARAVDITAPRPAGSAGSM*LPGPTFAEVDPVGTSNETRGARPMI 242600

Query: 144    PPGRRARLS------SPGPSRSSEARE 164
               PGR  RL       SPGP  +  AR+
Sbjct: 242599 APGRFTRLVAASTS*SPGPGVARWARK 242519



 Score = 31.6 bits (70), Expect = 2.2,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 51/145 (35%), Gaps = 38/145 (26%)
 Frame = +2

Query: 52     SHARGGVG-GRGERLPRGFARVVR----VASEGSVRRPSGPVPAPQPPAFRFVSRPGR-- 104
              S ARGG   G G  LP G A VV+               GP     PP FR    P +  
Sbjct: 249281 SGARGGSNRGNGMALPPG-AHVVKSPYPFGGGLGAAGLMGPPAVAVPPGFRGKGPPAQML 249457

Query: 105    ----------------ARSESETLERSPP----QSPGPGKAGDAPNRRS----------- 133
                              A     +L  SPP     SPG   A   P  RS           
Sbjct: 249458 MMAGNQQTLMPPPSLLAAGGGYSLATSPPLSRTTSPGTMTAQPGPPGRSPIGPPHSFPQF 249637

Query: 134    GHVRGARVLSPPGRRARLSSPGPSR 158
                V G +++ PPG ++ +  PGPS+
Sbjct: 249638 AFVNGKQIMMPPGMKSLMGGPGPSQ 249712


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  142 bits (357), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 213/470 (45%), Gaps = 5/470 (1%)
 Frame = +1

Query: 268     YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKK-LMH 326
               YD+ +IGGG GG   A +AA LG K   ++            LGGTC+NVGCIP K L+H
Sbjct: 1324453 YDVTVIGGGPGGYVAAIKAAQLGLKTACIE--------KRGALGGTCLNVGCIPSKALLH 1324608

Query: 327     QAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSY 386
                  L   A  +  ++G    + V  +   M       + +L  G     ++  V Y    
Sbjct: 1324609 ATHLYHDAHANFAQYGLRGGENVTMDVSAMQAQKGKGVKALTGGVEYLFKKNKVTYYKGE 1324788

Query: 387     GEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLG-IQGDKEYCITSDDLFSLPYCP 445
               G FV  + IK     G+E    + + ++ATG  P  L  +  D++  ++S     L + P
Sbjct: 1324789 GSFVNPNTIKVKGLDGKEETLESKKTIVATGSEPTELPFLPFDEKVVMSSTGALDLDHVP 1324968

Query: 446     GKTLVVGASYVALECAGFLAGFGLDVTVM-VRSILLRGFDQEMAEKVGSYMEQHGVKFLR 504
                K +VVG   + LE     A  G +VTV+   S      D ++++ +   + +H    + 
Sbjct: 1324969 KKMIVVGGGVIGLELGSVWARLGAEVTVVEFASRCAATTDADVSKALTDALVKHEKMKIM 1325148

Query: 505     KFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKIGVKI 564
                   V V     GS   ++V  K  +  +T+E   + +L ++GR   T  +  E I +++
Sbjct: 1325149 TNTKV-VSGTNNGSSVTIEVEDKDGK-HQTLEA--DALLCSVGRRPHTTGLNAEAINLQM 1325316

Query: 565     NEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKCDYIN 624
                 + G I +ND  +TNVP VYA+GD++   P L   A + G   A+ L G      +Y  
Sbjct: 1325317 --ERGFICINDHFETNVPNVYAIGDVVNKGPMLAHKAEEEGVACAEILAGKP-GHVNYSV 1325487

Query: 625     VPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNT--CYAKIIC 682
               +P  ++T  E    G +EE+     KK  ++ Y    +P       +   T   + K++ 
Sbjct: 1325488 IPGVIYTNPEVAQVGETEEQV----KKRGID-YKVGKFPFSANSRAKAVGTEDGFVKVVT 1325652

Query: 683     NKFDHDRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 732
               +K   DR++G  I+   AGE+      AM+ G + + L  T   HPT  E
Sbjct: 1325653 DK-KTDRILGVQIVCTAAGEMIAEPTLAMEYGASSEDLGRTCHAHPTMSE 1325799



 Score = 34.3 bits (77), Expect = 0.37,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
 Frame = +2

Query: 65     LPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGK 124
              LPR   R  R  + G  R P G  PAP           G AR+ S T +R  P +P P +
Sbjct: 568838 LPRPRLRCWRGCANGRRRVPFGDEPAPT---------CGPARAPSRTRQRYAPAAPTPSQ 568990

Query: 125    A---------------GDAPNRRSGHVRGARVLSPPGRRA----RLSSPGPSRSSEAREE 165
              +               G A   R+     + VL+   R A    R SS  PSR+   R+ 
Sbjct: 568991 SASS*AISAAARGWWQGYAHQPRTRARTPSLVLATAYRAAGSPPRRSSWSPSRAPGTRKP 569170

Query: 166    LRRHLVGLIERSR 178
              L   L GL  R R
Sbjct: 569171 LDGLLSGLPHRDR 569209



 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 48/127 (37%), Gaps = 1/127 (0%)
 Frame = -2

Query: 38     NGPMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFR 97
              +GP  G       +  A  G+     R  RG+A      SE     P+ P   P      
Sbjct: 346029 HGPARGR*AVASVVRVAGAGLAACRGRPCRGWASHGPGPSEARHTLPACPAALP------ 345868

Query: 98     FVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP-GP 156
                  P R +    T+    P +PG G  G       G VRGA VLSP     +L+ P G 
Sbjct: 345867 ----PSRLQPRHSTIWCGDPPTPGSGTHG-------GAVRGALVLSPASAPHQLTRPHGG 345721

Query: 157    SRSSEAR 163
                +S AR
Sbjct: 345720 DAASLAR 345700



 Score = 32.3 bits (72), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
 Frame = -3

Query: 38     NGPMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFR 97
              +GP  G       +  A  G+     R  RG+A      SE     P+ P  A +PP   
Sbjct: 379772 HGPARGR*AVASVVQVAGAGLAACRGRPCRGWASHGPGPSEARHTLPACPA-ALRPP--- 379605

Query: 98     FVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP-GP 156
                  P R +    T+    P +PG G  G       G VRGA VLSP     +L+ P G 
Sbjct: 379604 ----PSRLQPRHSTIWCGDPPTPGSGTHG-------GAVRGALVLSPASAPHQLTRPHGG 379458

Query: 157    SRSSEAR 163
                +S AR
Sbjct: 379457 DAASLAR 379437



 Score = 30.4 bits (67), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 75    VASEGSVRRPSGPVPAPQ--PPAFRFVSRPGRARSESETLERSPP 117
             V   G+  RP GP    Q   PA R  SR    RSE + LER PP
Sbjct: 19093 VEPRGNSYRP*GPCVDGQLGAPALRQPSRLRLIRSEGDNLERDPP 18959



 Score = 29.6 bits (65), Expect = 9.7,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +2

Query: 76     ASEGSVRRPSGPVPAPQPPAF--RFVSRPG--RARSESETLERSPPQSPGPGKAGDAPNR 131
              A   S R    P  A  PPA   R   RP   R RS   +L    P+S  PG +     R
Sbjct: 720278 AQRTSPRPARAPY*ASDPPAL*LRHPCRPAASRHRSGCRSLGPCSPKSSLPG*S--QIWR 720451

Query: 132    RSGHVRGARVLSPPGRRARLSSPGPSRS 159
                G      + +PPG R R  + GPS S
Sbjct: 720452 *LGETARPAI*APPGMRGRCPASGPSGS 720535


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 106/453 (23%), Positives = 185/453 (40%), Gaps = 15/453 (3%)
 Frame = -2

Query: 268    YDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGCIPKKLMHQ 327
              +D+ ++GGG  G++ A  A  LGKK  +++            +GG     G +  K + +
Sbjct: 818560 FDVCVLGGGPAGIAAAVRAYELGKKACIIE---------ESRIGGADFWNGALQSKTLWE 818408

Query: 328    AALLGQALC--DSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNS 385
               A   +      S +F     +  +     + KAI N   +        L    +  ++ 
Sbjct: 818407 MAKFARYTMGNTSHRFMKSVIELPKIKHSNLIKAITNAAETRETQTLEVLANAHIEVLSG 818228

Query: 386    YGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPR-YLGIQGDKEYCITSDDLFSLPYC 444
               G F   + +  T K G E    A  FVIATG  PR +     D +   TSDD+   P  
Sbjct: 818227 LGSFKTPNSVAVTKKDGTEETVEADYFVIATGAHPRPHPTAVADGKVVFTSDDIMMQPL- 818051

Query: 445    PGKTLVVGASYVALECAGFLAGFGL-DVTVMVRS-ILLRGFDQEMAEKVGSYMEQHGVKF 502
              P   +++GA  +  E A   A FG+  V ++ +S  +L   D+++A  V + +EQ GV F
Sbjct: 818050 PKSIVIIGAGVIGCEFASIFANFGVTQVNIIEKSGRILPMEDEDIALFVQTLLEQKGVCF 817871

Query: 503    LRKFIPVMVQQLEKGS--PGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTRKIGLEKI 560
                         +E  S   GK     +        + V ++ L++IGR     K+ LE I
Sbjct: 817870 HHH------SAMESSSINDGKFHYTLRDVRDNSLHQHVTDSALVSIGRVPAISKLNLEAI 817709

Query: 561    GVKINEKSGKIPVNDVEQTNV-PYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLE- 618
              G+ +  K  +I  ++  +     ++YA GD    +  L  VA   G+     ++    E 
Sbjct: 817708 GITV--KGNRIDRDEFLRIEPHKHIYACGDTCT-RVALVNVAELEGRACIDHMYTPYPEE 817538

Query: 619    --KCDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRE---- 672
                K    N+ T +F   E    GL+E++  ++     +  Y        +   GR     
Sbjct: 817537 QLKLKLDNLSTIMFLDQEVAAVGLNEQQCQKMSISYKMARY-------SYEYVGRALAMG 817379

Query: 673    NNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQ 705
              N   + K++       +V+G   +GP+A  + +
Sbjct: 817378 NTRGFIKLVVTNDKKMQVLGVRAVGPHASSIIE 817280


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 49/84 (58%)
 Frame = +1

Query: 173    LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 232
              LI + +VV+FS  +CP+ +R KE+  SL  +  V E DQ+D+G  ++  + +  N  TVP
Sbjct: 321256 LITQHKVVVFSWVHCPYCSRAKEILKSLAKDIQVYECDQMDNGEELRTQILQAYNHDTVP 321435

Query: 233    NIFVNKVHVGGCDQTFQAYQSGLL 256
               IF+N   +GGC       +SG L
Sbjct: 321436 AIFINGEFIGGCSDLQAIQKSGEL 321507



 Score = 31.6 bits (70), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
 Frame = +2

Query: 44     CGRAGDPISHARG------GVGGRGERLPRGFARVVRVASEGSVRRPSGPV----PAPQP 93
              CGRAG  ++  R         GGR  RL     R        + RRP GP      +   
Sbjct: 178799 CGRAGRELAEGRPRQVPRPQPGGRASRLSAAGLRPAVQPRGAAARRPQGPEREG*RSQDC 178978

Query: 94     PAFRFVSRPGRARSESETLERSPPQSPGPGKAG 126
                     RPGR   +    ER  P+ PGPG  G
Sbjct: 178979 RPGEGAERPGR*ARQGSASER--PRLPGPGAGG 179071



 Score = 30.8 bits (68), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
 Frame = -2

Query: 79     GSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVR- 137
              GS R      P+P P A  + SRP +  S S     S P+  G  +     + R GH R 
Sbjct: 246901 GSRRCSLARPPSPPPCALAYPSRPTKGPSASRRGFVSWPR--GISRRAPCSSTRCGHHRE 246728

Query: 138    ------GARVLSPPGRRARLSSPGPSRSSE 161
                     A+    P  R R S+P P+   E
Sbjct: 246727 RSSTPCSAQTDGAPSPRPRASTPCPAAPCE 246638


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
 Frame = +3

Query: 170    LVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARV-QEVLSEITNQ 228
              L  ++ R+R+V+ S +YC  ST++K L   L      LE+D + +G  V QEV++  T  
Sbjct: 416784 LDSMLRRNRIVLISATYCQFSTKLKMLLIELKHRFVSLEIDIIPNGREVFQEVVAR-TGV 416960

Query: 229    KTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262
               TVP +F+N  ++GG D     Y    L + L++
Sbjct: 416961 HTVPQVFLNGKYLGGYDDLIALYHKRELSETLEK 417062



 Score = 37.7 bits (86), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 65     LPRGFA--RVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARS 107
              +P  F   R   V++  S  RP GPVP+ QPP  R VS P  ARS
Sbjct: 630361 MPSSFLVHRTAHVSARASTGRPRGPVPSQQPPLLRRVS-PSYARS 630492



 Score = 31.6 bits (70), Expect = 2.7,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 8/119 (6%)
 Frame = +1

Query: 45     GRAGDPISHARGGVGGRG--ERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVS-- 100
              G A +P+ H R   GG    ER     A+  R A       PS   P PQP   R     
Sbjct: 501295 GGAAEPVRHCRIVCGGARVYERREHAPAQHGRPADLYPAVHPSA*QP-PQPHLLRLSQAS 501471

Query: 101    ----RPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPG 155
                  R GR  +      R  P   G G        R  H      L+ PGRRAR   PG
Sbjct: 501472 FRSQRAGRGAAFHSQDTRDHPAGTGEG--------RENH------LAAPGRRARALRPG 501606



 Score = 31.2 bits (69), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 260    LQEDLAYD-YDLIIIGGGSGGLSCAKEAAILGKKVMVLD 297
              LQ   A D +DL++IGGG  GL  A +AA  G +V ++D
Sbjct: 164006 LQRSSAADPFDLLVIGGGLTGLYTAVDAAQRGLRVALVD 164122



 Score = 30.4 bits (67), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
 Frame = +2

Query: 649    YKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIG-FHILGPNAGEVTQGF 707
              Y K   E+ H   WPL W  + RE               D V+G F  +    GE   GF
Sbjct: 504308 YTKMPREVIHKTVWPLAWLYSQREM-------------QDSVVGLFRAIRYEGGEDQAGF 504448

Query: 708    AAAMKC-----------GLTKQLLDD-TIGIHPTCGEVFT-TLEITKSSGLDITQKGC 752
                 + C            +T+Q + D T+  H   G V T TL    S   D+  K C
Sbjct: 504449 GYELLCWWSKAQNTYSKSITQQAMRDMTVPPHILEGYVRTLTLCGEWSRAYDVAMKVC 504622



 Score = 30.0 bits (66), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 27/58 (46%)
 Frame = -3

Query: 83     RPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGAR 140
              RP+ P P PQ P  R  +     RS S  L  SP  +P  G+ G  P R   H RG R
Sbjct: 571603 RPASPPPRPQLPCRRART---TTRSASRLLSMSPTSAPRGGR-G*HP-RYQPHARGTR 571445



 Score = 29.6 bits (65), Expect = 8.7,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 51/145 (35%), Gaps = 20/145 (13%)
 Frame = -3

Query: 45     GRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVR--RPSGPVPAPQPPAFRFVS-- 100
              GR+ D  +     +GG G  L   FA V   A  G VR   P   VP P    F   S  
Sbjct: 482437 GRSDDETT-----IGGPGAHLQGSFA*VTHSARGGGVRLATPVSNVPRPSRQTFSSASPK 482273

Query: 101    -----------RPGRARSESETLERSPPQSPGP-----GKAGDAPNRRSGHVRGARVLSP 144
                         R  R+   S  L  +P Q+        GK G    R  G  R +R  S 
Sbjct: 482272 DVCSKVDADVMRAARSAFRSPLLHLTPVQNQTKSKGHNGKQGRQAGREGGAERCSRGSSQ 482093

Query: 145    PGRRARLSSPGPSRSSEAREELRRH 169
               G      +PG  + + A    RRH
Sbjct: 482092 RG------TPGKKKHA*ACVHARRH 482036


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 118/469 (25%), Positives = 193/469 (41%), Gaps = 32/469 (6%)
 Frame = -3

Query: 269     DLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWG---LGGTCVNVGCIPKKLM 325
               DL +IGGG GG++ A  A   GK V ++       +G   G   LGGT      +P K+M
Sbjct: 1279350 DLCVIGGGPGGIAAAMRAIGYGKSVCIV-------EGGRVGGADLGGT------VPSKMM 1279210

Query: 326     HQAALLGQALCDSRKFGWEYNQQVRH-----------NWETMTKAIQNHISSLNWGYRLS 374
               ++ A    +L      G E+ + +               E +T+ ++   +     YR  
Sbjct: 1279209 YEIAHFAASLT-----GPEFVRDLVKPDEMQSIVDGIPSERITQLLRKTCTGKEREYRAF 1279045

Query: 375     LREKAVAYVNSYGEFVEHHKIKA-TNKKGQETYYTAAQFVIATGERPR-YLGIQGDKEYC 432
               L    V  +     F   ++I   T   G+     A   VIATG  PR +   + D    
Sbjct: 1279044 LEASGVQLIEGKATFANPNEIDVHTEGTGEYRSLQADNVVIATGAIPRSHAFAKCDHNRI 1278865

Query: 433     ITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVG 492
               + S  LF +P  P   +V+GA  +  E A   A  G     +V     R   +E  E V 
Sbjct: 1278864 LNSTSLFEMP-IPASMVVIGAGAMGCEVASMFAKLGRTKVRLVDKA-PRILPKE-DEDVA 1278694

Query: 493     SYMEQHGVKFLRKFIPVMVQQ------LEKGSPGKLKVLAKSTEG-TETIEGVYNTVLLA 545
               SY+++H    +R+   V++ Q      LE G       L     G  ET        ++A
Sbjct: 1278693 SYVQRH---LIRR--GVVIHQGCRLFDLEAGEEDCRYSLRDIFSGDIETYHA--ERAMVA 1278535

Query: 546     IGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPY--VYAVGDILEDKPELTPVAIQ 603
               +GR      +GLE   +++  ++G++  ++  +   PY  +Y +GD    + +    A  
Sbjct: 1278534 VGRQPNLGALGLENTKMRV--ENGQLDCDEYGRCK-PYKHIYCIGDA-TGRQKTVNTAQT 1278367

Query: 604     SGKLLAQRLFGAS----LEKCDYINVPTTVFTPLEYGCCGLSEEKAIEV---YKKENLEI 656
               +G+ +   +FG S    +      N+ T +F   E    GLSE++       Y    LE 
Sbjct: 1278366 AGQAVVDTMFGCSPKLAVSNNALTNIATDMFLEDEVASIGLSEKQCRASGIGYIVARLEY 1278187

Query: 657     YHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGFHILGPNAGEVTQ 705
                H L  P+   V G ++   + K+I       RV+G   +GP+AG V +
Sbjct: 1278186 KH-LTRPI---VMGAKDG--FVKMIVTNDREKRVLGVRAVGPHAGSVVE 1278058



 Score = 49.7 bits (117), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
 Frame = -2

Query: 389     FVEHHKIKATNKKGQE-TYYTAAQFVIATGERPR-YLGIQGDKEYCITSDDLFSLPYCPG 446
               F  +H+I+  +K+ +E    TA  F++ATG +PR +  +  D    +TSD +   P  P 
Sbjct: 1282510 FSSNHEIQCHSKRTKEFRSITADYFIVATGSKPRKHPYVAADGRLVMTSDHIMRAPL-PK 1282334

Query: 447     KTLVVGASYVALECAGFLAGFG-LDVTVMVRS--ILLRGFDQEMAEKVGSYMEQHGVKF- 502
                 ++VGA  +  E A  +   G   V+++ ++  IL R  D ++   + S M++ G+   
Sbjct: 1282333 SLVIVGAGVIGCEFASIIGRLGKTKVSIIDKAPHILPRE-DPDIVRMIESGMDRAGIVVH 1282157

Query: 503     ----LRKFIP--VMVQQLEKGSPG--------KLKVLAKSTEGTETIEGVYNTVLLAIGR 548
                   L    P    V++ +   P         +  V+ ++T    T +      L++IGR
Sbjct: 1282156 HNSDLYDMQPWEETVEEAKARHPADPAPQSGVQYTVMDRTTRKLTTFQ--VERALISIGR 1281983

Query: 549     DSCTRKIGLEKIGVKINEKSGKIPVNDVEQ-TNVPYVYAVGD 589
                    ++G+E   +K   +  ++ VN+  Q    P+++AVGD
Sbjct: 1281982 VPDYSRLGIENTTLKT--RGSQLHVNEFGQCVGTPHIFAVGD 1281863



 Score = 32.0 bits (71), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 90     APQPPAFRFVSRPGRARSESETLERSPPQSPG---PGKAGDAPNRRSGHVRGARVLSPPG 146
              AP P A R   R G A    E    +P  S      G++  +P RRS     +R+ S PG
Sbjct: 411008 APPPRAVRH-PRHGGASHTRER*RGAPASSTA*HAEGQSRYSPRRRSARRLPSRLRSSPG 411184

Query: 147    RRARLSSP 154
              RRA  S+P
Sbjct: 411185 RRAAASAP 411208



 Score = 29.6 bits (65), Expect = 10.0,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 36/90 (40%)
 Frame = +1

Query: 65      LPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGK 124
               +P G           ++RRP  P      P  R  SRP   ++ +         S G   
Sbjct: 1148605 MPHGLGESAGQPQARALRRPCAP------PVCR-ASRPPSPQAAAS-------HSTGWTL 1148742

Query: 125     AGDAPNRRSGHVRGARVLSPPGRRARLSSP 154
               +   P      +RGARV+ PP RR  LSSP
Sbjct: 1148743 STWVPGGLDAAIRGARVMPPP-RRLCLSSP 1148829


>LmjF02_01_20050601_V5.2
              [~/leish/curated/chr2/LmjF02_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 355714

 Score = 38.9 bits (89), Expect = 0.018,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 54/154 (35%), Gaps = 9/154 (5%)
 Frame = +1

Query: 27     PLILDMCPHLNNGPMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPS- 85
              PL+L +  H  + P            H RG       R PR   R  RVA  G+ R    
Sbjct: 254425 PLLLSLLSHQCHNP-----------PHPRGATHPPDHR-PR--TRPHRVARSGTRRAWPR 254562

Query: 86     ------GPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGA 139
                    G  PAP PP      RP  A     + +R    S  PG+ G  P  R    R  
Sbjct: 254563 RRRSHRGTAPAPNPPTHTHKDRPTAAPIHPTSRQRDGWASTRPGRTGTPPTIRRAQTRPP 254742

Query: 140    RVLSPPGRRARLSSPGPSRSSEAREE--LRRHLV 171
                ++P   R      GP R    R+    R HLV
Sbjct: 254743 PRVAPTQHR----HSGPDRRHPQRQPALTRPHLV 254832



 Score = 33.9 bits (76), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +2

Query: 66     PRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGR-ARSESETLERSPPQSPGPGK 124
              PR   R  + AS    RR     P+P PP     S P R AR+      RS PQ+P PG+
Sbjct: 120380 PRWLMRHAQPASHQPPRRARALQPSPAPP-----SDPWR*ARN------RSAPQAPSPGR 120526

Query: 125    AGDAPNRRSGHVRGARVLSP-PGRRAR 150
              A   P           + +P PG  A+
Sbjct: 120527 APAPPEHEHSLELAGTIDTPAPGASAQ 120607



 Score = 32.0 bits (71), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
 Frame = +3

Query: 60    GRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRA---------RSESE 110
             GR      G   +    + G+   P+G  PA   PA R ++RP            R    
Sbjct: 55803 GRSSAHHPGLLSIASTRAGGADAVPAGR-PAHDRPALRELARPRHFWRQGHGCC*RCPDS 55979

Query: 111   TLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRSSEARE 164
                  PP +    +A   P RR+   +     SPP R    ++P  ++SS   E
Sbjct: 55980 PPSALPPAAQSAERAAPPPRRRTAVSQDCSAASPPARPQGAAAPTEAQSSHTVE 56141


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 38.1 bits (87), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
 Frame = +2

Query: 79     GSVRRPSGPVPAPQPP-AFRFVSRPGRARSESETLERSPPQSPGPG---KAGDAPNRRSG 134
              G  R PS P+ +P  P A R        R  S T+E + P +        +GD  +    
Sbjct: 231872 GQARNPSAPLYSPSSPRAVREARYEPAHRPISTTVEVTYPTTSAAAMLPSSGDGTHPSLS 232051

Query: 135    HVRGARVLSPPGRRARLSSPGPSR--------SSEAREELRRHL 170
                + +R L+PP R + +SS  PS         + + R +LR+H+
Sbjct: 232052 PPQASRQLAPPSRLSIVSSSTPSTMFASNLEPAPQPRRQLRKHV 232183



 Score = 37.0 bits (84), Expect = 0.059,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 16/115 (13%)
 Frame = -1

Query: 5      HRLVSGKRRMHLTSRPVAS--THSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGGRG 62
              HRL  G+R  +   R +A+     PL   +  HL  GP + CG  G   S A G   GR 
Sbjct: 276457 HRLSRGRRCRYERGRFLATEQVRQPLTQPLAAHLERGPASQCGWNG---SRACGSRRGRA 276287

Query: 63     E--RLPRGFARVVRVASEGSVR------------RPSGPVPAPQPPAFRFVSRPG 103
              E  R PR      +    G  R            RP+  VP   PP+ R+    G
Sbjct: 276286 EMQRTPRKATTARQARWSGGCREPLSSTAAARMHRPAVRVPPQGPPSTRWRKTAG 276122


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 35.4 bits (80), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -1

Query: 80      SVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGA 139
               S R+P   + APQPP +  V  P R R          PQS  P + G+A  R S   RG+
Sbjct: 1826647 SRRQPPDSLSAPQPPQYALVVLP-RDR---------*PQSQAPLRFGEALRRLSALPRGS 1826498

Query: 140     RVLSPPGRRARLS-SPGPSRSSE 161
               R  +   + AR + + GPS S +
Sbjct: 1826497 RTSAE*RQSARAAVAAGPSHSCQ 1826429



 Score = 32.0 bits (71), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
 Frame = +2

Query: 83     RPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRS-GHVR---- 137
              RP   +    PPA R  + P   R  S     +PP+SP   +A    NR + G VR    
Sbjct: 111503 RPRTTLVPQSPPAHRLPASPWHCRRCSHDEPAAPPRSPPEMQADPLTNRVADGQVRIGRA 111682

Query: 138    ---GARVLSPPGRRARLSSPGPSRSSEAREELR 167
                   RV + P RR+  S      S+   E +R
Sbjct: 111683 AHHHLRVHALPSRRSLRSLLAQQVSTRLLELMR 111781



 Score = 30.8 bits (68), Expect = 4.2,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
 Frame = +1

Query: 67     RGFARV-VRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKA 125
              RGF R     A  G     +GP        FRFVS P R      T    PP       A
Sbjct: 547333 RGFTRSPAPRARTGPTASETGPAKPTHTGHFRFVSTPTR-----RTQSAQPPGMQATNAA 547497

Query: 126    GDAPNRRSGHVR-----GARVLSPPGRRAR 150
                   +R G+       G  V SPP  R R
Sbjct: 547498 AHDQEQRQGNANLESHPGPLVTSPPAARLR 547587



 Score = 30.0 bits (66), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 33/63 (52%)
 Frame = +1

Query: 100    SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRS 159
              +R  R R E+E  +RS  ++     AG+      G+V G R  S PG  A  +SP PSR 
Sbjct: 327778 TRLQRCRQENEVRQRSLMETMAM-PAGE----NGGNVDGGRA-SNPGTAAGSASPTPSRI 327939

Query: 160    SEA 162
              SEA
Sbjct: 327940 SEA 327948



 Score = 29.6 bits (65), Expect = 8.7,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = +1

Query: 90     APQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRS---GHVRGARVLSP-P 145
              AP P A  F  R GRA ++ +     PP     G AG     RS   GH  G    SP P
Sbjct: 730417 APSPHACPFALRAGRAPAQ*K-----PPSKAQSGSAGSTLEDRSW*CGHPSGHPAQSPLP 730581

Query: 146    GRRARLSSPGPSRSSEAREELRR 168
              G  +  +   P+R   +    RR
Sbjct: 730582 GFPSLDTPSNPARQRRSSPASRR 730650


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 35.4 bits (80), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
 Frame = +2

Query: 71     RVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGP-----GKA 125
              R++  +    +RRP+ P+  PQPP       P R      T  R+PP +  P     G  
Sbjct: 145805 RLLPPSEPSGMRRPAAPIRCPQPP-----RPPSRVGEAVRTRARTPPSA*WPRRRHHGHQ 145969

Query: 126    GDAPNRRSGH-VRGARVLSPPGRRARLSSPGPSRSSEAREELRR 168
              G    R   H   G        R  RL S  P RS+ A E   R
Sbjct: 145970 GSPCTRPGAHSCAGQLRSRRRRRPRRLYSLPPRRSTRAEERATR 146101



 Score = 30.0 bits (66), Expect = 6.8,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 54/150 (36%), Gaps = 15/150 (10%)
 Frame = +2

Query: 6      RLVSGKRRMHLTSRPVASTHSPLILDMCPHLNN-----GPMTGCGRAG-DPISHARGGVG 59
              R V    R HL  R   S H PL   + PH+       GP   C  +G DP   A    G
Sbjct: 375017 RGVRAAYRAHLHRRRTQSAHGPLCSHINPHVLQPRQRLGPQ--CAASGADPTEAASH--G 375184

Query: 60     GRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSE---SETLERSP 116
              G GE LP   +RV              P         R   +P   R+E   +E L   P
Sbjct: 375185 GAGE-LPLARSRV--------------PDDERNTEHTRHRRKPTHLRAEEVLAEPLHPRP 375319

Query: 117    PQSPGPGKAGDAPNR------RSGHVRGAR 140
                 PG   AG   +R      R+ H  GAR
Sbjct: 375320 GHGPGSRGAGG*SHRPYHWKARAAHHDGAR 375409



 Score = 29.6 bits (65), Expect = 9.4,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 31/73 (42%)
 Frame = -3

Query: 97     RFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGP 156
              R   R  R R  S+     P  SP PG+A DAP R+ G        +P   RAR  S GP
Sbjct: 393870 RSEQRLQRGR-RSQPTSACPSHSPRPGRA-DAPRRQRG--------APD--RARQPSTGP 393727

Query: 157    SRSSEAREELRRH 169
                SS       RH
Sbjct: 393726 PLSSPRHAACHRH 393688


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 35.0 bits (79), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 23/133 (17%)
 Frame = +3

Query: 130    NRRSGHVRGARVLSPPGRRARLSSPGPSRS------------------SEAREELRRHLV 171
              +R +GH     V  PPG+R R+SSPG  R                    EA  + RR L 
Sbjct: 122982 SRLAGHGYLIAVRGPPGKRVRVSSPGTHRLRKRVRPLT*QRKLRAQSWGEATGDERRRLQ 123161

Query: 172    GLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQ-----VDDGARVQEVLSEIT 226
               L +    ++       H T    +   L +E   ++LD      VD GAR+  V S   
Sbjct: 123162 HLRQHPLRLL-------HGTLQGFVAHLLALEVQAMQLDHPCKDDVDRGARISRVRSAAD 123320

Query: 227    NQKTVPNIFVNKV 239
                +  P + V +V
Sbjct: 123321 ALREAPPLIVTRV 123359



 Score = 30.0 bits (66), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 37/112 (33%), Gaps = 3/112 (2%)
 Frame = -1

Query: 84     PSGPVPAPQPPAFRFVSRPGRARSESETLERSP---PQSPGPGKAGDAPNRRSGHVRGAR 140
              PS  +   + P    V R     + +    R P   P +P    A   P  R     GA 
Sbjct: 506651 PSPTLAEHRAPPPIHVGRSSHTHTHTRVAARHPLSHPSTPPASHATHPPTPRRSPAPGAS 506472

Query: 141    VLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVVIFSKSYCPHSTR 192
                 PP      + P P  S +A  E R    G    +R + +    C H  R
Sbjct: 506471 PFPPPSGCGTQALPAPVGSVKAEGETRPSRAG----TRPIAWMARACVHGRR 506328


>LmjF16_01_20050601_V5.2
              [~/leish/curated/chr16/LmjF16_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 714659

 Score = 34.3 bits (77), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 61     RGERLPRGFA--RVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQ 118
              RGE +    +  RV ++  + +VR  +  +P+P PP   F+        E++TL R  P 
Sbjct: 556956 RGEHVTSNISTHRVRKIGRDNTVRGNTSTLPSPAPPHLHFLQACAHTGGEADTLLRIRPT 557135

Query: 119    S 119
              S
Sbjct: 557136 S 557138



 Score = 33.1 bits (74), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 64    RLPRGFAR-VVRVASEGSVRRPSGPVPAPQPPA 95
             RLPR F R V R   EG  RR +GP P   PPA
Sbjct: 35437 RLPRTFRRHVRRQGEEGVPRRATGPHPDSVPPA 35535


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 34.3 bits (77), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
 Frame = -2

Query: 87     PVPAPQPPAFRFVS---RPGRARSESETLERSPP-QSPGPGKAG--DAPNRRSGHVRGAR 140
              P  AP P   R  S   RP R R  S    R+P   +P   +AG  +  + R+G   G R
Sbjct: 691014 PRSAPSPAQTRASSHHARPSRVRHRSRRACRAPR*SAPSARRAG*SNGWSARAGTCHGCR 690835

Query: 141    VLS---PPGRRARLSSPGP 156
                +   PP R  R+S+P P
Sbjct: 690834 TQAGRAPPHRHGRMSAPAP 690778



 Score = 32.7 bits (73), Expect = 0.98,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 21/123 (17%)
 Frame = -2

Query: 66     PRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSR------PGRAR--SESETLERSPP 117
              PRG A  +   +  S+     P+P P+ PA   VS       P  +R  + +  L+R  P
Sbjct: 580554 PRGPAVSLATGAPPSLAAAVTPLPRPRGPALPSVSP*AYPVGPAASRL*AAAGALQR*AP 580375

Query: 118    QSPGPGKAGDAPNRRSGHVRGARVLSPPG-------------RRARLSSPGPSRSSEARE 164
              +SP    A     R SG +   R L PPG             +R R S P  +R S    
Sbjct: 580374 RSPREAPA-IGRRRSSGQLGDRRALPPPGQSQHSHRRRHHPLQRRRRSPPWQTRQSPRHR 580198

Query: 165    ELR 167
               LR
Sbjct: 580197 WLR 580189


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 34.3 bits (77), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%)
 Frame = -2

Query: 103    GRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPS 157
              GRAR E+E     PP+     + G   + R G     R+ SPP  RA +SS GPS
Sbjct: 416220 GRAREEAE----KPPEHT---RVGGRTHARDGSDESPRLYSPPLSRAGISSAGPS 416077



 Score = 33.5 bits (75), Expect = 0.66,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%)
 Frame = +1

Query: 103    GRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPS 157
              GRAR E+E     PP+     + G   + R G     R+ SPP  RA +SS GPS
Sbjct: 483322 GRAREEAE----KPPEHT---RVGGRTHARDGSDESPRLYSPPLSRAGISSAGPS 483465



 Score = 33.5 bits (75), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
 Frame = -3

Query: 84     PSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSP---GPG-----KAGDAPNRRSGH 135
              P+G +  PQP A+R    P R    + T    PPQ+     P      + G  P+     
Sbjct: 972623 PAGCLALPQPGAWRC---PSRVPGAAPTTPSVPPQNGRL*APRVRTRVRVGGDPSGPHAQ 972453

Query: 136    VRGARVLSPPGRRARLSSPGPSRSSEAREELRRH 169
               R A V +  G+  +  +P P+ S EA +  R+H
Sbjct: 972452 QRPAPVAATCGQAVQARTPRPATSPEAADHHRKH 972351



 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +3

Query: 75      VASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDA-PNRRS 133
               V + GS R      P    P F   + P  AR  S TL RSP  S  PG A    P  R 
Sbjct: 1041309 VFAAGSSRDTLAAPPMHSRPLFADCASP*SAR--SATLPRSPLPSTKPGIAEPLFPRHRG 1041482

Query: 134     GHVRGARVLSPPGRRARLSSPGP---SRSS 160
               G   G+    P  +R+    P P   SRSS
Sbjct: 1041483 GGTAGSTPAPPSSQRSAPRGPTPHAESRSS 1041572



 Score = 30.0 bits (66), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 24/62 (38%)
 Frame = -3

Query: 33      CPHLNNGPMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQ 92
               CP    G  T CG A       R G  GR  R  R    + R   E    RPS P+P   
Sbjct: 1607828 CPPARGGIGT-CGTA------PRSGAAGRCRRYLRRGPPLRRSGGEACCTRPSPPLPGAA 1607670

Query: 93      PP 94
               PP
Sbjct: 1607669 PP 1607664



 Score = 29.6 bits (65), Expect = 10.0,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +1

Query: 40      PMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFV 99
               P       G+ +S   G     G    RG AR+    ++G  RR    +  P+PPA+R  
Sbjct: 1653367 PEDAAAGVGEAVSRNGGAHWCEGVLDLRGRARLC-AGAQGEARRRETALRVPEPPAYRSG 1653543

Query: 100     SRPG 103
               SR G
Sbjct: 1653544 SRDG 1653555


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 33.5 bits (75), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
 Frame = -3

Query: 3      HVHRLVSGKR--RMHLTSRPVASTHSPLI--LDMCPHLNNGPMTGCGRAGDPISHARGGV 58
              H   LVSG+   R+H +   +A+TH+P I   D    L++G     GR G P  H   GV
Sbjct: 129075 HALHLVSGRLN*RLHPSVSAIANTHTPCIRFTDHDVALDDGE----GRRGLP--HEHMGV 128914

Query: 59     GGRGERLPRGF-ARVVRVASEGSVRRPSGPVPAPQPPAFR 97
                R ER P    A ++     GSV+R + P P P     R
Sbjct: 128913 RLRKERRPSFLDAPLLPTQRMGSVKRTT-PRPPPAHACIR 128797



 Score = 32.3 bits (72), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 37/104 (35%), Gaps = 20/104 (19%)
 Frame = -1

Query: 63     ERLPRGFARVVRVASEGSVRRP-------------SGPVPAPQPPAFRFVSRPGRARSES 109
              +R+P         A  GS RRP              GP P   PP       P  AR   
Sbjct: 481697 QRVPSATEHDPTSARHGSARRPHHPTKSSSRHSSRQGPRPTIYPPLPHSRPHPHHARPHL 481518

Query: 110    ETLERSPPQSPGP----GKAGDAPNRR---SGHVRGARVLSPPG 146
                  R  P SP      G+AGD P  R   + H+ G  VL+  G
Sbjct: 481517 PHPTRGGPGSPTSRQREGQAGDTPESRRCSAHHMDGTSVLAVAG 481386



 Score = 30.8 bits (68), Expect = 4.6,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
 Frame = -1

Query: 64     RLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPG------RARSESETLERSPP 117
              R+P         A  GS RRP  P  +    A R   RP        +R       R  P
Sbjct: 451034 RVPSATEHDPTSARHGSARRPHHPTKSSSRHASRQGPRPTIYPPLPHSRPHLPHPTRGGP 450855

Query: 118    QSPGP----GKAGDAPNRR---SGHVRGARVLSPPG 146
               SP      G+AGD P  R   + H+ G  VL+  G
Sbjct: 450854 GSPTSRQREGRAGDTPESRRCSAHHMDGTSVLTVAG 450747


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 33.5 bits (75), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = -2

Query: 84     PSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLS 143
              PS P   P+  + +  SRP        T   + P S GP  +  AP R +   RGA    
Sbjct: 583319 PSDPTEPPRTSSAKSSSRPA-------TAPVARPSSAGPAASSQAPERAATSARGA---- 583173

Query: 144    PPGRRARLSSPG 155
              P G   R   P 
Sbjct: 583172 PAGELTRAPLPA 583137



 Score = 32.3 bits (72), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 66    PRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQS 119
             PR F+R  RV   G+ RRP  P   P P A    +        S ++ R PP++
Sbjct: 57660 PR-FSRAARVDRVGASRRPRSPCTPPSPDAAAATTHRRHLARPSTSIARRPPRA 57502



 Score = 30.0 bits (66), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -1

Query: 89    PAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRR 148
             PA +PP ++  S P      S    R   + P P +   AP R     R  R  SPP   
Sbjct: 65796 PARRPPPWQARS-PQSPEPPSHPHRRRRARLPSPKRRPSAPRRSDSTPRRRRCQSPPSAL 65620

Query: 149   ARLSSP 154
              R ++P
Sbjct: 65619 DRSAAP 65602


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 33.1 bits (74), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
 Frame = -3

Query: 53     HARGGVGGRGERLPRGFARV--VRVASEGSVRR-----PSGPVPAPQPPAFRFVSRPGRA 105
              H RGG   +G   P   AR   ++  S+G V R     P+   PAP PP+ R + R GRA
Sbjct: 137515 HRRGGGPHQGRPAPDDPARTSALQRPSQGRVLRGVYAGPAAESPAPSPPSARALVRQGRA 137336



 Score = 32.3 bits (72), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = +1

Query: 19    RPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASE 78
             RPV    +PL+LD  P    G +  C  A  P    RG +   G+R  R  A+ +    E
Sbjct: 45913 RPVPPAWTPLLLDRAPL--RGWLRCCPVARCPSRRQRGAMCRDGDRRARKPAQQLGQTKE 46086

Query: 79    GSVRRPSGPVPAPQ 92
                R  S P P P+
Sbjct: 46087 SRRRGSSAPRPQPR 46128



 Score = 29.6 bits (65), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 77     SEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSP 120
              ++ S R  S     PQPP      +PG+  SE+  L  +PP SP
Sbjct: 444525 TQRSSRSSSFTYRIPQPPREPRFPQPGKPHSEAR*LGAAPPPSP 444656



 Score = 29.6 bits (65), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 114    RSPPQSPGPGKAGDAPNRRSGHVRGAR----VLSPPGRRAR 150
              R   ++P P + G  P  R  H+R AR     ++PP R AR
Sbjct: 519060 RVASRAPSPAETGSPPRCRQRHLRSARSARSSVAPPSRSAR 519182


>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 33.1 bits (74), Expect = 0.82,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
 Frame = -3

Query: 70     ARVVRVASEGSVRR---PSGPVPAPQPPAFRFVSRPGRARSESETLE-RSPPQSPGPGKA 125
               R  R      +RR    S P   PQP      S P  A S ++     +  Q+P P  +
Sbjct: 227641 GRACRSGPRAWIRRLCAASSPPTDPQPSPRGCTSLPSEAGSAADRRRCTTGRQTPRPADS 227462

Query: 126    GDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRSSE 161
               DAP RR       R  + P    RL++P P  S E
Sbjct: 227461 HDAPRRR-------RSPAAPASARRLNAPLPPLSHE 227375



 Score = 31.6 bits (70), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 8/128 (6%)
 Frame = +3

Query: 49     DPISHARGGVGGRGER---LPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRA 105
              D +   R  +  R  R   L     +V R  + GS R+P  P+P P  P      R  +A
Sbjct: 117255 DELQWCRAALSERDARVAELEAALEKVTRACAAGSSRQPQQPLPEPLQP------RTPKA 117416

Query: 106    RSESETLERSP-PQSPGPGK----AGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRSS 160
                 S     SP  ++P P +    + +A    S  V  A  ++  G+R   + P PS ++
Sbjct: 117417 SRNSTAAHGSPAARTPHPLRLQRSSREAAAGESREVIAA--VNDSGKREVSADPVPSATA 117590

Query: 161    EAREELRR 168
                  E  R
Sbjct: 117591 SVTAESMR 117614


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 33.1 bits (74), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
 Frame = -2

Query: 73      VRVASEGSVRRPSGPVPAPQPP-----AFRFVSRPGRARSESETLERSPPQSPGPGKAGD 127
               +RVA  G+VRR +   P P PP     A    S P    S S    RSP         G 
Sbjct: 1027679 IRVA--GTVRRRTSKAPTPPPPLLERAAAELASGPPLPLSASNAALRSPASV----STGT 1027518

Query: 128     APNRRS-----GHVRGARVLSPPGRRARLSSPGPSRSS 160
               AP+ R+      HV    V + P     LS P  SR S
Sbjct: 1027517 APSVRTV**RRCHVSSGAVTASPLGAVALSVPPFSRHS 1027404



 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 54/150 (36%), Gaps = 25/150 (16%)
 Frame = -3

Query: 45      GRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGR 104
               GR   P    R  V   G+RL    +   R+       R   P P   PP   + +   R
Sbjct: 1526833 GRRVSPSHRFRAAVRQNGQRLRPQSSA*TRLFQS----RQDSPPPTSGPPRHHYAAPSPR 1526666

Query: 105     ARSES---ETLERSPPQSPGPGKA----GDAPNRRSG-----HVRGARVLS--------- 143
                RS +   ++  R  P   G G+A       P  RS        R  R+L+         
Sbjct: 1526665 RRSAAHCADSPTRDAPPRAGGGRAQPPFAAPPQSRSDAWHCRRRRPDRILAQS*RPLA*M 1526486

Query: 144     ----PPGRRARLSSPGPSRSSEAREELRRH 169
                    P +  R S+P P+R+   R + RRH
Sbjct: 1526485 RCAHAPPQGWRRSNPAPTRARRTRSQ*RRH 1526396


>LmjF12_01_20050601_V5.2
              [~/leish/curated/chr12/LmjF12_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 675347

 Score = 33.1 bits (74), Expect = 0.90,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = -2

Query: 46     RAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVP--APQPPAFRFVSRPG 103
              R+  P S   G + GR  R PR   R   +    + RR  GP P  A  PPA    +   
Sbjct: 406183 RSAPPRSAPPGALAGR-PRSPRSTVRR*TLRGRAATRRACGPTPTNAAIPPAAHRAAP-- 406013

Query: 104    RARSESETLERSPPQSPGPGKAGDA 128
              R R   +   R P   P P + G A
Sbjct: 406012 RTRWPEQGRTRGPRSGPSPCRVGPA 405938



 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = -1

Query: 46     RAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVP--APQPPAFRFVSRPG 103
              R+  P S   G + GR  R PR   R   +    + RR  GP P  A  PPA    +   
Sbjct: 476330 RSAPPRSAPPGALAGR-PRSPRSTVRR*TLRGRAATRRACGPTPTNAAIPPAAHRAAP-- 476160

Query: 104    RARSESETLERSPPQSPGPGKAGDA 128
              R R   +   R P   P P + G A
Sbjct: 476159 RTRWPEQGRTRGPRSGPSPCRVGPA 476085



 Score = 30.8 bits (68), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
 Frame = +1

Query: 82     RRPSGPVPAPQPPAFRFVSRP-----------GRARSESETLERSPPQSPGPGKAGDAPN 130
              RRP    P   PP+ R                 RAR     + R  PQ PG G +   P 
Sbjct: 111868 RRPFDVCPRAPPPSTRTFG*GSGRKRGRRHELKRARLTET*VRRRHPQQPGVGPSSTTPI 112047

Query: 131    RRSGHVRGARVLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVVIFSKSYCPHS 190
               + G +                 P P R  +AR    R       R +V    + Y PH+
Sbjct: 112048 NQQGAL-----------------PTPLREPQARSRCARQSSQPCHRLQVAFKYRRYRPHA 112176


>LmjF10_01_20050601_V5.2
              [~/leish/curated/chr10/LmjF10_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 570864

 Score = 32.7 bits (73), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
 Frame = -3

Query: 45     GRAGDPI-----SHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFV 99
              GR GD I      H      GR  RLP G      V + GS  R  G   AP+PPA    
Sbjct: 337054 GRQGDGIHAVSHQHPLSSHRGRAARLPIGC-----VPATGS--RARGAHQAPRPPAGARP 336896

Query: 100    SRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGH 135
              S P R   E   L     Q   PG +     R+  H
Sbjct: 336895 SLPHRGGPEHAGLLCVEAQRQNPGGSHSVVRRQQAH 336788


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = -1

Query: 103    GRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSP-GPSRSSE 161
               RA + +ET  RSPPQ   P   G      S   R A     P  RAR   P G    + 
Sbjct: 111858 ARASACAETRSRSPPQWTRPPHRGARAASLSRRTRAASRGLSPAPRARQRGPCG*CACAV 111679

Query: 162    AREELRRH 169
              AR E R H
Sbjct: 111678 ARHECRTH 111655



 Score = 30.8 bits (68), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 49/130 (37%)
 Frame = +1

Query: 39     GPMTGCGRAGDPISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRF 98
              G + GC    D  +H R G GG  E   R +         G + R +    +P   ++R+
Sbjct: 506560 GTLVGCSVRVD--THKRRGGGGTREHPRRAWLHA------GRLLRITPSSRSPSVSSWRW 506715

Query: 99     VSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSR 158
                 P R+      L   P  S  PG    A   R  H+R  R     GRR  LS   P  
Sbjct: 506716 ---PARSAGTMRCLPCRPCTSSAPGCGAAAALPRDLHLRQWRPGRARGRRQGLSR*CPPA 506886

Query: 159    SSEAREELRR 168
               + A  E RR
Sbjct: 506887 LASASLETRR 506916



 Score = 29.6 bits (65), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 50     PISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARS 107
              P SH     G  G  LP   +  + +    S+  P+GP+   +PP  R V   GR  S
Sbjct: 269281 PSSHGHAA-GLAGSSLPPSLSLRLALQRSTSLETPAGPINRIRPPRLRTVGEGGRVGS 269111


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 32.7 bits (73), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +1

Query: 109    SETLERSPPQSPGPGKAGDAPN--RRSGHVRGARVLSPPGRRARLS---SPGPSRS 159
              S+T  R PPQ     +   A +  RR  H RGAR+LS  G R   S   +P P R+
Sbjct: 495160 SQTPGRHPPQPRYTMRRATASDTWRRPSHTRGARMLSSRGDRRPSSPSCAPAPDRT 495327



 Score = 32.3 bits (72), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +1

Query: 109    SETLERSPPQSPGPGKAGDAPN--RRSGHVRGARVLSPPGRRARLS---SPGPSRS 159
              S+T  R PPQ     +   A +  RR  H RGAR+LS  G R   S   +P P R+
Sbjct: 501529 SQTPGRHPPQPRYTMRRATASDTWRRPSHTRGARMLSSRGDRRPSSPSCAPAPDRT 501696



 Score = 31.6 bits (70), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
 Frame = -2

Query: 76     ASEGSVRRPSGPVPAPQPPAFRFVSRPGRAR------SESETLERSPPQSPGPGKAGDAP 129
              AS  S   P+GPV  P P       R           SE   L R+PP  P P     A 
Sbjct: 337919 ASPASALTPAGPVTGPHPRRAMQSERHANTAMRPTQPSEHSPLPRAPPTDPHPAGRLTAT 337740

Query: 130    NRRSGHVRGARVLSPPGRRARLSSPGPSRSSEAREELRR 168
                      GA   SP  R     SP PS   E R   RR
Sbjct: 337739 PPLCRAPPGA--FSPQRRCGGAGSPHPSTQCEGRG*DRR 337629



 Score = 31.2 bits (69), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 50     PISHARGGVGGRGERLPRGFARVVRVASEGSVRRPSGPV-PAPQPPAFRFVSRP 102
              P+  ARG  G R +RLP    R +R AS      PS  V P+   P  ++V  P
Sbjct: 106994 PLLEARGAAGRRTKRLPAATPRRMRTASPPFPTTPSAAVFPSRSRPLTQWVVSP 106833



 Score = 31.2 bits (69), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
 Frame = +2

Query: 76     ASEGSVRRPSGPVPAPQPPAFRFVSRPGRAR------SESETLERSPPQSPGP-GKAGDA 128
              AS  S   P+GPV  P P       R           SE   L R+PP  P P G+   A
Sbjct: 266483 ASPASALTPAGPVTGPHPRRAMQSERHANTAMRPTQPSEHRPLPRAPPTDPHPAGRLTAA 266662

Query: 129    PNRRSGHVRGARVLSPPGRRARL----SSPGPSRSSEAREELRR 168
              P             +PPG  +       SP PS   E R   RR
Sbjct: 266663 P---------PLCRAPPGAFSPQGWVGGSPHPSTQCEGRG*DRR 266767


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 32.7 bits (73), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -2

Query: 265    AYDYDLIIIGGGSGGLSCAKEAAILGKKVMVLD 297
              +YDYD+II+GG   G   AK  +  G+KV++++
Sbjct: 612768 SYDYDVIIVGGSIAGPVLAKALSDQGRKVLMVE 612670


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 32.3 bits (72), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
 Frame = -2

Query: 20     PVASTHSPLILDMCPHLNNGPMTG-CGRAGDPISHARGG----VGGRGERLPRGFARVVR 74
              P  +  + L+   C H + G +TG  G      SH R G      GR    PRG  +  R
Sbjct: 882173 PGCTVVASLLFISCAHRSWGSLTGVAGHCCACRSHPRRGWWRTTAGRTHAGPRGTLQSTR 881994

Query: 75     VASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLER 114
                S    RR      AP P       R  RAR  + T  R
Sbjct: 881993 TPSSQRCRRARKRANAPTP------RRQTRARQSATTWRR 881892



 Score = 30.8 bits (68), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -3

Query: 131    RRSGHVRGARVLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVVIFSKSYCPHS 190
              RR G V G RV     + ARL +P     S+   +  R LVG   RS  V+     C   
Sbjct: 928930 RRGGKVEGVRVKREERQSARLDNPKGGEVSQIPSDCWRRLVGQ-GRSACVLLYHRLCSKH 928754

Query: 191    TRV 193
              T V
Sbjct: 928753 TAV 928745



 Score = 30.0 bits (66), Expect = 7.8,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
 Frame = +3

Query: 4      VHRLVSGKRRMHLTSRPVASTHSPLILDMCPHLNNGPMTGCGRAGDPIS---HARGGVGG 60
              + R ++G     +  R  A+T     L +C  L+     GCG A   +S   H R  V G
Sbjct: 471582 MRRGIAGIGVCAVDGRGGAATPGSCRLSLCSCLSPASSGGCGGADSALSEGGHCRECVCG 471761

Query: 61     RGERLPR---------GFARVVRVASEGSVRRPSGPVPAPQPPAF-RFVSRPGRARSESE 110
                 RLP          G    VRV    SV          +P A  R VSR   A  ++E
Sbjct: 471762 MRGRLPSPKKPWNSLAGVLVGVRVTHAASVLED-------RPVALGRLVSRLSEAAYKAE 471920

Query: 111    TLERSPPQSPGPGKAGDA 128
               L        G  + GDA
Sbjct: 471921 MLRTGKRDRDGEDRRGDA 471974



 Score = 29.6 bits (65), Expect = 8.4,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = -1

Query: 119    SPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERSR 178
              +P P  A DA    +  VR    +  P R A LSS G  RS +A E+  +   GL+ RSR
Sbjct: 478995 TPAPPDAVDAWRPHTRTVRRGGWVVVPRRGAPLSSAGYQRSPKALEQDNKK-TGLLTRSR 478819


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 32.3 bits (72), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
 Frame = -1

Query: 85     SGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRR----------SG 134
              S  +P+P PP       P  AR  S  + R+ P++P  G+  DA + R          SG
Sbjct: 292046 SASLPSPTPPRGACAPAPCPARCSSFPI-RAAPEAPA-GRHLDAGDHRSSRRATPAAASG 291873

Query: 135    HVRGARVLSPPGR-RARLS---SPGPSRSSEAREEL 166
              H+ G R   PP   R++ S   +P PS +S AR  L
Sbjct: 291872 HL-GTRHAEPPASLRSQASCYRAPAPSGASPARRSL 291768



 Score = 32.0 bits (71), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
 Frame = -2

Query: 59     GGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQP-----------PAFRFVSRPGRARS 107
              G    RLP  + R +R       +RP  P     P            A RF   PGR +S
Sbjct: 629605 GEESNRLPPSYPRSLRTPFHAETKRPGAPRLDLSPRGLQGAEGWDRAAGRFPGHPGRPKS 629426

Query: 108    ESETLERSPPQSPGPGKAGDAPNRRSGH 135
                  +    P  PGP    D     +G 
Sbjct: 629425 PFWWIRAKIPSCPGPTATFDPAAPTAGQ 629342


>LmjF01_01_20050601_V5.2
             [~/leish/curated/chr1/LmjF01_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 268984

 Score = 31.6 bits (70), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = -1

Query: 102   PGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRSSE 161
             P RA  +  T   SP Q+    ++     R     R  R L PP R  R SSP P++++ 
Sbjct: 93760 PHRATGQRST--TSPTQTAQRSRSCAVTPRNCTRDRRKRHLRPPSRLRRCSSPLPTQTTS 93587

Query: 162   AREELRRHLVG 172
              R  +   L G
Sbjct: 93586 CRPLIS*RLCG 93554


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 31.6 bits (70), Expect = 2.4,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
 Frame = +3

Query: 90     APQPPAFRFVSRPGRARSESETLERSPPQ-SPGPGKAGDAPNRRSGHVRGARVLSPPGRR 148
              A  PP F   S P R   E       P   S GPG  G      SG  RGA VL PP  R
Sbjct: 497082 ATLPPLFLIFSGPPRCSLEDPLFFSKPFSCSLGPGAKG------SGLARGAPVLLPPSCR 497243

Query: 149    ARLSSPGPSRSSEAREELRRH 169
                      +R    R+   RH
Sbjct: 497244 VA-KERSTARPHTHRQYTHRH 497303



 Score = 30.8 bits (68), Expect = 4.8,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
 Frame = -1

Query: 46     RAGDPISHARGGVGGRGERL-PRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGR 104
              R+ D    +R G G R +R  PRG +R    A+    RR     PA    A +  SRP R
Sbjct: 435332 RSVDRPCRSRRGPGARPQRRDPRGTSRFPTAATTRRQRRQFALAPAGPALACQ-QSRPRR 435156

Query: 105    AR-------SESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPS 157
                       S  + L R P QSP P +   +  RR GH         PGR AR  S    
Sbjct: 435155 CGALLALRISRRQCLCR-PCQSPRPARWRPSLRRRCGHTPPHH---QPGR*ARHGSRRRC 434988

Query: 158    RSSEAREEL 166
              R+S AR   
Sbjct: 434987 RNSSARRRF 434961


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 31.6 bits (70), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 4/123 (3%)
 Frame = +1

Query: 55     RGGVGGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLER 114
              R G    G R  +  +     A   + +R S  V  P+ P  R  +RP    +     +R
Sbjct: 599884 REGEKKEGRRRAQTKSEKRMAAQSNAAQRGSPAVCCPRGPRTRLAARPWSVSTARHNAKR 600063

Query: 115    SPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRA----RLSSPGPSRSSEAREELRRHL 170
              S   S  PG     P R     + AR     G R     R+   G SR + + ++   H+
Sbjct: 600064 SWSASRSPGSFARVPPRLIWQKKSAR---REGERDAGGWRIRKQG*SRGNTSEDDTDGHM 600234

Query: 171    VGL 173
              + L
Sbjct: 600235 LSL 600243



 Score = 30.8 bits (68), Expect = 4.3,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 38/96 (39%)
 Frame = -1

Query: 68     GFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGD 127
              G   + R  S  S R+PS P  AP     R+ S  G     ++    +  + P P +   
Sbjct: 155011 GSGSMTRHESSISRRKPSTPRIAPPCWLCRWRSEGGECSR*AQRR*SAGHRLPSPHRTHT 154832

Query: 128    APNRRSGHVRGARVLSPPGRRARLSSPGPSRSSEAR 163
              AP   +G     R   PP R  R  SP   RS+  R
Sbjct: 154831 APRLAAG-TTTQRWRLPPSRCKRWPSPQTGRSASLR 154727


>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 31.2 bits (69), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
 Frame = -2

Query: 5      HRLVSGKRR----MHLTSRPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGG 60
              HR+  G RR     H  S  +A+ H P  L   P  +  P         P+ H     GG
Sbjct: 384350 HRVARGSRRHTPAQHCASSGIAARHLPRALPTQPPRSAAP--------HPLPHR---AGG 384204

Query: 61     RGERLPRGFARVVRVASEGSV 81
              R  RLPR      RV S+G V
Sbjct: 384203 RVVRLPRQRRLPPRVGSDGGV 384141



 Score = 31.2 bits (69), Expect = 3.2,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 93     PPAFRFVSRPGRARSESETLERSPPQSPGP--GKAGDAPNRRSGHVRGARVLSPPGRRAR 150
              P  F    RP RA        R+PP +PG   G +  +P +   H R  R  S P RR+ 
Sbjct: 256453 PGTF*MTRRPMRAPVSPPWARRTPPIAPGRCCGSSDRSPKK---HPR*QR--SGPRRRSH 256617

Query: 151    LSSPGPSRSSEA 162
              L++P  S  S +
Sbjct: 256618 LAAPAASGQSRS 256653



 Score = 30.8 bits (68), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
 Frame = -1

Query: 5      HRLVSGKRR----MHLTSRPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGG 60
              HR+  G RR     H  S  +A+ H P  L   P     P         P+ H     GG
Sbjct: 315078 HRVARGSRRHTPAQHCASSGIAARHLPRALPTQPPRRAAP--------HPLPHR---AGG 314932

Query: 61     RGERLPRGFARVVRVASEGSV 81
              R  RLPR      RV S+G V
Sbjct: 314931 RVVRLPRQRRLPPRVGSDGGV 314869



 Score = 30.8 bits (68), Expect = 4.7,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
 Frame = +1

Query: 5      HRLVSGKRR----MHLTSRPVASTHSPLILDMCPHLNNGPMTGCGRAGDPISHARGGVGG 60
              HR+  G RR     H  S  +A+ H P  L   P     P         P+ H     GG
Sbjct: 344680 HRVAQGSRRHTPAQHCASSGIAARHLPRALPTQPPRRAAP--------HPLPHR---AGG 344826

Query: 61     RGERLPRGFARVVRVASEGSV 81
              R  RLPR      RV S+G V
Sbjct: 344827 RVVRLPRQRRLPPRVGSDGGV 344889


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 31.2 bits (69), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = -2

Query: 74     RVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQS---PGPGKAGDAPN 130
              R ASEG    P+ PVP  Q  A R       +  E   L ++PP+S   P P +A +A  
Sbjct: 699231 RQASEGECG*PT-PVPNHQALARRRTHTRQASEGERPLLAQAPPRSAVAPHPTQARNALK 699055

Query: 131    RRSGHVRGARVLSPPGRRA 149
                 G  R   +   P R A
Sbjct: 699054 GVKGRTRALPISHRPTRHA 698998



 Score = 30.0 bits (66), Expect = 8.1,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
 Frame = +3

Query: 58     VGGRGERLPRGFARVVRVASE-----GSVRRPSGPVPAPQPPAFRFVSRPGRARSESETL 112
              VG R  R PR   RV+    E     G VR    P P   PPA     R GR R     +
Sbjct: 492579 VGVRETRAPR---RVLPRQDEAVPIGGGVRVGIAP-PRLVPPAGADARRSGRPRRTCNPV 492746

Query: 113    ERSPPQSPGPGKAGD------------APNRRSGHVRGARVL--SPPGRRARLSS 153
                 P ++P    +GD            +   R GH R   VL  S P RR R+ +
Sbjct: 492747 PLPPNEAPPAVSSGDPYAGGAQSEHASSKGGRRGHRRSTAVLARSSPRRRCRIQA 492911


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 31.2 bits (69), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -1

Query: 66     PRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPG 121
              PR  +R +    +     P  P P+PQP  + + + P R       L  +   +PG
Sbjct: 243859 PRKPSRSINTREKKKKTEPMSPAPSPQPSFYAYTTTPPRGCLGPSPLAHAHMHAPG 243692


>LmjF03_01_20050601_V5.2
             [~/leish/curated/chr3/LmjF03_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 384518

 Score = 30.8 bits (68), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 81    VRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPG 123
             +   +G  P+P PP  RF ++     +E+  L  S  QSP P 
Sbjct: 64069 INNSTGDTPSPAPPPARFSAQYPPVANEASGLSASGHQSPPPA 64197



 Score = 29.6 bits (65), Expect = 9.0,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 42/102 (41%)
 Frame = +1

Query: 69     FARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDA 128
              FA + R A    V  P G VP+P     R  S P   ++E   L R PP+    G A D 
Sbjct: 235606 FAHLQRCAER--VGAPPGHVPSPHR*GPR--SSP---QAEPHALPRLPPERARGGDAHD- 235761

Query: 129    PNRRSGHVRGARVLSPPGRRARLSSPGPSRSSEAREELRRHL 170
                    HVRG   L    R  R+S  G         +LRRHL
Sbjct: 235762 ---DGMHVRGHARLPVRHRALRVSEQGRD------VQLRRHL 235860


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 30.4 bits (67), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +3

Query: 83     RPSGPVPAPQPPAFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVL 142
              R +G      P   R V+  GR  + ++   R P      G+   +P+R     R  R  
Sbjct: 340512 RGAGSCVVAVPDGSRVVATVGRFVARAQ---RLPSSRRNVGRGAPSPSRLLAEPRRPRSA 340682

Query: 143    SPPGRRARLSSPG--PSRSSEAR 163
              SPP    R SS G  P+ SS AR
Sbjct: 340683 SPPCALGRRSSIG*RPATSSTAR 340751


>LmjF08_01_20050601_V5.2
              [~/leish/curated/chr8/LmjF08_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 574972

 Score = 29.6 bits (65), Expect = 8.8,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
 Frame = +3

Query: 59     GGRGERLPRGFARVVRVASEGSVRRPSGPVPAPQPPAFRFVSRPGRARSE--SETLERSP 116
              GG      +G  R  R  S G   +   P   P PP      R GRAR       +  SP
Sbjct: 431490 GGSTSSEKQGI*RTGRRCSGGRDAQRGAP---PAPP------RQGRARERHLPSKVRWSP 431642

Query: 117    PQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRS 159
              P++  P +      R     + AR L PP  RA   S GP RS
Sbjct: 431643 PRARPPVQQHGGKRRVWHPAQCARALPPPPARA---SAGPPRS 431762


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000065_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Pan troglodytes # Complete
         (201 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    76   2e-14
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    71   6e-13
LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...    32   0.35 
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    29   2.3  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    27   9.6  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/187 (32%), Positives = 78/187 (41%)
 Frame = -2

Query: 13     SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVL 72
              S+Y F     +  +P  LG  +G  LLI NVAS  G T   Y     L  +    G +VL
Sbjct: 234658 SIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 73     GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 132
               FPCNQF  QE    EE+  S    R    F+  F + EK  VNG   HPL+ +L+    
Sbjct: 234481 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTCK 234317

Query: 133    APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 192
                    T L                V WNF  FLV  DG  + R++      +IE  +  
Sbjct: 234316 GIL--GTTL----------------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLP 234191

Query: 193    LLSQGPS 199
              LL    S
Sbjct: 234190 LLQAAAS 234170



 Score = 75.1 bits (183), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/182 (32%), Positives = 77/182 (42%)
 Frame = -1

Query: 13     SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVL 72
              S+Y F     +  +P  LG  +G  LLI NVAS  G T   Y     L  +    G +VL
Sbjct: 236984 SIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 73     GFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALP 132
               FPCNQF  QE    EE+  S    R    F+  F + EK  VNG   HPL+ +L+    
Sbjct: 236807 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTCK 236643

Query: 133    APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA 192
                    T L                V WNF  FLV  DG  + R++      +IE  +  
Sbjct: 236642 GIL--GTTL----------------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLP 236517

Query: 193    LL 194
              LL
Sbjct: 236516 LL 236511



 Score = 75.1 bits (183), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 80/189 (42%)
 Frame = -3

Query: 6      LAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLG 65
              L+  +  S+Y F     +  +P  LG  +G  LLI NVAS  G T   Y     L  +  
Sbjct: 239331 LSPQSTMSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYK 239155

Query: 66     PRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFA 125
                G +VL FPCNQF  QE    EE+  S    R    F+  F + EK  VNG   HPL+ 
Sbjct: 239154 HLGFMVLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYH 238990

Query: 126    FLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTID 185
              +L+          T L                V WNF  FLV  DG  + R++      +
Sbjct: 238989 YLKNTCKGIL--GTTL----------------VKWNFTAFLVDKDGHAVCRFAPGATVSE 238864

Query: 186    IEPDIEALL 194
              IE  +  LL
Sbjct: 238863 IEKKLLPLL 238837


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 75/176 (42%)
 Frame = -3

Query: 1       MCAARLAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNEL 60
               +C   LA   A SV+ +SA  +  G+ V L    G   LI NVAS       +   +NE+
Sbjct: 1227211 VCLWDLAVGMA-SVFTYSA--VQNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEV 1227041

Query: 61      QRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGA 120
               Q+  G R   VL FPC QF +QE   N EI    ++    G   P   +F++  V G+ A
Sbjct: 1227040 QQAYGSRRFTVLAFPCAQFANQEPLNNTEIA---QWCEDLGLLFP---VFDRVNVKGSSA 1226879

Query: 121     HPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRR 176
                PLF  LR    AP                         WN+ K+L    GVP R+
Sbjct: 1226878 DPLFQMLRAQQGAP------------------------LWNYTKYLCDRSGVPRRK 1226783


>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score = 32.0 bits (71), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 132    PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSR 179
              P+ +   TAL T P+L++ SP+ R+ V  +F   L G   V L  + R
Sbjct: 205014 PSAAQRGTALSTSPQLVSTSPIARSYVVQSFSSHLPGESTVLLGAHHR 205157


>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 29.3 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -2

Query: 120     AHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPL 174
               AHP  A LRE +PA +  A  +    + I  +  CR  V W  E+       VPL
Sbjct: 1261164 AHPHVALLREHIPAQAATAAYVEQQGRAIH-AGGCRCVVFWQVEQLQRAQGHVPL 1261003


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 26.9 bits (58), Expect = 9.6,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 14     VYAFSARPLAGGEP-VSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQ-RRLGPRGLVV 71
              VY FS+ P  GG P VS   LR  V+   +VAS     + ++ Q+   +  R   R    
Sbjct: 514857 VYVFSS-PFLGGRPGVSSAMLRVLVMRCRDVASARAPRMSEHRQLKNCEPSRPTQR*RAR 515033

Query: 72     LGFPCNQFGHQENAKNEEILNSLKYVR 98
               G PC  +G  +NA +  + + L+  R
Sbjct: 515034 AGAPCRLYG-TKNALDGSVKSRLETER 515111


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000066_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Pan troglodytes # Complete
         (190 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    71   5e-13
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    57   7e-09

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 1/184 (0%)
 Frame = -2

Query: 7      SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR-LVVLG 65
              S YD      D +  D    +G  +LI NVAS  G T   +     L  ++     +VL 
Sbjct: 234658 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 234479

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F +++K  VNG++EHP + YLK+    
Sbjct: 234478 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 234320

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 234319 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 234188

Query: 186    LKVA 189
              L+ A
Sbjct: 234187 LQAA 234176



 Score = 68.9 bits (167), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
 Frame = -1

Query: 7      SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR-LVVLG 65
              S YD      D +  D    +G  +LI NVAS  G T   +     L  ++     +VL 
Sbjct: 236984 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 236805

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F +++K  VNG++EHP + YLK+    
Sbjct: 236804 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 236646

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 236645 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 236514

Query: 186    LK 187
              L+
Sbjct: 236513 LQ 236508



 Score = 68.2 bits (165), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
 Frame = -3

Query: 7      SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR-LVVLG 65
              S YD      D +  D    +G  +LI NVAS  G T   +     L  ++     +VL 
Sbjct: 239310 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 239131

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F +++K  VNG++EHP + YLK+    
Sbjct: 239130 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 238972

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 238971 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 238840

Query: 186    LK 187
              L+
Sbjct: 238839 LQ 238834


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 1/163 (0%)
 Frame = -3

Query: 7       SFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLG 65
               S +  SA+  +G+ V    + G A LI NVAS     + +   LNE+Q  +  RR  VL 
Sbjct: 1227178 SVFTYSAVQ-NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLA 1227002

Query: 66      FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPKFAYLKDKLPY 125
               FPC QF +QE   N EI    ++    G   P F    +  V G +  P F  L+ +   
Sbjct: 1227001 FPCAQFANQEPLNNTEI---AQWCEDLGLLFPVF---DRVNVKGSSADPLFQMLRAQQGA 1226840

Query: 126     PYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRR 168
               P                         WN+ K+L    G P R+
Sbjct: 1226839 PL------------------------WNYTKYLCDRSGVPRRK 1226783


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000067_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Pan troglodytes # Complete
         (226 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    91   5e-19
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    55   6e-08

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
 Frame = -3

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYVLFVNVASYXGLT-GQYIELNALQEELAPFGLV 95
              +IY++    ++G ++ P+   Q+ G  +L  NVAS  G T G Y    AL  +    G +
Sbjct: 239310 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 239140

Query: 96     ILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
              +L FPCNQF  QEPG   E+  +    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 239139 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 238975

Query: 156    CPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 215
              C     +LGT+            ++WNF  FLV  DG  + R+    TVS ++  +L  +
Sbjct: 238974 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 238837

Query: 216    R 216
              +
Sbjct: 238836 Q 238834



 Score = 91.3 bits (225), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
 Frame = -2

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYVLFVNVASYXGLT-GQYIELNALQEELAPFGLV 95
              +IY++    ++G ++ P+   Q+ G  +L  NVAS  G T G Y    AL  +    G +
Sbjct: 234658 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 234488

Query: 96     ILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
              +L FPCNQF  QEPG   E+  +    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 234487 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 234323

Query: 156    CPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 215
              C     +LGT+            ++WNF  FLV  DG  + R+    TVS ++  +L  +
Sbjct: 234322 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 234185

Query: 216    RRQAA 220
              +  A+
Sbjct: 234184 QAAAS 234170



 Score = 89.4 bits (220), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
 Frame = -1

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYVLFVNVASYXGLT-GQYIELNALQEELAPFGLV 95
              +IY++    ++G ++ P+   Q+ G  +L  NVAS  G T G Y    AL  +    G +
Sbjct: 236984 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 236814

Query: 96     ILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
              +L FPCNQF  QEPG   E+  +    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 236813 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 236649

Query: 156    CPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 215
              C     +LGT+            ++WNF  FLV  DG  + R+    TVS ++  +L  +
Sbjct: 236648 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 236511

Query: 216    R 216
              +
Sbjct: 236510 Q 236508


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
 Frame = -3

Query: 38      GTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQYIE-LNALQEELAPFGLVI 96
                +++ Y A  +   + +  ++Y+G   L VNVAS   L    IE LN +Q+        +
Sbjct: 1227181 ASVFTYSA--VQNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 97      LGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156
               L FPC QF  QEP  N+EI    ++    G   P   +F++ +V G      +  L+   
Sbjct: 1227007 LAFPCAQFANQEPLNNTEIA---QWCEDLGLLFP---VFDRVNVKGSSADPLFQMLRAQQ 1226846

Query: 157     PPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIP 194
                               P+      WN+ K+L    G+P
Sbjct: 1226845 GA--------------PL------WNYTKYLCDRSGVP 1226792


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000068_1.0 # Protein # Glutathione peroxidase 4 (GPx4) #
Pan troglodytes # Complete
         (197 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   125   2e-29
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    84   5e-17
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    30   0.99 
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   4.0  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    28   6.2  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    27   6.8  
LmjF16_01_20050601_V5.2 [~/leish/curated/chr16/LmjF16_01_2005060...    27   8.2  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  125 bits (313), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
 Frame = -3

Query: 40     SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILA 99
              S+++F     D    +L +++G   ++ NVAS+ G T+  Y     L+ +Y   G  +LA
Sbjct: 239310 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 239131

Query: 100    FPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158
              FPCNQF  QEPG+ EE+K FA   +  +F +  K+CVNG+  HPL+ ++K     KGILG
Sbjct: 239130 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLK--NTCKGILG 238957

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 238956 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 238849



 Score =  123 bits (309), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
 Frame = -1

Query: 40     SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILA 99
              S+++F     D    +L +++G   ++ NVAS+ G T+  Y     L+ +Y   G  +LA
Sbjct: 236984 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 236805

Query: 100    FPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158
              FPCNQF  QEPG+ EE+K FA   +  +F +  K+CVNG+  HPL+ ++K     KGILG
Sbjct: 236804 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLK--NTCKGILG 236631

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 236630 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 236523



 Score =  123 bits (309), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
 Frame = -2

Query: 40     SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILA 99
              S+++F     D    +L +++G   ++ NVAS+ G T+  Y     L+ +Y   G  +LA
Sbjct: 234658 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 234479

Query: 100    FPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158
              FPCNQF  QEPG+ EE+K FA   +  +F +  K+CVNG+  HPL+ ++K     KGILG
Sbjct: 234478 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLK--NTCKGILG 234305

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 234304 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 234197


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 68/133 (51%)
 Frame = -3

Query: 50      DGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQE 109
               +G  V L KY G+  ++ NVAS+      N   L ++   Y      +LAFPC QF  QE
Sbjct: 1227151 NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFPCAQFANQE 1226972

Query: 110     PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFL 169
               P +N EI ++     + F +F ++ V G  A PL++ ++ Q         A  WN+TK+L
Sbjct: 1226971 PLNNTEIAQWCEDLGLLFPVFDRVNVKGSSADPLFQMLRAQQ-------GAPLWNYTKYL 1226813

Query: 170     IDKNGCVVKRYGP 182
                D++G   ++  P
Sbjct: 1226812 CDRSGVPRRKLEP 1226774



 Score = 27.3 bits (59), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 8       RLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
               R  + A +C  LAA GL  + C  R  +RC +S
Sbjct: 2554620 RRSQTARMCAGLAAWGLPVSSCCVRSAFRCRKS 2554522


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 30.4 bits (67), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
 Frame = +1

Query: 5      RLCRLLKPALLCGALA------APGLAGTMCASRDDWRC 37
              R CR    + LC + A      AP  AGT   SR  WRC
Sbjct: 377557 RFCRSTACSTLCPSSARRWVKSAPSPAGTASTSRTSWRC 377673


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.1 bits (61), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -1

Query: 4      GRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAK 47
              GR  RL  PAL  GA  A       C  R +WRCA +    SA+
Sbjct: 384304 GRGWRLSGPALAMGAAHA-----CRCHKRQEWRCATAQGVPSAE 384188


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 27.7 bits (60), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 3      LGRLCRLLKPALLCGALAAP-GLAGTMCASRDDWRCA 38
              +GR+CR   PA  CGAL    G+ G        WRCA
Sbjct: 412006 VGRVCRHPMPACTCGALRHL*GVLGLEALFDVRWRCA 412116


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 27.3 bits (59), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 12      PALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNL 56
               P  + G  A   +A   C  R  WRC R+      KD+ G++ NL
Sbjct: 1372677 PHYILGCFA---VAAAAC-DRRTWRCLRNASR*MGKDVTGYVANL 1372799


>LmjF16_01_20050601_V5.2
              [~/leish/curated/chr16/LmjF16_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 714659

 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 4      GRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
              GR C    PA  C A   PG AGT   +    R  RS
Sbjct: 591902 GRSCTRTAPAASCAARTHPGTAGTPRGAAPRGRSPRS 592012



 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 4      GRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
              GR C    PA  C A   PG AGT   +    R  RS
Sbjct: 595271 GRSCTRTAPAASCAARTHPGTAGTPRGAAPRGRSPRS 595381



 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 4      GRLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
              GR C    PA  C A   PG AGT   +    R  RS
Sbjct: 598643 GRSCTRTAPAASCAARTHPGTAGTPRGAAPRGRSPRS 598753


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000069_1.0 # Protein # Glutathione peroxidase 5 (GPx5) #
Pan troglodytes # Complete
         (220 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    83   1e-16
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    52   3e-07
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    29   2.3  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    29   3.4  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 96/205 (46%), Gaps = 2/205 (0%)
 Frame = -3

Query: 13     LLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATY 72
              +LLA  +  SP Q  M          +IYD++    +   Y    Q+ G  +L  NVA+ 
Sbjct: 239355 ILLAFLLSLSP-QSTM----------SIYDFKVNGSDHQPY-DLGQHKGHPLLIYNVASK 239212

Query: 73     XGLTAQYPELNAP--EELKPYGLVVLGFPCNQFGKQEPGDNKEILPALKYVRPGGGFVPS 130
               G T    E       + K  G +VL FPCNQF  QEPG  +E+  +    R    F   
Sbjct: 239211 CGFTKGGYETATALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAE 239047

Query: 131    FQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPD 190
              F + EK  VNGE E  ++ +LK++C     ILGT             ++WNF  FLV  D
Sbjct: 239046 FPIMEKVCVNGEHEHPLYHYLKNTC---KGILGTTL-----------VKWNFTAFLVDKD 238909

Query: 191    GIPVMRWSHRATVSSVKTDILAYLK 215
              G  V R++  ATVS ++  +L  L+
Sbjct: 238908 GHAVCRFAPGATVSEIEKKLLPLLQ 238834



 Score = 81.6 bits (200), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
 Frame = -1

Query: 39     TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYXGLTAQYPELNAP--EELKPYGLVVL 96
              +IYD++    +   Y    Q+ G  +L  NVA+  G T    E       + K  G +VL
Sbjct: 236984 SIYDFKVNGSDHQPY-DLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 97     GFPCNQFGKQEPGDNKEILPALKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCP 156
               FPCNQF  QEPG  +E+  +    R    F   F + EK  VNGE E  ++ +LK++C 
Sbjct: 236807 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC- 236646

Query: 157    HPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 215
                  ILGT             ++WNF  FLV  DG  V R++  ATVS ++  +L  L+
Sbjct: 236645 --KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 236508



 Score = 81.6 bits (200), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
 Frame = -2

Query: 39     TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYXGLTAQYPELNAP--EELKPYGLVVL 96
              +IYD++    +   Y    Q+ G  +L  NVA+  G T    E       + K  G +VL
Sbjct: 234658 SIYDFKVNGSDHQPY-DLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 97     GFPCNQFGKQEPGDNKEILPALKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCP 156
               FPCNQF  QEPG  +E+  +    R    F   F + EK  VNGE E  ++ +LK++C 
Sbjct: 234481 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC- 234320

Query: 157    HPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 215
                  ILGT             ++WNF  FLV  DG  V R++  ATVS ++  +L  L+
Sbjct: 234319 --KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQ 234182


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 3/176 (1%)
 Frame = -3

Query: 38      GTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYXGLTAQYPELNAPEELKPYG---LV 94
                +++ Y A+   K   V  ++Y G   L VNVA+   L +   E+   E  + YG     
Sbjct: 1227181 ASVFTYSAVQNGKT--VVLQKYSGYATLIVNVASRCSLASTNIEM-LNEVQQAYGSRRFT 1227011

Query: 95      VLGFPCNQFGKQEPGDNKEILPALKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHS 154
               VL FPC QF  QEP +N EI    ++    G   P   +F++ +V G     +F  L+  
Sbjct: 1227010 VLAFPCAQFANQEPLNNTEI---AQWCEDLGLLFP---VFDRVNVKGSSADPLFQMLRAQ 1226849

Query: 155     CPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 210
                  P                     WN+ K+L    G+P  +     ++ +++  I
Sbjct: 1226848 QGAP--------------------LWNYTKYLCDRSGVPRRKLEPGCSMDALRQSI 1226741


>LmjF29_01_20050601_V5.2
            [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
            This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 29.3 bits (64), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 10   LLPLLLACFVQTSPKQEKMKMDC 32
            LL  L AC  Q  P QE+ KM+C
Sbjct: 7464 LLERLCACLCQGGPAQERGKMEC 7532


>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 28.9 bits (63), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 80      PELNAPEELKPYGLVVLGFPCNQFGKQEPGDNKEILPALKYVRP 123
               P+++ P  ++  G  V G PC Q G+Q      E LP  ++  P
Sbjct: 1581500 PQVSLPGGIQGEGAPVPGLPCRQEGRQGAAPAAEELPLGRHCTP 1581631


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000070_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Pan troglodytes # Complete
         (221 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    88   4e-18
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    55   3e-08
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    31   0.88 

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 3/183 (1%)
 Frame = -3

Query: 37     TGTIYEYGALTLNGEEYIQFK--QFAGKHVLFVNVATYXGLA-AQYPELNALQEELKNFG 93
              T +IY++    +NG ++  +   Q  G  +L  NVA+  G     Y    AL  + K+ G
Sbjct: 239316 TMSIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLG 239146

Query: 94     VIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLK 153
               +VLAFPCNQF  QEPGT  E+     + C  + F   F + EK  VNGE E  ++ +LK
Sbjct: 239145 FMVLAFPCNQFAGQEPGTEEEV---KSFAC--TRFKAEFPIMEKVCVNGEHEHPLYHYLK 238981

Query: 154    NSCPPTSDLLGSSSQLFWEPMKVHDICWNFEKFLVGPDGVPVMRWFHQAPVSTVKSDILE 213
              N+C     +LG++            + WNF  FLV  DG  V R+   A VS ++  +L 
Sbjct: 238980 NTC---KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLP 238843

Query: 214    YLK 216
               L+
Sbjct: 238842 LLQ 238834



 Score = 86.3 bits (212), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
 Frame = -1

Query: 39     TIYEYGALTLNGEEYIQFK--QFAGKHVLFVNVATYXGLA-AQYPELNALQEELKNFGVI 95
              +IY++    +NG ++  +   Q  G  +L  NVA+  G     Y    AL  + K+ G +
Sbjct: 236984 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 236814

Query: 96     VLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNS 155
              VLAFPCNQF  QEPGT  E+     + C  + F   F + EK  VNGE E  ++ +LKN+
Sbjct: 236813 VLAFPCNQFAGQEPGTEEEV---KSFAC--TRFKAEFPIMEKVCVNGEHEHPLYHYLKNT 236649

Query: 156    CPPTSDLLGSSSQLFWEPMKVHDICWNFEKFLVGPDGVPVMRWFHQAPVSTVKSDILEYL 215
              C     +LG++            + WNF  FLV  DG  V R+   A VS ++  +L  L
Sbjct: 236648 C---KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 236511

Query: 216    K 216
              +
Sbjct: 236510 Q 236508



 Score = 86.3 bits (212), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 3/181 (1%)
 Frame = -2

Query: 39     TIYEYGALTLNGEEYIQFK--QFAGKHVLFVNVATYXGLA-AQYPELNALQEELKNFGVI 95
              +IY++    +NG ++  +   Q  G  +L  NVA+  G     Y    AL  + K+ G +
Sbjct: 234658 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 234488

Query: 96     VLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNS 155
              VLAFPCNQF  QEPGT  E+     + C  + F   F + EK  VNGE E  ++ +LKN+
Sbjct: 234487 VLAFPCNQFAGQEPGTEEEV---KSFAC--TRFKAEFPIMEKVCVNGEHEHPLYHYLKNT 234323

Query: 156    CPPTSDLLGSSSQLFWEPMKVHDICWNFEKFLVGPDGVPVMRWFHQAPVSTVKSDILEYL 215
              C     +LG++            + WNF  FLV  DG  V R+   A VS ++  +L  L
Sbjct: 234322 C---KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 234185

Query: 216    K 216
              +
Sbjct: 234184 Q 234182


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
 Frame = -3

Query: 38      GTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVATYXGLAAQYPE-LNALQEELKNFGVIV 96
                +++ Y A+  NG+  +  ++++G   L VNVA+   LA+   E LN +Q+   +    V
Sbjct: 1227181 ASVFTYSAVQ-NGKTVV-LQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 97      LAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156
               LAFPC QF  QEP  N+EI       C   G +  F +F++ +V G     +F  L+   
Sbjct: 1227007 LAFPCAQFANQEPLNNTEI----AQWCEDLGLL--FPVFDRVNVKGSSADPLFQMLR--- 1226855

Query: 157     PPTSDLLGSSSQLFWEPMKVHDICWNFEKFLVGPDGVP 194
                        + Q    P+      WN+ K+L    GVP
Sbjct: 1226854 ---------AQQ--GAPL------WNYTKYLCDRSGVP 1226792


>LmjF32_01_20050601_V5.3
             [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 30.8 bits (68), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -2

Query: 123   CPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDICWN 182
             CP    +   +   KG    E+E  V T  K + PP S +  S+ QLF   + V+ + W+
Sbjct: 83508 CPPQRLLVRVEDPTKGIHQAEEESGVDTPRKKTTPPPS-VTSSNIQLFVPDIGVNTLAWS 83332

Query: 183   FEK 185
             +E+
Sbjct: 83331 YER 83323


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000071_1.0 # Protein # Glutathione peroxidase 7 (GPx7) #
Pan troglodytes # Complete
         (134 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    85   2e-17
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    78   2e-15

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/128 (36%), Positives = 64/128 (50%)
 Frame = -3

Query: 5      TVAAAWLLLWAAACAQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQHY 64
              T+  A+LL   +   Q     YDFK      +   L +++G   L+ NVAS+ GFT   Y
Sbjct: 239358 TILLAFLL---SLSPQSTMSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGY 239188

Query: 65     RALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTG 124
                   L        F VLAFPCNQF  QEP + +E++SFA   +   FP+  K+ V G  
Sbjct: 239187 ETATALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEH 239008

Query: 125    AHPAFKYL 132
               HP + YL
Sbjct: 239007 EHPLYHYL 238984



 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 56/107 (52%)
 Frame = -1

Query: 26     YDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
              YDFK      +   L +++G   L+ NVAS+ GFT   Y     L        F VLAFP
Sbjct: 236978 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 236799

Query: 86     CNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL 132
              CNQF  QEP + +E++SFA   +   FP+  K+ V G   HP + YL
Sbjct: 236798 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYL 236658



 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 56/107 (52%)
 Frame = -2

Query: 26     YDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
              YDFK      +   L +++G   L+ NVAS+ GFT   Y     L        F VLAFP
Sbjct: 234652 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 234473

Query: 86     CNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL 132
              CNQF  QEP + +E++SFA   +   FP+  K+ V G   HP + YL
Sbjct: 234472 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYL 234332


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/107 (39%), Positives = 59/107 (55%)
 Frame = -3

Query: 26      YDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
               + + AV   GK V L+KY G  +L+VNVAS       +   L ++Q+  G   F VLAFP
Sbjct: 1227172 FTYSAVQ-NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFP 1226996

Query: 86      CNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL 132
               C QF  QEP +N EI  +      + FP+F ++ V G+ A P F+ L
Sbjct: 1226995 CAQFANQEPLNNTEIAQWC-EDLGLLFPVFDRVNVKGSSADPLFQML 1226858


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000072_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Pan troglodytes # Complete
         (391 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   248   5e-66
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   9.4  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  248 bits (634), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 159/376 (42%), Positives = 210/376 (55%), Gaps = 15/376 (3%)
 Frame = -3

Query: 7       FNPESYELDKSFRLT-FTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGI 65
               F+P S  L   F+LT +T LKG  CK+PQ  L  LL+ L     Q+D            +
Sbjct: 2095666 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSATPGQKD------------V 2095523

Query: 66      GMDTCVIPLRHG-----GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDN 120
               GMD  ++PL H       L LV TTD+ +P V DP++ G+I  ANVLSDLY+MG+ +CD 
Sbjct: 2095522 GMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDT 2095343

Query: 121     MLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQ 180
               MLMLL  S +M + ER      I++GF + A  A T+VTGGQTV+NPW ++GGVA  V  
Sbjct: 2095342 MLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTVMNPWPLIGGVAMAVVS 2095163

Query: 181     PNEFIMPDNAV-PGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLV--VTQEDVELAYQ 237
                 E + P   +  GD+LVLTKPLG QVAV + QWL  P    +  +   ++ E++E  Y 
Sbjct: 2095162 EAEMVRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYN 2094983

Query: 238     EAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQR-----NEVSFVIHNL 292
                A  +M RLNR  A LM    AH ATD+TGFGILGHA N    Q        +  V+  L
Sbjct: 2094982 MATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDAPRSLCLVLERL 2094803

Query: 293     PVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQ-AARFCAEIKSPKYGEGHQAW 351
               P+     A SK   + + L+ G   ETSGGLL+  P    AA FCAE+ +     G  +W
Sbjct: 2094802 PMFKTAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTAAAAFCAELTA--VDGGCPSW 2094629

Query: 352     IIGIVEKGNRTARIID 367
               I+G VE  +R    +D
Sbjct: 2094628 IVGHVE--DRATNAVD 2094587


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.5 bits (62), Expect = 9.4,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 49/134 (36%)
 Frame = -2

Query: 258    NAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCP 317
              +AH  T +T   I  H  N A++Q  E +     LP   K    S     +  L      
Sbjct: 389658 HAHTHTHMTRTCICLHICN-AQEQEKEATQQQQPLPPPRKKKGRSACIEALLTLRMTMRV 389482

Query: 318    ETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ 377
              +  GG    L R  +            G GH AW++ ++      A+ + + R I VA  
Sbjct: 389481 DPGGGNRCSLTRLLSVSVSGPPHRFACGGGHTAWVVRLMLSLTPAAKRMGRERFINVAAD 389302

Query: 378    VATQNVNPTPGATS 391
               A    N  P A +
Sbjct: 389301 TANSAQNR*PAAAA 389260


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000073_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Pan troglodytes # Complete
         (448 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   243   2e-64
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    29   8.6  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    29   9.0  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  243 bits (621), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 167/396 (42%), Positives = 215/396 (54%), Gaps = 15/396 (3%)
 Frame = -3

Query: 38      FEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97
               F+P +LGL   ++LT ++ +KG  CK+PQ  LL LL  L+                    
Sbjct: 2095666 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELS-------------------- 2095547

Query: 98      QEAGLPAGADPSPTFPALGIGMDSCVIPLRHG-----GLSLVQTTDFFYPLVEDPYMMGR 152
                    P   D         +GMD  ++PL H       L LV TTDFF+P V DP++ G+
Sbjct: 2095546 ---ATPGQKD---------VGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 2095403

Query: 153     IACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTPLMVKGFRDAAEEGGTAVTG 212
               I  ANVLSDLY+MGI +CD MLMLL+ S  M E ER   T  ++KGF + A    T VTG
Sbjct: 2095402 IGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTG 2095223

Query: 213     GQTVVNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPER 271
               GQTV+NPW +IGGVA  V    E + P   +  GD+LVLTKPLG QVAVN  QWL  P  
Sbjct: 2095222 GQTVMNPWPLIGGVAMAVVSEAEMVRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSP 2095043

Query: 272     WNKVKMV--VSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 329
                 +  +   +S EE+E  Y  A  +M  LNR  A LM    AH ATD+TGFGILGH+ N 
Sbjct: 2095042 LYEEAIAGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNF 2094863

Query: 330     AKQQR-----NEVSFVIHNLPIIAKMAAVSKA-SGRFGLLQGTSAETSGGLLICLPREQ- 382
                  Q        +  V+  LP+     A SK  + ++ LL+G SAETSGGLL+  P    
Sbjct: 2094862 GAAQAVGDAPRSLCLVLERLPMFKTAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTA 2094683

Query: 383     AARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 418
               AA FC+E+  +    G  +WIVG VE  +R    +D
Sbjct: 2094682 AAAFCAEL--TAVDGGCPSWIVGHVE--DRATNAVD 2094587


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 28.9 bits (63), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 244    VGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVK 276
              VGD  +LT P    V    HQ +D P R + ++
Sbjct: 297833 VGDTCILTSPAALPVGATVHQMVDWPRRMDHMQ 297931


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 28.9 bits (63), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +3

Query: 63      KVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEASQEAGLPAGAD 107
               KVPQ+ L +  A   R DVR PL RG VGG+       G   G D
Sbjct: 1382718 KVPQQRLRRWQA--WRRDVRRPLLRGRVGGRAFGRPAVG*NDGGD 1382846


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000074_1.0 # Protein # Selenoprotein P (SelP) # Pan
troglodytes # Complete
         (380 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    32   1.2  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    31   1.7  
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    30   3.4  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    30   4.5  
LmjF01_01_20050601_V5.2 [~/leish/curated/chr1/LmjF01_01_20050601...    29   6.1  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    29   6.1  

>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 31.6 bits (70), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 198    ETPSPH-YHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPP 240
              +TP  H Y H H         G S+  E +QP  P AP +  PP
Sbjct: 681899 DTPHTHKYTHTHASARRIDIFGPSQYGEGEQPHPPPAPVNAQPP 681768


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 30.8 bits (68), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 240    PGLHHHHKHKGQHRQGHPENQDMPGSEDLQDLQKKLCRKRCI 281
              P  HHH +HK + ++    N+ +  S +LQ  ++ +CR  C+
Sbjct: 896391 PNRHHHSRHKRKTQEQAQGNKKIRHSRNLQHPRRHVCRCSCV 896266



 Score = 28.5 bits (62), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
 Frame = +2

Query: 228     PGAPNAPTHPAPPG-------------LHHHHKHKGQHRQGHP 257
               PG+P    HPAP G             LHH H H+    +G P
Sbjct: 1564481 PGSPATRPHPAPKGARREREDGGCVVLLHHQHGHRRNKLRGSP 1564609


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 30.0 bits (66), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +1

Query: 242    LHHHHKHKGQHRQGHPENQDMPGSEDLQDLQKKLCRKRCINQLLCKLPKDSELAPRSCCC 301
              L  H +H  + R+   E    PGS   Q LQ++  ++ C+   +C+  + S+  PRS   
Sbjct: 137686 LRLHERHVARERERETEK---PGSGTRQGLQRRPLKRCCVRVGVCRSLRVSDHGPRSRDW 137856

Query: 302    HCRHL 306
               CR L
Sbjct: 137857 GCRVL 137871


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 29.6 bits (65), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 229     GAPNAPTHPAPPGLHHHHKHK 249
               GAP+AP HP     HH H+H+
Sbjct: 1249881 GAPSAPQHPRAQIQHHRHRHR 1249943


>LmjF01_01_20050601_V5.2
              [~/leish/curated/chr1/LmjF01_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 268984

 Score = 28.9 bits (63), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 226    QQPGAPNAPTHPAPPGLHHHHKHKGQHRQGHPENQDMPG 264
              ++ GAP    H        H   KG+HRQ H   + + G
Sbjct: 153393 RRAGAPREAHHRCGGAAQQHQPEKGEHRQAHSRRRRLNG 153509


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 28.9 bits (63), Expect = 6.1,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
 Frame = -3

Query: 215    QHLGSSELSENQQPGAPNAPTHPAPPG--LHHHHKHKGQ---------HRQGHPENQDMP 263
              +H  + E  EN   G     TH    G  +H H   KG+         H  G PE  ++ 
Sbjct: 841837 KHHDNKEAGENNHAGEDTRETHTREEGARVHMHRGEKGEREREMGDALHHPGRPERMNVR 841658

Query: 264    GSEDLQDLQKKLCRKR 279
              G ED  +  ++   KR
Sbjct: 841657 GREDGMEGHRRRTPKR 841610



 Score = 28.5 bits (62), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 221     ELSENQQPGAPNAPTHPAPPGLHHHHKHKG 250
               E   NQ+ GA   P H A  G  HHHK  G
Sbjct: 2139830 ERRTNQRRGACAVPRHRAEQGSGHHHKQSG 2139741


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000098_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Mus musculus # Complete
         (201 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    89   2e-18
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    66   1e-11
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    27   7.9  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 88/190 (46%)
 Frame = -1

Query: 12     STVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLXGTTIRDYTEMNDLQKRLGPRGLVV 71
              S++Y F     +  +P  LG  +G  LLI NVAS  G T   Y     L  +    G +V
Sbjct: 236987 SSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMV 236811

Query: 72     LGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNAL 131
              L FPCNQF  QE G  EE+  S    R    F+  F + EK  VNGE  HPL+ +L+N  
Sbjct: 236810 LAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC 236646

Query: 132    PTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIE 191
                            K I+ + +    + WNF  FLV  DG  V R++      +IE  + 
Sbjct: 236645 --------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLL 236520

Query: 192    TLLSQQSGNS 201
               LL   SG++
Sbjct: 236519 PLLQADSGDA 236490



 Score = 89.0 bits (219), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 94/203 (46%), Gaps = 2/203 (0%)
 Frame = -3

Query: 1      MCAARLSAAAQST--VYAFSARPLTGGEPVSLGSLRGKVLLIENVASLXGTTIRDYTEMN 58
              + A  LS + QST  +Y F     +  +P  LG  +G  LLI NVAS  G T   Y    
Sbjct: 239352 LLAFLLSLSPQSTMSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETAT 239176

Query: 59     DLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGE 118
               L  +    G +VL FPCNQF  QE G  EE+  S    R    F+  F + EK  VNGE
Sbjct: 239175 ALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGE 239011

Query: 119    KAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYS 178
                HPL+ +L+N                K I+ + +    + WNF  FLV  DG  V R++
Sbjct: 239010 HEHPLYHYLKNTC--------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFA 238885

Query: 179    RRFRTIDIEPDIETLLSQQSGNS 201
                    +IE  +  LL   SG++
Sbjct: 238884 PGATVSEIEKKLLPLLQADSGDA 238816



 Score = 85.1 bits (209), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 84/183 (45%)
 Frame = -2

Query: 12     STVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLXGTTIRDYTEMNDLQKRLGPRGLVV 71
              S++Y F     +  +P  LG  +G  LLI NVAS  G T   Y     L  +    G +V
Sbjct: 234661 SSIYDFKVNG-SDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMV 234485

Query: 72     LGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNAL 131
              L FPCNQF  QE G  EE+  S    R    F+  F + EK  VNGE  HPL+ +L+N  
Sbjct: 234484 LAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC 234320

Query: 132    PTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIEPDIE 191
                            K I+ + +    + WNF  FLV  DG  V R++      +IE  + 
Sbjct: 234319 --------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLL 234194

Query: 192    TLL 194
               LL
Sbjct: 234193 PLL 234185



 Score = 27.3 bits (59), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 126    FLRNALPTPSDDPTALMTDPKYIIWSPVCR 155
              FLR A P+     T       YIIW+PVCR
Sbjct: 104033 FLR*ASPSMQQMNTHRHPRTAYIIWTPVCR 104122


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 70/169 (41%)
 Frame = -3

Query: 8       AAAQSTVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLXGTTIRDYTEMNDLQKRLGPR 67
               A   ++V+ +SA  +  G+ V L    G   LI NVAS       +   +N++Q+  G R
Sbjct: 1227193 AVGMASVFTYSA--VQNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSR 1227020

Query: 68      GLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFL 127
                  VL FPC QF +QE   N EI    ++    G     F +F++  V G  A PLF  L
Sbjct: 1227019 RFTVLAFPCAQFANQEPLNNTEI---AQWCEDLGLL---FPVFDRVNVKGSSADPLFQML 1226858

Query: 128     RNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRR 176
               R     P                         WN+ K+L    GVP R+
Sbjct: 1226857 RAQQGAP------------------------LWNYTKYLCDRSGVPRRK 1226783


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 27.3 bits (59), Expect = 7.9,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +3

Query: 14     VYAFSARPLTGGEP-VSLGSLRGKVLLIENVASLXGTTIRDYTEMNDLQ-KRLGPRGLVV 71
              VY FS+ P  GG P VS   LR  V+   +VAS     + ++ ++ + +  R   R    
Sbjct: 514857 VYVFSS-PFLGGRPGVSSAMLRVLVMRCRDVASARAPRMSEHRQLKNCEPSRPTQR*RAR 515033

Query: 72     LGFPCNQFG 80
               G PC  +G
Sbjct: 515034 AGAPCRLYG 515060


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000099_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Mus musculus # Complete
         (190 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    77   6e-15
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    59   3e-09
LmjF16_01_20050601_V5.2 [~/leish/curated/chr16/LmjF16_01_2005060...    28   5.0  
LmjF08_01_20050601_V5.2 [~/leish/curated/chr8/LmjF08_01_20050601...    28   5.2  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 1/184 (0%)
 Frame = -2

Query: 7      SFYDLSAVGLDGEKIDFNTFRGRAVLIENVASLXGTTTRDYNQLNELQCRFPRR-LVVLG 65
              S YD    G D +  D    +G  +LI NVAS  G T   Y     L  ++     +VL 
Sbjct: 234658 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 234479

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F + +K  VNG++EHP++ YLK+    
Sbjct: 234478 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 234320

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 234319 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 234188

Query: 186    LKVA 189
              L+ A
Sbjct: 234187 LQAA 234176



 Score = 75.5 bits (184), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 1/182 (0%)
 Frame = -1

Query: 7      SFYDLSAVGLDGEKIDFNTFRGRAVLIENVASLXGTTTRDYNQLNELQCRFPRR-LVVLG 65
              S YD    G D +  D    +G  +LI NVAS  G T   Y     L  ++     +VL 
Sbjct: 236984 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 236805

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F + +K  VNG++EHP++ YLK+    
Sbjct: 236804 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 236646

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 236645 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 236514

Query: 186    LK 187
              L+
Sbjct: 236513 LQ 236508



 Score = 75.1 bits (183), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 1/182 (0%)
 Frame = -3

Query: 7      SFYDLSAVGLDGEKIDFNTFRGRAVLIENVASLXGTTTRDYNQLNELQCRFPRR-LVVLG 65
              S YD    G D +  D    +G  +LI NVAS  G T   Y     L  ++     +VL 
Sbjct: 239310 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 239131

Query: 66     FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPY 125
              FPCNQF  QE    EE+  S    R    ++  F + +K  VNG++EHP++ YLK+    
Sbjct: 239130 FPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC-- 238972

Query: 126    PYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKRL 185
                          K I+ + +    V WNF  FL+  +G    R++       IE  +  L
Sbjct: 238971 ------------KGILGTTL----VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPL 238840

Query: 186    LK 187
              L+
Sbjct: 238839 LQ 238834


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 1/163 (0%)
 Frame = -3

Query: 7       SFYDLSAVGLDGEKIDFNTFRGRAVLIENVASLXGTTTRDYNQLNELQCRF-PRRLVVLG 65
               S +  SAV  +G+ +    + G A LI NVAS     + +   LNE+Q  +  RR  VL 
Sbjct: 1227178 SVFTYSAVQ-NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLA 1227002

Query: 66      FPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPY 125
               FPC QF +QE   N EI    ++    G   P F    + +V G +  P+F  L+ +   
Sbjct: 1227001 FPCAQFANQEPLNNTEI---AQWCEDLGLLFPVFD---RVNVKGSSADPLFQMLRAQQGA 1226840

Query: 126     PYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRR 168
               P                         WN+ K+L    G P R+
Sbjct: 1226839 PL------------------------WNYTKYLCDRSGVPRRK 1226783


>LmjF16_01_20050601_V5.2
              [~/leish/curated/chr16/LmjF16_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 714659

 Score = 27.7 bits (60), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 69     NQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFA 117
              N+   QE      + NS +   P  G+ PT SL      +  +EHP F+
Sbjct: 548881 NESASQEEWHYAGVANSDEAAFPAAGHGPTSSLLLHPGQDVASEHPAFS 548735


>LmjF08_01_20050601_V5.2
              [~/leish/curated/chr8/LmjF08_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 574972

 Score = 27.7 bits (60), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 93     GGYQPTFSLTQKCDVNGQNE 112
              GGY   +SLT+K ++NG+ E
Sbjct: 223685 GGYLSRYSLTRKANINGKQE 223744


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000100_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Mus musculus # Complete
         (223 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    79   3e-15
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    49   3e-06
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    27   9.2  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 6/189 (3%)
 Frame = -2

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYILFVNVAS----YGDQYLELNALQEELGPFGLV 92
              +IY++    ++G ++ P+   Q+ G  +L  NVAS        Y    AL  +    G +
Sbjct: 234658 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 234488

Query: 93     ILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 152
              +L FP NQF  QEPG   E+  S    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 234487 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 234323

Query: 153    CPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYM 212
              C     +LG+             ++WNF  FLV  DG  V R+    TVS ++  +L  +
Sbjct: 234322 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 234185

Query: 213    RRQAALSAR 221
                QAA S++
Sbjct: 234184 --QAAASSK 234164



 Score = 77.4 bits (189), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
 Frame = -3

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYILFVNVAS----YGDQYLELNALQEELGPFGLV 92
              +IY++    ++G ++ P+   Q+ G  +L  NVAS        Y    AL  +    G +
Sbjct: 239310 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 239140

Query: 93     ILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 152
              +L FP NQF  QEPG   E+  S    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 239139 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 238975

Query: 153    CPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYM 212
              C     +LG+             ++WNF  FLV  DG  V R+    TVS ++  +L  +
Sbjct: 238974 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 238837

Query: 213    R 213
              +
Sbjct: 238836 Q 238834



 Score = 76.3 bits (186), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 6/181 (3%)
 Frame = -1

Query: 39     TIYEYGALTIDGEEYIPFK--QYAGKYILFVNVAS----YGDQYLELNALQEELGPFGLV 92
              +IY++    ++G ++ P+   Q+ G  +L  NVAS        Y    AL  +    G +
Sbjct: 236984 SIYDF---KVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 236814

Query: 93     ILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 152
              +L FP NQF  QEPG   E+  S    R    F   F + EK  VNGE E   Y +LKN+
Sbjct: 236813 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 236649

Query: 153    CPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDILSYM 212
              C     +LG+             ++WNF  FLV  DG  V R+    TVS ++  +L  +
Sbjct: 236648 C---KGILGTT-----------LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 236511

Query: 213    R 213
              +
Sbjct: 236510 Q 236508


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 4/161 (2%)
 Frame = -3

Query: 35      GMSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVAS---YGDQYLE-LNALQEELGPFG 90
               GM+ +++ Y A  +   + +  ++Y+G   L VNVAS        +E LN +Q+  G   
Sbjct: 1227187 GMA-SVFTYSA--VQNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRR 1227017

Query: 91      LVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK 150
                 +L FP  QF  QEP  N+EI    ++    G   P   +F++ +V G      +  L+
Sbjct: 1227016 FTVLAFPCAQFANQEPLNNTEI---AQWCEDLGLLFP---VFDRVNVKGSSADPLFQMLR 1226855

Query: 151     NSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIP 191
                         G+P              WN+ K+L    G+P
Sbjct: 1226854 AQ-------QGAP-------------LWNYTKYLCDRSGVP 1226792


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 27.3 bits (59), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
 Frame = -3

Query: 21     PGRGQEKS----------KTDCHGGMSGTIYEYGALTIDGEEYIPFKQYAGKYILFVNVA 70
              PG+GQ++           KT      SG  Y     T++    + F    G + LFV +A
Sbjct: 152262 PGQGQQQLSSLSPPDSLSKTLVAALPSGNTYSVPHYTLESRGSVCFSVDGGLHYLFVGIA 152083

Query: 71     SYGDQY-----LELNALQEELG 87
               + +++     + LNA ++E G
Sbjct: 152082 HFTEEWAPTLRVTLNAEEDEKG 152017


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000101_1.0 # Protein # Glutathione peroxidase 4 (GPx4) #
Mus musculus # Complete
         (197 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   120   7e-28
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    85   4e-17
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    29   2.1  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    29   2.6  
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    29   2.6  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    27   7.7  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  120 bits (300), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
 Frame = -3

Query: 40     SMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQXGKTDVNYTQLVDLHARYAECGLRILA 99
              S+++F     D     L +++G   ++ NVAS+ G T   Y     L+ +Y   G  +LA
Sbjct: 239310 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 239131

Query: 100    FPCNQFGRQEPGSNQEIKEFAAG-YNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLG 158
              FPCNQF  QEPG+ +E+K FA   +  +F +  K+CVNG+  HPL+ ++K   K  G+LG
Sbjct: 239130 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCK--GILG 238957

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 238956 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 238849



 Score =  119 bits (298), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
 Frame = -1

Query: 40     SMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQXGKTDVNYTQLVDLHARYAECGLRILA 99
              S+++F     D     L +++G   ++ NVAS+ G T   Y     L+ +Y   G  +LA
Sbjct: 236984 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 236805

Query: 100    FPCNQFGRQEPGSNQEIKEFAAG-YNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLG 158
              FPCNQF  QEPG+ +E+K FA   +  +F +  K+CVNG+  HPL+ ++K   K  G+LG
Sbjct: 236804 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCK--GILG 236631

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 236630 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 236523



 Score =  119 bits (298), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
 Frame = -2

Query: 40     SMHEFSAKDIDGHMVCLDKYRGFVCIVTNVASQXGKTDVNYTQLVDLHARYAECGLRILA 99
              S+++F     D     L +++G   ++ NVAS+ G T   Y     L+ +Y   G  +LA
Sbjct: 234658 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 234479

Query: 100    FPCNQFGRQEPGSNQEIKEFAAG-YNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLG 158
              FPCNQF  QEPG+ +E+K FA   +  +F +  K+CVNG+  HPL+ ++K   K  G+LG
Sbjct: 234478 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCK--GILG 234305

Query: 159    NA-IKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193
                 +KWNFT FL+DK+G  V R+ P      IEK L
Sbjct: 234304 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 234197


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 84.7 bits (208), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 73/148 (49%)
 Frame = -3

Query: 50      DGHMVCLDKYRGFVCIVTNVASQXGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQE 109
               +G  V L KY G+  ++ NVAS+      N   L ++   Y      +LAFPC QF  QE
Sbjct: 1227151 NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFPCAQFANQE 1226972

Query: 110     PGSNQEIKEFAAGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFL 169
               P +N EI ++     + F ++ ++ V G  A PL++ ++ Q         A  WN+TK+L
Sbjct: 1226971 PLNNTEIAQWCEDLGLLFPVFDRVNVKGSSADPLFQMLRAQQ-------GAPLWNYTKYL 1226813

Query: 170     IDKNGCVVKRYGPMEEPQVIEKDLPCYL 197
                D++G   ++  P      + + + C L
Sbjct: 1226812 CDRSGVPRRKLEPGCSMDALRQSIECVL 1226729



 Score = 27.3 bits (59), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 7       SRLLKPALLCGALAAPGLAGTMCASRDDWRCARS 40
               +R  + A +C  LAA GL  + C  R  +RC +S
Sbjct: 2554623 ARRSQTARMCAGLAAWGLPVSSCCVRSAFRCRKS 2554522


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 29.3 bits (64), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%)
 Frame = +3

Query: 12      PALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVCLDKYRGFVCIVTNVAS 71
               P+LL  + A+P +  T  ASRD      ++HE          +CL  Y   +C V+    
Sbjct: 1205394 PSLLSTSSASPVVRSTTWASRD-----AALHE----------ICL--YLLAICFVS---- 1205510

Query: 72      QXGKTDVNYTQLVDLHARYAECGLRILAF 100
                  KT   Y +L  L    A+C L+  A+
Sbjct: 1205511 ---KTHARYAELSSLQLYAADCMLQCAAY 1205588


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 28.9 bits (63), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 2      SWGRLSRLLKPALLCGALAAPGLAGTMCAS--RDDWRCARSMHEFSAKDIDGHM-VCLDK 58
              SW R+++   PALL     AP +  T CA+     W+ A  + E  ++     +   +++
Sbjct: 217035 SWIRVTQKRSPALLASCWKAPRVCRTTCAAVRAGRWKNATRLREQQSRHTQLVLNRAMNQ 216856

Query: 59     YRGFVCIVTN 68
               RG  CI  +
Sbjct: 216855 RRGVACITAS 216826


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 28.9 bits (63), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 37     CARSMHEFSAKDIDGHMVCLDKY-----RGFVCIVTNVASQXGKT 76
              CARS+H    K +D   +C+ +Y     R FV   T+V+   G+T
Sbjct: 255325 CARSVHTCKRKRVDSIALCISRYTHVYKRVFVYSYTHVSFLFGRT 255191


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 27.3 bits (59), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -1

Query: 4      GRLSRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAK 47
              GR  RL  PAL  GA  A       C  R +WRCA +    SA+
Sbjct: 384304 GRGWRLSGPALAMGAAHA-----CRCHKRQEWRCATAQGVPSAE 384188


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000102_1.0 # Protein # Glutathione peroxidase 5 (GPx5) #
Mus musculus # Complete
         (237 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    82   4e-16
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    54   7e-08
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    28   5.9  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
 Frame = -3

Query: 55     TIYDYEALSLNGKEHIPFK--QYAGKHVLFVNVATYXGLTIQ-YPELNALQEDLKPFGLV 111
              +IYD++   +NG +H P+   Q+ G  +L  NVA+  G T   Y    AL    K  G +
Sbjct: 239310 SIYDFK---VNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 239140

Query: 112    ILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRS 171
              +L FPCNQF  QEPG   E+       R    F   F +  K  VNGE+E  ++ +LK +
Sbjct: 239139 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 238975

Query: 172    CPHPSETVVMSKHTFWEPIKVHDIRWNFEKFLVGPDGIPVMRWFHQAPVSTVKSDIMAYL 231
              C     T +              ++WNF  FLV  DG  V R+   A VS ++  ++  L
Sbjct: 238974 CKGILGTTL--------------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 238837



 Score = 81.6 bits (200), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
 Frame = -1

Query: 55     TIYDYEALSLNGKEHIPFK--QYAGKHVLFVNVATYXGLTIQ-YPELNALQEDLKPFGLV 111
              +IYD++   +NG +H P+   Q+ G  +L  NVA+  G T   Y    AL    K  G +
Sbjct: 236984 SIYDFK---VNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 236814

Query: 112    ILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRS 171
              +L FPCNQF  QEPG   E+       R    F   F +  K  VNGE+E  ++ +LK +
Sbjct: 236813 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 236649

Query: 172    CPHPSETVVMSKHTFWEPIKVHDIRWNFEKFLVGPDGIPVMRWFHQAPVSTVKSDIMAYL 231
              C     T +              ++WNF  FLV  DG  V R+   A VS ++  ++  L
Sbjct: 236648 CKGILGTTL--------------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 236511



 Score = 81.6 bits (200), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
 Frame = -2

Query: 55     TIYDYEALSLNGKEHIPFK--QYAGKHVLFVNVATYXGLTIQ-YPELNALQEDLKPFGLV 111
              +IYD++   +NG +H P+   Q+ G  +L  NVA+  G T   Y    AL    K  G +
Sbjct: 234658 SIYDFK---VNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFM 234488

Query: 112    ILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRS 171
              +L FPCNQF  QEPG   E+       R    F   F +  K  VNGE+E  ++ +LK +
Sbjct: 234487 VLAFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNT 234323

Query: 172    CPHPSETVVMSKHTFWEPIKVHDIRWNFEKFLVGPDGIPVMRWFHQAPVSTVKSDIMAYL 231
              C     T +              ++WNF  FLV  DG  V R+   A VS ++  ++  L
Sbjct: 234322 CKGILGTTL--------------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 234185


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
 Frame = -3

Query: 54      GTIYDYEALSLNGKEHIPFKQYAGKHVLFVNVATYXGLTIQYPE-LNALQEDLKPFGLVI 112
                +++ Y A+  NGK  +  ++Y+G   L VNVA+   L     E LN +Q+        +
Sbjct: 1227181 ASVFTYSAVQ-NGKT-VVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 113     LGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSC 172
               L FPC QF  QEP +N EI    + +    G L  F +F + +V G +   +F  L+   
Sbjct: 1227007 LAFPCAQFANQEPLNNTEIAQWCEDL----GLL--FPVFDRVNVKGSSADPLFQMLRAQQ 1226846

Query: 173     PHPSETVVMSKHTFWEPIKVHDIRWNFEKFLVGPDGIP 210
                 P                     WN+ K+L    G+P
Sbjct: 1226845 GAP--------------------LWNYTKYLCDRSGVP 1226792


>LmjF34_01_20050601_V5.2
             [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 28.1 bits (61), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 95    YPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNL 129
             YP     ++   P  LV+L   CN  G Q+ GDNL
Sbjct: 38906 YPR*TNYEDTSAPTFLVLLEARCNANGVQQSGDNL 38802


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000103_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Mus musculus # Complete
         (221 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    75   3e-14
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    64   1e-10

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 3/222 (1%)
 Frame = -3

Query: 1      MAQKLWGSCLFSLFMAALAQ--ETLNPQKSKVDCNKGVTGTVYEYGANTIDGGEFVNFQQ 58
              +  + W S L SLF   L     +L+PQ          T ++Y++  N  D   + +  Q
Sbjct: 239400 LPTRSWNS-LLSLFNTILLAFLLSLSPQS---------TMSIYDFKVNGSDHQPY-DLGQ 239254

Query: 59     YAGKHILFVNVASFXGLT-ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILL 117
              + G  +L  NVAS  G T   Y     L  + K     VL FPCNQF  QEPG   E+  
Sbjct: 239253 HKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEV-K 239077

Query: 118    GLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKVH 177
                   R    +   F + EK  VNG++E  ++ +LKN+C     + G+            
Sbjct: 239076 SFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC---KGILGTTL---------- 238948

Query: 178    DIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYLNQTS 219
               ++WNF  FLV  DG  V R+     V  ++  ++  L   S
Sbjct: 238947 -VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQADS 238825



 Score = 72.4 bits (176), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 1/182 (0%)
 Frame = -1

Query: 39     TVYEYGANTIDGGEFVNFQQYAGKHILFVNVASFXGLT-ATYPELNTLQEELKPFNVTVL 97
              ++Y++  N  D   + +  Q+ G  +L  NVAS  G T   Y     L  + K     VL
Sbjct: 236984 SIYDFKVNGSDHQPY-DLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 98     GFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCP 157
               FPCNQF  QEPG   E+       R    +   F + EK  VNG++E  ++ +LKN+C 
Sbjct: 236807 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC- 236646

Query: 158    PTSELFGSPEHLFWDPMKVHDIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYLNQ 217
                  + G+             ++WNF  FLV  DG  V R+     V  ++  ++  L  
Sbjct: 236645 --KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQA 236505

Query: 218    TS 219
               S
Sbjct: 236504 DS 236499



 Score = 72.4 bits (176), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 1/183 (0%)
 Frame = -2

Query: 39     TVYEYGANTIDGGEFVNFQQYAGKHILFVNVASFXGLT-ATYPELNTLQEELKPFNVTVL 97
              ++Y++  N  D   + +  Q+ G  +L  NVAS  G T   Y     L  + K     VL
Sbjct: 234658 SIYDFKVNGSDHQPY-DLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 98     GFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCP 157
               FPCNQF  QEPG   E+       R    +   F + EK  VNG++E  ++ +LKN+C 
Sbjct: 234481 AFPCNQFAGQEPGTEEEV-KSFACTR----FKAEFPIMEKVCVNGEHEHPLYHYLKNTC- 234320

Query: 158    PTSELFGSPEHLFWDPMKVHDIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYLNQ 217
                  + G+             ++WNF  FLV  DG  V R+     V  ++  ++  L  
Sbjct: 234319 --KGILGTTL-----------VKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLLQA 234179

Query: 218    TST 220
               ++
Sbjct: 234178 AAS 234170


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
 Frame = -3

Query: 38      GTVYEYGANTIDGGEFVNFQQYAGKHILFVNVASFXGLTATYPE-LNTLQEELKPFNVTV 96
                +V+ Y A  +  G+ V  Q+Y+G   L VNVAS   L +T  E LN +Q+       TV
Sbjct: 1227181 ASVFTYSA--VQNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 97      LGFPCNQFGKQEPGKNSEIL-----LGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSF 151
               L FPC QF  QEP  N+EI      LGL            F +F++ +V G +   +F  
Sbjct: 1227007 LAFPCAQFANQEPLNNTEIAQWCEDLGLL-----------FPVFDRVNVKGSSADPLFQM 1226861

Query: 152     LKNSCPPTSELFGSPEHLFWDPMKVHDIRWNFEKFLVGPDGVP 194
               L+          G+P              WN+ K+L    GVP
Sbjct: 1226860 LRAQQ-------GAP-------------LWNYTKYLCDRSGVP 1226792


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000104_1.0 # Protein # Glutathione peroxidase 7 (GPx7) #
Mus musculus # Complete
         (186 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   105   2e-23
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    96   1e-20

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  105 bits (262), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
 Frame = -3

Query: 19     QSEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQNYRALQQLQRDLGPHHF 78
              QS    YDFK      +   L +++G   L+ NVAS+ GFT   Y     L        F
Sbjct: 239322 QSTMSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGF 239143

Query: 79     NVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQT-SGK 137
               VLAFPCNQF  QEP T  E+++FA   +   FP+  K+ V G   HP + YL  T  G 
Sbjct: 239142 MVLAFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGI 238963

Query: 138    EPT----WNFWKYLVDPDGKVVGAWDPTVPVAEIKPRI 171
                T    WNF  +LVD DG  V  + P   V+EI+ ++
Sbjct: 238962 LGTTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 238849



 Score =  103 bits (256), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
 Frame = -1

Query: 25     YDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQNYRALQQLQRDLGPHHFNVLAFP 84
              YDFK      +   L +++G   L+ NVAS+ GFT   Y     L        F VLAFP
Sbjct: 236978 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 236799

Query: 85     CNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQT-SGKEPT--- 140
              CNQF  QEP T  E+++FA   +   FP+  K+ V G   HP + YL  T  G   T   
Sbjct: 236798 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLV 236619

Query: 141    -WNFWKYLVDPDGKVVGAWDPTVPVAEIKPRI 171
               WNF  +LVD DG  V  + P   V+EI+ ++
Sbjct: 236618 KWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 236523



 Score =  103 bits (256), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
 Frame = -2

Query: 25     YDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQNYRALQQLQRDLGPHHFNVLAFP 84
              YDFK      +   L +++G   L+ NVAS+ GFT   Y     L        F VLAFP
Sbjct: 234652 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 234473

Query: 85     CNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQT-SGKEPT--- 140
              CNQF  QEP T  E+++FA   +   FP+  K+ V G   HP + YL  T  G   T   
Sbjct: 234472 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLV 234293

Query: 141    -WNFWKYLVDPDGKVVGAWDPTVPVAEIKPRI 171
               WNF  +LVD DG  V  + P   V+EI+ ++
Sbjct: 234292 KWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 234197


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 72/141 (51%)
 Frame = -3

Query: 12      LWAAACAQSEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASEXGFTDQNYRALQQLQR 71
               LW  A   +    + + AV   GK V L+KY G  +L+VNVAS       N   L ++Q+
Sbjct: 1227205 LWDLAVGMAS--VFTYSAVQ-NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQ 1227035

Query: 72      DLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYL 131
                 G   F VLAFPC QF  QEP  N EI  +      + FP+F ++ V G+ A P F+ L
Sbjct: 1227034 AYGSRRFTVLAFPCAQFANQEPLNNTEIAQWC-EDLGLLFPVFDRVNVKGSSADPLFQML 1226858

Query: 132     TQTSGKEPTWNFWKYLVDPDG 152
                   G  P WN+ KYL D  G
Sbjct: 1226857 RAQQGA-PLWNYTKYLCDRSG 1226798


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000105_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Mus musculus # Complete
         (209 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    96   2e-20
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    94   9e-20
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    30   1.7  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 80/138 (57%)
 Frame = -3

Query: 57      GRTVSLEKFKGKASLVVNVASDXRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEP 116
               G+TV L+K+ G A+L+VNVAS       + + L E+ + +G   F VLAFPC QF   EP
Sbjct: 1227148 GKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFPCAQFANQEP 1226969

Query: 117     KSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSSKKEPRWNFWKYLVNPEGQ 176
                ++ E+  +  ++ G+ FP+F ++ + G  A+P F+ ++ + +  P WN+ KYL +  G 
Sbjct: 1226968 LNNTEIAQWC-EDLGLLFPVFDRVNVKGSSADPLFQ-MLRAQQGAPLWNYTKYLCDRSGV 1226795

Query: 177     VVKFWRPEEPLEAIRPHV 194
                 +   P   ++A+R  +
Sbjct: 1226794 PRRKLEPGCSMDALRQSI 1226741


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 5/167 (2%)
 Frame = -3

Query: 22     LLSMVLCTVMLFLLQLKFLKPRTNSFYSFEVKDAKGRTVSLEKFKGKASLVVNVASDXRF 81
              LLS+    ++ FLL L      T S Y F+V  +  +   L + KG   L+ NVAS   F
Sbjct: 239376 LLSLFNTILLAFLLSLS--PQSTMSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGF 239203

Query: 82     TDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIK 141
              T   Y+T   L+ ++    F VLAFPCNQF   EP + +EV+SFA   +   FPI  K+ 
Sbjct: 239202 TKGGYETATALYNKYKHLGFMVLAFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVC 239023

Query: 142    ILGPEAEPAFRFIVDSSK-----KEPRWNFWKYLVNPEGQVVKFWRP 183
              + G    P + ++ ++ K        +WNF  +LV+ +G  V  + P
Sbjct: 239022 VNGEHEHPLYHYLKNTCKGILGTTLVKWNFTAFLVDKDGHAVCRFAP 238882



 Score = 89.0 bits (219), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
 Frame = -2

Query: 45     NSFYSFEVKDAKGRTVSLEKFKGKASLVVNVASDXRFTDKSYQTLRELHKEFGPYHFNVL 104
              +S Y F+V  +  +   L + KG   L+ NVAS   FT   Y+T   L+ ++    F VL
Sbjct: 234661 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 105    AFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSSK----- 159
              AFPCNQF   EP + +EV+SFA   +   FPI  K+ + G    P + ++ ++ K     
Sbjct: 234481 AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGT 234302

Query: 160    KEPRWNFWKYLVNPEGQVVKFWRP 183
                 +WNF  +LV+ +G  V  + P
Sbjct: 234301 TLVKWNFTAFLVDKDGHAVCRFAP 234230



 Score = 88.6 bits (218), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
 Frame = -1

Query: 45     NSFYSFEVKDAKGRTVSLEKFKGKASLVVNVASDXRFTDKSYQTLRELHKEFGPYHFNVL 104
              +S Y F+V  +  +   L + KG   L+ NVAS   FT   Y+T   L+ ++    F VL
Sbjct: 236987 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 105    AFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSSK----- 159
              AFPCNQF   EP + +EV+SFA   +   FPI  K+ + G    P + ++ ++ K     
Sbjct: 236807 AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGT 236628

Query: 160    KEPRWNFWKYLVNPEGQVVKFWRP 183
                 +WNF  +LV+ +G  V  + P
Sbjct: 236627 TLVKWNFTAFLVDKDGHAVCRFAP 236556


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 29.6 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 18     IFAVLLSMVLCTVMLFLLQLKFLKPRTNSFYSFEVKDAK 56
              + +VL   + CTV+ F   L  L+P TNSF+    ++ +
Sbjct: 503360 VLSVLSCCLQCTVLSFFAFLSLLRPTTNSFHELARREER 503476


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000096_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Mus musculus # Complete
         (254 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    30   1.7  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    30   2.5  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    29   2.9  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 30.0 bits (66), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 176     ERVRAARMLLARSPQCPVVVD 196
               +RVR AR  L R P+CP+V D
Sbjct: 2571901 KRVRVARTYLLRPPRCPLVCD 2571839



 Score = 29.6 bits (65), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 176     ERVRAARMLLARSPQCPVVVD 196
               +RVR AR  L R P+CP+V D
Sbjct: 2595706 KRVRVARTYLLRPPRCPLVCD 2595644



 Score = 29.3 bits (64), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 176     ERVRAARMLLARSPQCPVVVD 196
               +RVR AR  L R P CP+V D
Sbjct: 2586137 KRVRVARTYLLRPPHCPLVCD 2586075



 Score = 29.3 bits (64), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 240    VLEKLCTPPRHVP 252
              VL +LC PPRHVP
Sbjct: 982629 VLRRLCNPPRHVP 982667


>LmjF29_01_20050601_V5.2
               [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 29.6 bits (65), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 163     KNNVDIRQHRSLQERVRAARMLLARSPQCPVVVDTMQNQSSQLYAALPERL 213
               + NVD+  H+ +   +RA R   A   +    VD    ++ QLY +L   L
Sbjct: 1087935 EKNVDLHAHKRVDHLLRALRTARATQDRAAEAVDLTHIRAGQLYGSLAALL 1087783


>LmjF22_01_20050601_V5.2
             [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 29.3 bits (64), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 95    CTVVCLSGQKCNIWDFIQGSRPLVLNFGSCTPSFLLKFDQFKRLVFASTA 144
             C   C S     ++  +  S P +  + SC  SFL  F  F   +FAS++
Sbjct: 80407 CISACQSAVAVTLFPSLHTSTPTLRPYSSCISSFLFSFGDF---IFASSS 80267


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000097_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Mus musculus # Complete
         (263 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    34   0.13 
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    32   0.42 
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    30   2.2  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    29   4.5  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    28   8.0  

>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 33.9 bits (76), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 162    SDGWAVPGDSSLSFEVKKHRN--QEDRCAAAHQLLERFSLPPQCQV 205
              +DGW+VP      F V  HR    E   A + +L  RF LPP C V
Sbjct: 603209 ADGWSVPPSFFRHFRVNSHRKIRAELDVAGSQELRRRF-LPPPCTV 603075


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 32.3 bits (72), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 163    DGWAVPGDSSLSFEVKKHRNQEDRCAAAHQLLE-----RFSLPPQCQVVADRMDNN 213
              D W V G  S + E+     Q+  CAAA + +      R SLPPQ     DRMD++
Sbjct: 593582 DLWEVGGCGSFAAELGALGRQKTGCAAATRDVRDTIPFRVSLPPQRVESHDRMDDD 593415


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 29.6 bits (65), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 195    ERFSLPPQCQVVADRMDNNANVAYGVAFERVCIVQRRKIAYLGGKGPFSYNLQE--VRSW 252
              E  +LP + +  +D +         +  ERVC+  R ++ +   KGP S+ L++    + 
Sbjct: 284707 EHHTLPREYRHYSDSLLATLPFISSLCLERVCVCARARLPHNAKKGPASHALEDGHAHTS 284886

Query: 253    LEKNFSKRILD 263
              L+KN    I D
Sbjct: 284887 LKKNSPHSI*D 284919


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 28.9 bits (63), Expect = 4.5,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
 Frame = -2

Query: 27     LYDSVILLKHVALLLSRSKSTRGEWRRMLTSEGLR------------CVWNSFLLDAYKQ 74
              L+D++ + + V +   RS   R   RR L SE  R             ++  +   AY +
Sbjct: 119403 LHDAIPVGQPVVVDGLRSALVREHRRRRLASEQARRFVRREFFERYRRLFKLYEYFAYDK 119224

Query: 75     VKLGEDAPNSSVVHVSNPESGNN---------YASEKTADGAECHLLDFASAERPLVVNF 125
              + +G     S   HV  P   N           +S+   DGA    L      R L+  F
Sbjct: 119223 LIVGRAEDPSPPPHVLQPRMTNIGHVIKFIALLSSQSATDGALTRAL--PRDGRMLLKAF 119050

Query: 126    GSATPFTRQLPAFRQLVEEFSSVADFLLVYID---EAHPSDGWAV 167
              GSAT    QLP +     +  + +  L+ YI    E+     WA+
Sbjct: 119049 GSATDLAEQLPMWFLTQRDKHNFSSSLIRYIGPLAESEKPSAWAL 118915


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 27.7 bits (60), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 32      ILLKHVALLLSRSKSTRGEWRRMLTSEGLRC 62
               ++L+H  L LS     RG  R  LT+  LRC
Sbjct: 1988678 VVLRHQRLYLSNVAHMRGNVRSRLTTRSLRC 1988586


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000078_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Mus musculus # Complete
         (233 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    99   2e-21
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    30   1.3  
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    28   5.5  

>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
 Frame = +3

Query: 66     AVFGMGXFWGAERKFW--VLKGVYSTQVGFAGG-HTRNPTYKEVCSEKTGHAEVVRVVYR 122
              A F  G +WG E  F       + S QVGF GG   +  TY EV    TGHAEV+ ++Y 
Sbjct: 570105 ATFAAGCYWGTEHFFVRNFKDSIVSHQVGFMGGIEGKAVTYSEVTKGTTGHAEVLDLMYD 570284

Query: 123    PEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALR-------SKE 175
              PE +S+++LL  F+  H+ T   RQ  D GT YRSA++  +  Q + A         + E
Sbjct: 570285 PEKVSYKDLLSFFFRMHNSTTVNRQAGDIGTNYRSAIFYHNEEQKKEAEAYIAKLNGADE 570464

Query: 176    EYQKVLSKHNFG-PITTDIREGQVFYYAEDYHQQYLSKNPDGYC 218
              +     SK   G P  T + +   FY A + HQ YL K+P+GYC
Sbjct: 570465 KLHSSFSKAFAGAPCITGLEKAGTFYPAHEGHQNYLEKHPNGYC 570596


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 30.4 bits (67), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 192    DIREGQVFYYAEDYHQQYLSKNP 214
              ++   + + Y EDYHQ Y SKNP
Sbjct: 626331 EVNPDEEYRYTEDYHQLYYSKNP 626399


>LmjF20_01_20050601_V5.2
            [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
            This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 28.1 bits (61), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 7    RALQLLSSANPVRRMGDSASKVISAEEALPGRTE-PIPVTAKHHVSGNR 54
            R+L +LSS       G S S  I     L GR + P PVT+ HHV+  R
Sbjct: 3126 RSLTMLSSRPLATTTGRSTS--IRKSRWLRGRCDHPNPVTSSHHVTDRR 2986


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000106_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Mus musculus # Complete
         (858 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...    31   4.3  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    31   4.5  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    30   8.9  

>LmjF05_01_20050601_V5.2
             [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score = 30.8 bits (68), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%)
 Frame = +3

Query: 518   MKKGKQREIPKAKKPTSLKKIILKERQERMQQRLQESAVSLTVASDDSQDVESGASNQTP 577
             M    Q E  + +  T   ++ L++R + +++  QES  S TVA+D+S    S  +  T 
Sbjct: 16656 MNHTLQLEKDRRRAETERLQLALQDRDQLIRKLHQESQSS*TVAADNS*ARLSQCAQATS 16835

Query: 578   SQDNPTGPEKTEESVSSTPVVEGESEEP 605
             +  +P  P+    ++  +P   G  +EP
Sbjct: 16836 TALSPPAPQNVVRAILKSPGRGGGRQEP 16919


>LmjF29_01_20050601_V5.2
               [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 30.8 bits (68), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 10/150 (6%)
 Frame = +1

Query: 547     MQQRLQESA-VSLTVASDDSQDVESGASNQTPSQDNPTGPEKTEESVSSTPVVEG----- 600
               +++RLQ+S    + VA    QD E+G    T   D     +  +        VEG     
Sbjct: 1088278 IERRLQQSRNCVIVVAEGFGQDWETG----TGGHDASGNKKLVDIGFILKKEVEGWLRAN 1088445

Query: 601     ESEEPAGTEFQRDP----EACQPAPDSATFPKIHSRRFRDYCSQMLSKEVDACVTGLLKE 656
               + + P GT    DP     AC P+ + A F           C+ + +  V   + G    
Sbjct: 1088446 KEKFPQGTVKYIDPSYMIRACPPSSNDALF-----------CTNLATLAVHEAMAGATGC 1088592

Query: 657     LVRFQDRMYQKDPVKAKTKRRLVLGLREVL 686
               ++  +   Y   P+KA T  R V+ LR  L
Sbjct: 1088593 IISMRYNNYILVPIKAATSVRRVVSLRGAL 1088682


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 30.0 bits (66), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 145    KKKPSDERRACEEQKSSSRRADNAVPCEARPARGSSHLSSR 185
              K  PS ERR   EQ    R      PC  R  RG+   S R
Sbjct: 484702 KTTPSQERREACEQSGGVRDCRTTTPCALRSLRGNREKSRR 484580


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000107_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Mus musculus # Complete
         (392 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   251   5e-67
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   9.3  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  251 bits (642), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 158/376 (42%), Positives = 210/376 (55%), Gaps = 14/376 (3%)
 Frame = -3

Query: 7       FNPETYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGI 66
               F+P +  L   F+LT +T LKG  CK+PQ  L  LL+ L     Q+D            +
Sbjct: 2095666 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSATPGQKD------------V 2095523

Query: 67      GMDTCVIPLRHG-----GLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDN 121
               GMD  ++PL H       L LV TTD+ +P V DP++ G+I  ANVLSDLY+MG+ +CD 
Sbjct: 2095522 GMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDT 2095343

Query: 122     MLMLLGVSNKMTDRERDKVIPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQ 181
               MLMLL  S +M + ER      I++GF + A  A T+VTGGQTV+NPW ++GGVA  V  
Sbjct: 2095342 MLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTVMNPWPLIGGVAMAVVS 2095163

Query: 182     PNEFIMPDNAV-PGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLV--VTQEDVELAYQ 238
                 E + P   +  GD+LVLTKPLG QVAV + QWL  P    +  +   ++ E++E  Y 
Sbjct: 2095162 EAEMVRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYN 2094983

Query: 239     EAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQR-----NEVSFVIHNL 293
                A  +M RLNR  A LM    AH ATD+TGFGILGHA N    Q        +  V+  L
Sbjct: 2094982 MATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDAPRSLCLVLERL 2094803

Query: 294     PVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQ-AARFCAEIKSPKYGEGHQAW 352
               P+     A SK   + + L+ G   ETSGGLL+  P    AA FCAE+ +     G  +W
Sbjct: 2094802 PMFKTAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTAAAAFCAELTA--VDGGCPSW 2094629

Query: 353     IIGIVEKGNRTARIID 368
               I+G VE  +R    +D
Sbjct: 2094628 IVGHVE--DRATNAVD 2094587


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.5 bits (62), Expect = 9.3,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 49/134 (36%)
 Frame = -2

Query: 259    NAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCP 318
              +AH  T +T   I  H  N A++Q  E +     LP   K    S     +  L      
Sbjct: 389658 HAHTHTHMTRTCICLHICN-AQEQEKEATQQQQPLPPPRKKKGRSACIEALLTLRMTMRV 389482

Query: 319    ETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ 378
              +  GG    L R  +            G GH AW++ ++      A+ + + R I VA  
Sbjct: 389481 DPGGGNRCSLTRLLSVSVSGPPHRFACGGGHTAWVVRLMLSLTPAAKRMGRERFINVAAD 389302

Query: 379    VATQNVNPTPGATS 392
               A    N  P A +
Sbjct: 389301 TANSAQNR*PAAAA 389260


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Mus musculus # Complete
         (452 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   246   2e-65
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    29   5.8  
LmjF03_01_20050601_V5.2 [~/leish/curated/chr3/LmjF03_01_20050601...    29   7.8  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    29   8.7  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  246 bits (628), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 174/432 (40%), Positives = 225/432 (52%), Gaps = 15/432 (3%)
 Frame = -3

Query: 5       AAAGASGETMAALVAAEGSLGPAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSGMKGXG 64
               A  G +  T    ++ +     AG S G        F+P +LG    ++LT ++ +KG  
Sbjct: 2095774 AKRGEAASTPTPFMSHKRPQSSAGESNGAVDLKTPRFDPVSLGLPAEFQLTDYTRLKGCS 2095595

Query: 65      CKVPQETLLKLLEGLTRPALQPPLTSGLVGGQEETVQEGGLSTRPGPGSAFPSLSIGMDS 124
               CK+PQ  LL LL+ L                          S  PG         +GMD 
Sbjct: 2095594 CKLPQPKLLALLQEL--------------------------SATPG------QKDVGMDC 2095511

Query: 125     CVIPLRHG-----GLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLML 179
                ++PL H       L LV TTDFF+P V DP++ G+I  ANVLSDLY+MGI +CD MLML
Sbjct: 2095510 SIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLML 2095331

Query: 180     LSVSQSMSEKEREKVTPLMIKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQQNEF 239
               L+ S  M E ER   T  ++KGF + A    T VTGGQTV+NPW +IGGVA  V  + E 
Sbjct: 2095330 LAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTVMNPWPLIGGVAMAVVSEAEM 2095151

Query: 240     IMPDSAV-VGDVLVLTKPLGTQVAANAHQWLDNPEKW--NKIKMVVSREEVELAYQEAMF 296
               + P   +  GD+LVLTKPLG QVA N  QWL  P       I   +S EE+E  Y  A  
Sbjct: 2095150 VRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYNMATD 2094971

Query: 297     NMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQK-----NEVSFVIHNLPIIA 351
               +M  LNR  A LM    AH ATD+TGFGILGH+ N    Q        +  V+  LP+  
Sbjct: 2094970 SMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDAPRSLCLVLERLPMFK 2094791

Query: 352     KMAAISKA-SGRFGLLQGTSAETSGGLLICLPREQ-AARFCSEIKSSKYGEGHQAWIVGI 409
                  A SK  + ++ LL+G SAETSGGLL+  P    AA FC+E+  +    G  +WIVG 
Sbjct: 2094790 TAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTAAAAFCAEL--TAVDGGCPSWIVGH 2094617

Query: 410     VEKGNRTARIID 421
               VE  +R    +D
Sbjct: 2094616 VE--DRATNAVD 2094587



 Score = 30.8 bits (68), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -3

Query: 4      AAAAGASGETMAALVAAEGSLGPAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSGMKGX 63
              A  AG SG   AA   A   L PA   AG   +++  + P+ +  SP+W+  S   + G 
Sbjct: 408946 AVEAGRSGSACAAPQVAALPLEPAPRGAGVGETHFH-YPPRHVAHSPAWQSCSTRELSGQ 408770

Query: 64     GC 65
              GC
Sbjct: 408769 GC 408764


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 29.3 bits (64), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 247    VGDVLVLTKPLGTQVAANAHQWLDNPEKWNKIK 279
              VGD  +LT P    V A  HQ +D P + + ++
Sbjct: 297833 VGDTCILTSPAALPVGATVHQMVDWPRRMDHMQ 297931


>LmjF03_01_20050601_V5.2
              [~/leish/curated/chr3/LmjF03_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 384518

 Score = 28.9 bits (63), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -1

Query: 181    SVSQSMSEKEREKV---TPLMIKGFRDAAEEGGTAVTGG 216
              ++S++M  KE +K+   TP  I+   DAAE+GG A  GG
Sbjct: 159461 TMSETMKGKENKKIYAPTPTRIQK*GDAAEDGGRAGDGG 159345


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.9 bits (63), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 259    TQVAANAHQWLDNPEKWNKIKMVVSREEVELAYQEA 294
              TQ+A +   W+D  EK  + ++V+S  E  LAY  A
Sbjct: 112776 TQIATSVRLWVDGEEKGERARVVISNRE-RLAYTAA 112880


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000109_1.0 # Protein # Selenoprotein 15 (Sel15) # Mus
musculus # Complete
         (162 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    27   5.2  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    27   5.6  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    27   6.4  

>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 27.3 bits (59), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 10     RPALGLR--LLLATAFQAASALGAEFASEACRELGFSSNLLCSSC 52
              +P LG     LLAT+ +AA   GAE  ++  R  G S++L   +C
Sbjct: 475647 QPQLGASPLALLATSVEAAVETGAETIAQQSRAGGASTSLAAEAC 475781


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 27.3 bits (59), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 48     LCSSCDLLGQFNLLPLDPVCRGCCQEEA 75
              LCS+C     + L P D + RGC    A
Sbjct: 111618 LCSACRTTSSWTLYPQDSMFRGCSSSNA 111535


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 26.9 bits (58), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 58      FNLLPLDPVCRGCCQEEA 75
               F+ LP  P+CR CC+  A
Sbjct: 1084445 FSALPPPPICRACCRANA 1084498


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000110_1.0 # Protein # Selenoprotein H (SelH) # Mus
musculus # Complete
         (116 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    26   5.6  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    26   6.8  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    26   6.9  
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    26   7.2  
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    25   8.7  

>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 25.8 bits (55), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 69     RRGSFEVTLLRSDNSRVELWTGIK 92
              RR S   ++L S++SR ELWTG++
Sbjct: 421674 RRESSAASMLASNSSRGELWTGLQ 421745


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = +2

Query: 2       APHGRKRKAGAAPMETVDKREKLAEGATVVIEHCTSXRVYGRHAAALSQALQLEAPELPV 61
               A HGR  ++G    +  D  E +       +  C   R+         Q LQL     P 
Sbjct: 1385267 AEHGRVAQSGEVVHDVGDMHESVGHHGVQALHRCRIVRL-------TFQLLQLRHVRAPD 1385425

Query: 62      QVNPSKPRR 70
                + P  PRR
Sbjct: 1385426 LLRPEHPRR 1385452


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 65     PSKPRRGSFE---VTLLRSDNSRVELWTGIKKGPPRKLKFP 102
              PS  +RGS     +TLL S +    LW   +  PP +L  P
Sbjct: 838508 PSTTKRGSCAKTCLTLLCSTSVEPPLWKARRPTPPERLPLP 838386


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 25.8 bits (55), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
 Frame = -1

Query: 5      GRKRKAGAAPMETVDKREKLAEGATVVIEHCTSXRVYGRHAAA--------LSQALQLE- 55
              GR+   G    +  +K  +  EG       CT  R++ R AA         LSQAL +E 
Sbjct: 874427 GRRTGNGTRQEQRAEKTRRNREGPARCFMGCTCFRLHARDAAVFW*PRFVLLSQALSVER 874248

Query: 56     APELPV 61
               P  P+
Sbjct: 874247 TPLFPI 874230


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 25.4 bits (54), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 54     LEAPELPVQVNPSKPRRGSFEV 75
              L AP LP+Q +P+ PRR S+ +
Sbjct: 117950 LPAPSLPIQSSPAMPRRLSWRL 118015


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000111_1.0 # Protein # Selenoprotein I (SelI) # Mus
musculus # Complete
         (402 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   102   7e-22
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    41   0.001
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    30   2.4  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    30   3.8  
LmjF02_01_20050601_V5.2 [~/leish/curated/chr2/LmjF02_01_20050601...    29   7.3  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    28   8.5  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  102 bits (253), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 183/425 (43%), Gaps = 38/425 (8%)
 Frame = -3

Query: 5       EYVSPEQLSGFDKYKYSALDTNPLSLYIMHPFWNTIVKKKKQVFPTWLAPNLITFSGFML 64
               EY+ P  L    KYKYS+ D + +S Y++  +WN +V     + P  +APN ITF+GF++
Sbjct: 2267419 EYIPPAYLPNLRKYKYSSTDLSIVSRYVLQRYWNFVV----NLVPMTIAPNCITFTGFLI 2267252

Query: 65      LVFNFLLLTY---FDPDFYASAPGHKHVPDWVWIVVGILNFAAYTLDGVDGKQARRTNSS 121
                + +  LL Y   F+   Y         P W         FA  TLD +DGKQARRT + 
Sbjct: 2267251 GMSSTALLLYYYFFEEGVY---------PSWCLYYAAFALFAYQTLDAIDGKQARRTGTG 2267099

Query: 122     TPLGELFDHGLDSWSCVYFVVTVYSIFGRGPTGVSVFVLYLLLWVVLFSFILSHWEKYNT 181
               +PLGELFDHG D++     ++ V        T V  F L  +  + LF+ I   WE+++T
Sbjct: 2267098 SPLGELFDHGCDAFLTPLVLLNVS--LATYMTSVERFWLSTISSMSLFTVI---WEQFST 2266934

Query: 182     GVLFLPWGYDISQVTI--SFVYIVTAVVGVEAW-----------YEPFLFNF-------- 220
               G   L +    ++  I    ++IV+ V G   W           Y P L  F        
Sbjct: 2266933 GTFDLGYVNGPAEGIILNCVLFIVSGVYGKSIWDISAVGPYDVAYPPVLSPFFPGCSGTV 2266754

Query: 221     ----LYRDLFTAMIIGCALCVTLPMSLLNFFRSYKSNTLKHKSVYEAMVPFFSPCLLFTL 276
                   +   LF   +I C   +     L+N   +    T+ H S    M+   +P +  T 
Sbjct: 2266753 HIESVRSVLFILFLISCPFTI-----LVNVVHTVLRPTV-HASKVTPMLA-LAPIITMTA 2266595

Query: 277     CTVWILWSPSDILEIHPRIFYFMVGTAFANITCQLIVCQMSSTRCPTLNWLLLPLLLVVA 336
                 V +     ++    P       G   +    +L + ++S+    T+NW ++   L +A
Sbjct: 2266594 LVVHVFVVFPNLTVRFPFAMEISYGLLMSITVTRLTLSRLSAMPYRTVNWHIVLFFLALA 2266415

Query: 337     AVI-------VGAATSRLESALLYTLTAAFTLAHIHYGVQVVK---QLSRHFQIYPFSLR 386
               A            +   +E+ L +TLT     A + YG  ++    Q++R+  I   +++
Sbjct: 2266414 AASAMHYAGDASVSHDVVETVLGWTLTGLSVFAAMQYGHMILSAFTQIARYLSISIMTIK 2266235

Query: 387     KPNSD 391
                  SD
Sbjct: 2266234 PNKSD 2266220


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 41.2 bits (95), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 80/219 (36%), Gaps = 30/219 (13%)
 Frame = +2

Query: 24     DTNPLSLYIMHPFWNTIVKKKKQVFPTWLAPNLITFSGFMLLVFNFLLLTYFDPDFYASA 83
              D + ++ Y+  PF++ +V    Q +P    PN +T  G    +   +LL    P      
Sbjct: 333146 DPSIMAEYLFFPFYDYVV----QFYPQSWVPNKVTLVGIFSTISASVLLLSSMPAGLQFQ 333313

Query: 84     PGHKHV------------------------------PDWVWIVVGILNFAAYTLDGVDGK 113
               G   +                              P+ + I+ G LN      D  DG+
Sbjct: 333314 SGRMQLLPASLVEDAAMLQMPPLSPTQMTPILSFISPNLMLILCGSLNVLYCVADNTDGR 333493

Query: 114    QARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGPTGVSVFVLYLLLWVVLFSFIL 173
               ARR   ++ +GE  DHGLD  + +     V+++ G     V+   L      + F  +L
Sbjct: 333494 LARRDKKTSVIGEYLDHGLDCVTSLLSTCCVFALVGSLCNMVTSVCL------IAFVTVL 333655

Query: 174    SHWEKYNTGVLFLPWGYDISQVTISFVYIVTAVVGVEAW 212
               H   +   +    WG  I+ V  + +     + GV  W
Sbjct: 333656 CHTLHFEKNIFI--WGNRIATVDEAMI-----LFGVSMW 333751



 Score = 31.2 bits (69), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 106    TLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIF 148
              T   +DG  ARR  S+T LG++F     S + V+  +T+  +F
Sbjct: 567000 TCGSLDGVHARRCRSATSLGDIFSRICSSMARVFMALTLLEVF 567128


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.4 bits (67), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 271     CLLFTLCTVWILWSPSDILEI 291
               CL+F +CT W+L SP  IL +
Sbjct: 1934171 CLVFVICTCWVLVSPFCILNL 1934233


>LmjF22_01_20050601_V5.2
             [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 29.6 bits (65), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
 Frame = -3

Query: 267   FFSPCLLFTL-----CTVWILWSPSDIL 289
             F+SPCLLF L     C  W+ W   D L
Sbjct: 30440 FYSPCLLFVLASLPFCV*WLCWGRGDAL 30357


>LmjF02_01_20050601_V5.2
              [~/leish/curated/chr2/LmjF02_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 355714

 Score = 28.9 bits (63), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = -3

Query: 75     FDPDFYASAPGHKHVPDWVWIVVGILNFAAYTLDGVDGKQARRTNSSTPLGELFDHGLDS 134
              +DP  +++ P H  VPDW        +     LD     Q RR   +T   + F   LD 
Sbjct: 166499 YDPSIHSTKPRHGGVPDWHAAASASADLPDAALD-----QFRRDCIATGADD-FRMPLDE 166338

Query: 135    WSCVYFVVTVYS 146
              W CV +    YS
Sbjct: 166337 W-CVRWWSHQYS 166305


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 28.5 bits (62), Expect = 8.5,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 24/83 (28%)
 Frame = -3

Query: 216     FLFNFLYRDLFTAM---------------------IIGCAL-CVTL-PMSLLNF-FRSYK 251
                L  FLYR LFTA                      + GCAL C  L P+  L+  FR++ 
Sbjct: 1066311 LLQRFLYRRLFTARRTTARCTSFLRAAGKERPILRLCGCALLCFRLHPLPQLSTSFRTWA 1066132

Query: 252     SNTLKHKSVYEAMVPFFSPCLLF 274
                    H   + A+VP+  PCLLF
Sbjct: 1066131 QCVT*HP--FPALVPWIRPCLLF 1066069


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    29   0.51 
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    29   0.60 
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    27   1.6  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    26   4.8  
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    26   5.4  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    26   6.0  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    25   6.2  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    25   6.9  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    25   7.7  
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    25   8.1  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    25   8.3  
LmjF10_01_20050601_V5.2 [~/leish/curated/chr10/LmjF10_01_2005060...    25   8.4  
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    25   8.6  

>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 29.3 bits (64), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 30     IAEFVVFFFKTLLQQDVKKRRGYGSSSDSRYDDGRGPPGNPPRRMGRISHLR 81
              +A   VFF +T++   +K+RRG+  S  +  +DG  P G    RM  + H+R
Sbjct: 215890 VAILTVFFIETMIALRLKRRRGF-RSVGAVCNDGIAPTGP---RMSTLRHVR 216033



 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +2

Query: 55    SSDSRYD--DGRGPPGNPP 71
             SS SR D  DGRGPP  PP
Sbjct: 71231 SSQSRRDSQDGRGPPPQPP 71287


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 28.9 bits (63), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 33      FVVFFFKTLLQQDVKKRRGYGSSSDSR 59
               F +FFF TL+ +  K+RRG+  SS ++
Sbjct: 1580524 FALFFFFTLMSEVCKRRRGWLHSSSAQ 1580604


>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 27.3 bits (59), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 13/40 (32%)
 Frame = +1

Query: 41      LLQQDVKKRRGYGSSSDSRYD-------------DGRGPP 67
               LL+++ ++RRGY +++DS+Y              DG GPP
Sbjct: 1262098 LLKKEERRRRGYQTTADSKYTMRQRKPRF*TEARDGEGPP 1262217


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 25.8 bits (55), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
 Frame = -3

Query: 18     WRVSFLTDFFW----GIAEFVVF------FFKTLLQQDVKKRRGYG 53
              WR +    F W     +A F++F      FF+ L + D +K+R +G
Sbjct: 571923 WRTTSQISFSWRSFIALAHFLLFAPLRTFFFQCLCRVDEEKQRAHG 571786


>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 25.8 bits (55), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 66     PPGNPPRRMGRISHLRGPSPPPM 88
              PP  PPRRM  IS      PP +
Sbjct: 472363 PPATPPRRMAVISLDPSSGPPAL 472295



 Score = 25.8 bits (55), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 54    SSSDSRYDDGRGPPGNPPRRMGRISHLRGPSPPPMAGGXGR 94
             SS   +   G GPP  P ++  R   L   S PP+A   G+
Sbjct: 23518 SSLQQKRSIGSGPPKQPAKKESRGVRLPPISRPPVARRHGK 23396


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 39     KTLLQQDVKKRRGYGSSSDSR 59
              K L    V KR+GYG+ SDSR
Sbjct: 837720 KVLQHWCVGKRQGYGTMSDSR 837658


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 25.4 bits (54), Expect = 6.2,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 63     GRGPPGNPPRRMGRISHLRGPSPPPMAGG 91
              GRG P   PRR G+ S    P  PP A G
Sbjct: 316072 GRGGPTTAPRRAGKTSTATKPPSPPAARG 315986


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 25.4 bits (54), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 31     AEFVVFFFKTLLQQDVKKRRGYGSSSDSRYDDGRGP 66
              AEFV F F  L     K+R    S + +   D RGP
Sbjct: 119174 AEFVDFIFGLLCYNPAKRRTAKESIAHAWLSDVRGP 119067


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 25.4 bits (54), Expect = 7.7,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 64     RGPPGNPPRRMGRISHLRGPSPPPMAG 90
              RGP G  P R     H  GPS PP+ G
Sbjct: 624037 RGPKGARPNRR---RHRAGPSSPPLTG 623966


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 25.0 bits (53), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 70     PPRRMGRISHLRGPSPPPMAGGXG 93
              PP R   ++HL   +PPP  G  G
Sbjct: 535930 PPTRSRPVAHLMASTPPPQNGNFG 536001


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 25.0 bits (53), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +3

Query: 49     RRGYGSSSDSRYD---DGRGPPGNPPRRMGRISHLRGPSPPPMAGGXG 93
              RR  GS +D+R       R  P   PRR  R +    PSPP  A   G
Sbjct: 741609 RRAAGSGADARLQRIRPCRSAPARMPRRRSRSTFAVSPSPPTAATPAG 741752


>LmjF10_01_20050601_V5.2
              [~/leish/curated/chr10/LmjF10_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 570864

 Score = 25.0 bits (53), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 48     KRRGYGSSSDSRYDDGRGPPGNPPRRMGRISHLRGPSPPPMA 89
              +RR   + SD R+DDG             + H RGP P P++
Sbjct: 171594 RRRSDSARSDVRHDDGS------------LRHRRGPLPAPVS 171683


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 25.0 bits (53), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 72     RRMGRISHLRGPSPPPMAGGXGR 94
              R +GR +H R  SPP +A   GR
Sbjct: 380147 RELGRYAHTRTSSPPLIASMHGR 380079


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000113_1.0 # Protein # Selenoprotein M (SelM) # Mus
musculus # Complete
         (145 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    28   2.3  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    27   5.0  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    27   7.3  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    27   7.7  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    26   9.3  

>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 28.1 bits (61), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 5      LSPPSLLLLLAALVAPATSTTNYRPDWNRLRGLARGR 41
              LSP ++     A      STT  R  W+R RG AR R
Sbjct: 508165 LSPATVPASTMARSTSCVSTTFGRSSWSRSRGCARSR 508275


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 26.9 bits (58), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 41      RVETCGGXQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQE 91
               R E CGG +  R ++  A +T  + +   LV K   GAD    L  R +++
Sbjct: 1701150 RREGCGGHRAGRQRDGTATLTAALLVLRQLVAKQFIGADAPPRLAPRLFKD 1700998


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 26.6 bits (57), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 68     HNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINAL 108
              H L  +HL G      LLS      E +P S+  R+E N +
Sbjct: 536907 HALHPQHLSGPARREALLSLFLHSFEHVPFSRWVREESNGI 536785



 Score = 26.2 bits (56), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 116     RKSAPEAQVPPEYLWAPAKPPEEASEHDDL 145
               R SAP  +  P   W P +PP++ ++   L
Sbjct: 1222671 RHSAPPQRQQPMLRWPPRRPPQQRAQTSTL 1222760


>LmjF21_01_20050601_V5.2
             [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 26.6 bits (57), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 116   RKSAPEAQVPPEYLWAPAKPPEEAS 140
             R++ P AQ PP   W P  PP   S
Sbjct: 40914 RRACPAAQTPPPRRWQPCTPPAPQS 40840


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 26.2 bits (56), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 5      LSPPSLLLLLAALVAPATSTTNYRPDWNRLRGLA 38
              LS P+LL LLA  V  A +T     DW     LA
Sbjct: 239154 LSRPTLLRLLAPAVISAVATLTLECDWRVFVALA 239053


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus
musculus # Complete
         (557 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    36   0.092
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    32   1.7  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    32   1.8  
LmjF08_01_20050601_V5.2 [~/leish/curated/chr8/LmjF08_01_20050601...    31   3.1  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    30   5.2  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    30   7.2  

>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 35.8 bits (81), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 155    RNWTTAASPSAAFAARHFRPFLPPPGQELGQPWWIIPGELSVFTGYLSNNRFYPPPPKGK 214
              R  +TAA+PSA + AR   P  P     L + WW  P   ++      + R   PP +G+
Sbjct: 231898 RGSSTAATPSACWRARRMLPAAPNRSSSLSRVWWR*PTRRAICVAVTRSGRPTTPPTQGR 232077


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 173    RPFLPPPGQELGQPWWIIPGELSVFTGYLSNNRFYPP 209
              RP LPP   E   P+W  P + +  +GY+    F+PP
Sbjct: 415255 RPLLPPDEFEQSVPYW--PAQQTHKSGYIYLGLFFPP 415151


>LmjF28_01_20050601_V5.2
             [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 27/49 (55%)
 Frame = +2

Query: 24    RRRARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDG 72
             RRR+RA+A    L   AA VAA R C  LA     A Q S L +LGT G
Sbjct: 62267 RRRSRAVADRTGLQGTAARVAALRLCRQLAQVVLLA-QVSGL-LLGTVG 62407


>LmjF08_01_20050601_V5.2
             [~/leish/curated/chr8/LmjF08_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 574972

 Score = 30.8 bits (68), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 3     QARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAAR 47
             Q  P+ARRP S  P A P+P   RA+++       A AA++   R
Sbjct: 55639 QRVPSARRPSSTPPAAAPSPEMGRAKSVPSQCTGAAGAASMGTYR 55505


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 30.0 bits (66), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 6      PAARRPHSPDPGAQPAPPRRRAR--ALALLGALLAAAAAVAAARACALLADAQAAARQES 63
              P A     P   +QP P R R    A   +GALL   A+  A RA    A   A AR+ S
Sbjct: 440744 PGAASTSPPRAASQPQPSR*RPFT*APTKVGALLPVPASCEAVRADTSAASLGARARKRS 440565

Query: 64     ALKVLGT 70
                + +GT
Sbjct: 440564 CRESMGT 440544


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 29.6 bits (65), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 2      GQARPAARRPHSPDPGAQPAPPRRR-ARALALLGALLAAAAAVAAARACALLADAQAAAR 60
              G  R AA RP  P    +P P RRR AR  ++ G      A+    ++  L   AQ A  
Sbjct: 951483 GACRTAATRPSVPPAATRPGPQRRRHARRTSVAGRRAWPCAS*LPPKSTTLPRRAQCAGH 951304

Query: 61     QESALKVLGTDG 72
                +   V   +G
Sbjct: 951303 SGAPAAVSRPNG 951268


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000115_1.0 # Protein # Selenoprotein S (SelS) # Mus
musculus # Complete
         (190 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    35   0.046
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    31   0.56 
LmjF01_01_20050601_V5.2 [~/leish/curated/chr1/LmjF01_01_20050601...    29   1.6  
LmjF12_01_20050601_V5.2 [~/leish/curated/chr12/LmjF12_01_2005060...    29   2.4  
LmjF16_01_20050601_V5.2 [~/leish/curated/chr16/LmjF16_01_2005060...    28   4.0  
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    28   4.5  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    28   4.9  
LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    27   7.1  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    27   7.9  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    27   8.3  
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    27   9.1  

>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 34.7 bits (78), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
 Frame = -3

Query: 4       DEEPLSARPALETESLRFLHVTVGSLLASYGWYILFSCILLYIVIQRLSLRL-RALRQRQ 62
               DE P   R ALE  + R L    G++ AS+   +   C+ ++     ++ +    LR+R 
Sbjct: 1090220 DEWP---REALEGVARRMLQDMAGAVPASFHEKLPQLCVDVHAATTEMAQQYYDELRRRY 1090050

Query: 63      LDQAETVLEPDVVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRRQKIEM 118
                    + LE    ++  +AL  +R    E   AQVE   EK+R+ EE   + K+E+
Sbjct: 1090049 YITPTSYLE---FIETYKALLQSRRSRVEAQLAQVENGTEKMRETEETITKMKVEI 1089891


>LmjF29_01_20050601_V5.2
               [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 30.8 bits (68), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 112     RRQKIEMWDSMQEGRSYKRNSGRPQEEDGPGPSTSSVIPKGKSDKKPLRGGGYNPLTGE 170
               R + +E+ +  +  R   R + RP   DG  P   ++  +  +   P+RG G  P TGE
Sbjct: 1095979 RTRSVELPNCTRRQRRI-RLAARPVRRDGHAPHVHALPHQEHTTHAPMRGAGLPPFTGE 1096152


>LmjF01_01_20050601_V5.2
              [~/leish/curated/chr1/LmjF01_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 268984

 Score = 29.3 bits (64), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 140    GPGPSTSSVIPKGKSDKKPLRGGGYNPLTGEGGGTCSWRPG 180
              G G + + +     + + PLR G      G+GGG   WRPG
Sbjct: 159408 GEGDAEAPIFDGCPATRPPLRLGAVFVRRGDGGGRLCWRPG 159286


>LmjF12_01_20050601_V5.2
              [~/leish/curated/chr12/LmjF12_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 675347

 Score = 28.9 bits (63), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 100    HKEKLRQLEEEKRRQKIEMWDSMQEGRSYKRNSGRPQEEDGPGPSTSSVIP 150
               + + R L +  RR    +  + Q  R+ K+N+G  Q   GP PS  S  P
Sbjct: 276622 QRARRRVLPDSGRRVSCNL--AGQSLRTVKKNTGTQQSRSGPSPSLRSCSP 276476


>LmjF16_01_20050601_V5.2
              [~/leish/curated/chr16/LmjF16_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 714659

 Score = 28.1 bits (61), Expect = 4.0,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 44/87 (50%)
 Frame = -3

Query: 51     LSLRLRALRQRQLDQAETVLEPDVVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLEEE 110
              L  +L A R+ QLD +  V   + + K  +  AA          A+V+++ E +R+L+EE
Sbjct: 234441 LQTQLDAFRKDQLDVSNAVRMAEELAKSVQGKAA----------AEVQRYLEAVRELQEE 234292

Query: 111    KRRQKIEMWDSMQEGRSYKRNSGRPQE 137
                R +IE+  ++      K+++ R  E
Sbjct: 234291 LVRLRIEVTRALDAENIAKQDALRIAE 234211


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 28.1 bits (61), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 83     AAARLRMQEDLNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQE 124
              AAA+  + ++L+A  EKHK  L QL+    R+  ++    QE
Sbjct: 408584 AAAQTALTDELDALKEKHKAALAQLQTYHAREAAQLLKQQQE 408459


>LmjF25_01_20050601_V5.2
             [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 27.7 bits (60), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +1

Query: 141   PGPSTSSVIPKGKSDKKPLRGGGYNPLTGEGGGTCSWRPGRRGPSSG 187
             P P  S + P  +S   PLR  G+ P     G  CSWR G  G S+G
Sbjct: 75409 PVPCCSLISPLRRS--LPLRLPGWAPRPS--GSACSWRAGEVGSSNG 75537


>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 27.3 bits (59), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 160    RGGGYNPLTGEGGGTCSWRPGRRGPSSGG 188
              RGGG +P    GGG C    G R PS G 
Sbjct: 329831 RGGGEDPARFHGGGRCEASGGARSPSGGA 329745


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 26.9 bits (58), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 44/90 (48%)
 Frame = -1

Query: 49      QRLSLRLRALRQRQLDQAETVLEPDVVVKRQEALAAARLRMQEDLNAQVEKHKEKLRQLE 108
               +RL ++L  +R R+L+         +  K+QE    ++L+ +EDL  ++E   EKL +L 
Sbjct: 2280987 ERLVMQLLRIRNRELE---------LETKQQEL--DSKLKQEEDLRKELEVEHEKLAKL- 2280844

Query: 109     EEKRRQKIEMWDSMQEGRSYKRNSGRPQEE 138
                   R   E  + M EG   K  + +  +E
Sbjct: 2280843 ----RSVQETLEKMNEGLEAKYKAVKEDDE 2280766



 Score = 26.9 bits (58), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 34      GWYILFSCILLYIVIQRLSLRLRALRQRQLD 64
               GW    SCIL  I++   S+R+ AL     D
Sbjct: 2632270 GWAFAMSCILFCILVMFFSVRILALASLSAD 2632178


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 26.9 bits (58), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 79      QEALAAARLRMQEDLNAQVEKHKEKLRQLEEEKRRQK 115
               Q   AAAR  ++ D    V K +EK R++E EKR+++
Sbjct: 1329470 QRQGAAARTCLRADTRMTVTKRQEKKREVETEKRKER 1329580


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 26.9 bits (58), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 169    GEGGGTCSWRPGRRGPSSG 187
              G G G C+ RP  RGP++G
Sbjct: 577135 GGGAGNCACRPHARGPTAG 577191


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000116_1.0 # Protein # Selenoprotein T (SelT) # Mus
musculus # Complete
         (195 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    52   3e-07

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
 Frame = +3

Query: 27     PSKRLKMQYATGPLLKFQICVSXGYRRVFEEYMRVISQRYP---DIRIEGENYLPQPIYR 83
              P+++L   +A    L+   C   GY + FE+  + +    P   ++RI G  Y P P  R
Sbjct: 510303 PNRQLAAVHA----LEVLYCTG*GYAKYFEDMKQQLQHTLPNAQEVRIVGGTY-PTPPAR 510467

Query: 84     HIAS------FLSVFKLVLIGLIIVGKDP--FAFFGMQAPSIWQWGQENKVYACMMVFFL 135
               +A+      FL+   + L G  +V   P    F   Q   +   G            FL
Sbjct: 510468 ALAAKVCSTAFLASLGVALAGQQLVFLPPTVLNFIAQQRGMLIGAG------------FL 510611

Query: 136    SNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDS 189
               NMI      TGAFE++L+   ++SKL++G +P++ ++ +I+  +  L+ + DS
Sbjct: 510612 LNMIGGALGQTGAFEVSLDGELIFSKLQAGAVPAVAEIRRIVLQKTLLDKYGDS 510773



 Score = 27.3 bits (59), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 84    HIASFLSVFKLVLIGLIIVGKDPF 107
             H+  FLS+F LVL+GL++  +  F
Sbjct: 89770 HLPLFLSIFWLVLLGLVLCSRGFF 89841


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000117_1.0 # Protein # Selenoprotein W1 (SelW1) # Mus
musculus # Complete
         (76 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done

 ***** No hits found ******


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000118_1.0 # Protein # Selenoprotein W2 (SelW2) # Mus
musculus # Complete
         (115 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    36   0.004
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    27   3.7  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    27   3.8  
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    27   4.0  

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 36.2 bits (82), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +3

Query: 55     IESRLGGTGAFEIEINGQLVFSKLENGGFP 84
              I   LG TGAFE+ ++G+L+FSKL+ G  P
Sbjct: 510621 IGGALGQTGAFEVSLDGELIFSKLQAGAVP 510710


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -3

Query: 1       MSGEPAPVSVVPPPGEVEAGSGVHIVVEYCKPXGFEATYLELASAVKEEYPGIEIESRLG 60
               +S  PAP S  PP   V AG         C+P G     L L ++ + E     ++SR  
Sbjct: 1530226 LSAVPAPNSTHPPASPVAAG---------CRPLGGGGDTLRLPTSRQREAGWNTLKSRGH 1530074

Query: 61      GTGAF 65
                  A+
Sbjct: 1530073 SASAY 1530059


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 1      MSGEPA---PVSVVPPPGEVEAGSGVHIVVEYCKPXGFEATYLELASAVKEEYPGIEIES 57
              ++ EPA   P++ + PP     G+ +   VEYC     +   L     +K   P  ++ S
Sbjct: 945985 LTPEPASTPPINDISPPLSSPGGTDMDDDVEYCSTECTQRASLYRPLELKHRAPLAQVRS 945806

Query: 58     RLGGTGAFEIEI 69
               +   GA  +++
Sbjct: 945805 LILSKGAVTLDV 945770



 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 1       MSGEPAPVSVVPP 13
               +SG+PAP+ VVPP
Sbjct: 1033872 ISGQPAPLGVVPP 1033834


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 6      APVSVVPPPGEVEAGSGV 23
              AP SV PPPG +  G+GV
Sbjct: 370478 APGSVTPPPGLLCGGTGV 370531


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000079_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Mus
musculus # Complete
         (616 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   231   2e-60
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   156   4e-38
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    74   4e-13
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    60   5e-09
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    35   0.20 
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    35   0.24 
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    33   0.45 
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    33   0.67 
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    33   0.68 
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    33   0.77 
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    33   0.80 
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    32   1.0  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    32   1.1  
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    32   1.2  
LmjF12_01_20050601_V5.2 [~/leish/curated/chr12/LmjF12_01_2005060...    31   2.4  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    31   2.6  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    31   2.7  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    31   2.8  
LmjF01_01_20050601_V5.2 [~/leish/curated/chr1/LmjF01_01_20050601...    31   2.9  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    30   4.0  
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    30   4.6  
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    30   4.6  
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    30   4.8  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    30   6.1  
LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    30   7.1  
LmjF08_01_20050601_V5.2 [~/leish/curated/chr8/LmjF08_01_20050601...    29   8.5  
LmjF10_01_20050601_V5.2 [~/leish/curated/chr10/LmjF10_01_2005060...    29   9.0  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  231 bits (588), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 154/481 (32%), Positives = 246/481 (51%), Gaps = 10/481 (2%)
 Frame = +1

Query: 124    SYDFDLIIIGGGSGGLAAAKARLSAAKFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIP 183
              S  +DL+++G GSGGL A     +AA + KKV V+D            LGGTCVNVGC+P
Sbjct: 105670 SRAYDLVVLGAGSGGLEAGWN--AAATYKKKVAVVDVQATHGPPFFAALGGTCVNVGCVP 105843

Query: 184    KKLMHQAALLGQALKDSRNYGWKV-EDTVKHDWEKMTESVQSHIGSLNWGYRVALREKK- 241
              KKLM   A     +++S  +GW++  +++  +W+ +  +    +  +N  Y+    + + 
Sbjct: 105844 KKLMVTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAAKNKVVNGINESYKSMFADTEG 106023

Query: 242    VVYENAYGRFIGPHRIVATN----NKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISS 297
              + +   +G     H ++       N    +    E  LIATG  P  LG+PGD E+CI+S
Sbjct: 106024 LSFHMGFGALQDAHTVLVRKSEDPNSDVLETLDTEYILIATGSWPTRLGVPGD-EFCITS 106200

Query: 298    DDLFSLPYCPGKTLVVGASYVALECAGFLAGI---GLDVTVMVR-SILLRGFDQDMANKI 353
              ++ F L   P + L VG  Y+A+E AG   G    G  V +  R  ++LRGFD ++   +
Sbjct: 106201 NEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGYVDLCYRGDLILRGFDTEVRKSL 106380

Query: 354    GEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSC 413
               + +  +GI+      PTKI + E G+           +  +  E +++ V+LA+GR   
Sbjct: 106381 TKQLGANGIRVRTNLNPTKITKNEDGS--------NHVHFNDGTEEDYDQVMLAIGRVPR 106536

Query: 414    TRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQR 473
              ++T+ L+  GV+   K G + V    +T+V  IYAIGD+   ++ LTPVAI  G   A+ 
Sbjct: 106537 SQTLQLDKAGVQ-TAKNGAVQVDAYSKTSVDNIYAIGDV-TNRVMLTPVAINEGAAFAET 106710

Query: 474    LYGGSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSR 533
              ++GG     D+  V   VF+    G CG++EE+A +    E + VY S F PL   +   
Sbjct: 106711 VFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKN--HETVAVYESCFTPLMHNISGS 106884

Query: 534    DNNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCA 593
               + +   +II +    E V+G H+LG +A E+ Q     +K G       +TIG+HP  A
Sbjct: 106885 KHKEFMIRIITDQPSGE-VLGVHMLGDSAPEIIQSVGICMKMGAKISDFHNTIGVHPTSA 107061

Query: 594    E 594
              E
Sbjct: 107062 E 107064


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  156 bits (395), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 154/578 (26%), Positives = 252/578 (43%), Gaps = 8/578 (1%)
 Frame = +1

Query: 25      APTCPNCCWFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCIC 84
               AP  P  C F   +   P  P + + LL GP    L  +      PSSS  P        
Sbjct: 1324201 APPFPPLCSFYYLVATPPLSPSLTQHLLSGPLALFLSRA------PSSSSLPLFVTTLSG 1324362

Query: 85      PPPSTPDSRQEKNTQSELPNKKGQLQKLPTMNGSKDPPGSYDFDLIIIGGGSGGLAAAKA 144
               P  +T       +TQ+     +  +  L +            +D+ +IGGG GG  AA  
Sbjct: 1324363 PRSNTHTFPHFTHTQAHTSMFRRNIAHLAS------------YDVTVIGGGPGGYVAA-- 1324500

Query: 145     RLSAAKFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALKDSRNY 203
                + AA+   K   ++         R  LGGTC+NVGCIP K L+H   L   A  +   Y
Sbjct: 1324501 -IKAAQLGLKTACIE--------KRGALGGTCLNVGCIPSKALLHATHLYHDAHANFAQY 1324653

Query: 204     GWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNK 263
               G +  + V  D   M       + +L  G     ++ KV Y    G F+ P+ I      
Sbjct: 1324654 GLRGGENVTMDVSAMQAQKGKGVKALTGGVEYLFKKNKVTYYKGEGSFVNPNTIKVKGLD 1324833

Query: 264     GKEKIYSAERFLIATGERPRYLG-IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALEC 322
               GKE+   +++ ++ATG  P  L  +P D++  +SS     L + P K +VVG   + LE 
Sbjct: 1324834 GKEETLESKKTIVATGSEPTELPFLPFDEKVVMSSTGALDLDHVPKKMIVVGGGVIGLEL 1325013

Query: 323     AGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTP 381
                   A +G +VTV+   S      D D++  + + + +H  + ++    TK   + +GT 
Sbjct: 1325014 GSVWARLGAEVTVVEFASRCAATTDADVSKALTDALVKH--EKMKIMTNTK---VVSGTN 1325178

Query: 382     GRLRVTAQSTNSE---ETIEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDE 438
                   VT +  + +   +T+E +   +L +VGR     T GL    + +  + G I + D 
Sbjct: 1325179 NGSSVTIEVEDKDGKHQTLEAD--ALLCSVGRRP--HTTGLNAEAINLQMERGFICINDH 1325346

Query: 439     EQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSNVKCDYDNVPTTVFTPLEYG 498
                +TNVP +YAIGD++     L   A + G   A+ L G      +Y  +P  ++T  E  
Sbjct: 1325347 FETNVPNVYAIGDVVNKGPMLAHKAEEEGVACAEILAGKPG-HVNYSVIPGVIYTNPEVA 1325523

Query: 499     CCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSR--DNNKCYAKIICNLKDDERVVGFH 556
                 G +EE+ V+K G +    Y    +P      ++       + K++ + K D R++G  
Sbjct: 1325524 QVGETEEQ-VKKRGID----YKVGKFPFSANSRAKAVGTEDGFVKVVTDKKTD-RILGVQ 1325685

Query: 557     VLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAE 594
               ++   AGE+      A++ G + + L  T   HP  +E
Sbjct: 1325686 IVCTAAGEMIAEPTLAMEYGASSEDLGRTCHAHPTMSE 1325799



 Score = 32.3 bits (72), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
 Frame = +1

Query: 37     FLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPSTPDSRQ-- 94
               LP +PRP H    LL  P  A LP S  +   P      CP  P     PS P  ++  
Sbjct: 594661 LLPRIPRPRHAINTLLTFPPCASLPLSHSTALPPI-----CPRLPQAPSSPSRPAKQRCK 594825

Query: 95     ---------EKNTQSELPNK-KGQLQKLPTMNGSKDPP 122
                        +NT S   +  +G L++ P       PP
Sbjct: 594826 SLTATHQLCHRNTASASNHTPRGPLRRAPHSRARHAPP 594939



 Score = 30.8 bits (68), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 23     WVAPTCPNCC---WFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRP 65
              W AP+CP C    W     P   RPP VP V+   PR A  P   P
Sbjct: 738707 WFAPSCPACVQRRW-----PTAARPPSVP-VVEGAPRAAASPTRAP 738826



 Score = 30.4 bits (67), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 20/111 (18%)
 Frame = -1

Query: 12    ASRGRT---------FVQTVW---VAPTCPNCCWFPGFLPPVPRPPHVPRVLLRGPRGAV 59
             A+RGRT         F+   W   V P     C      P VP+PPH         RG +
Sbjct: 62386 AARGRTDMDVVFGAWFLSAPWTGVVRPIRKTACRCRHLAPLVPKPPH----FAFSGRGKI 62219

Query: 60    --------LPASRPSKTLPSSSQTPCPTDPCICPPPSTPDSRQEKNTQSEL 102
                     L A+R S     + + P      +CPPPS   SR   +  S L
Sbjct: 62218 VVSSSVRDLRAARLSLFPRCALKPPSLLSHSLCPPPSFGPSRPAAHRVSAL 62066



 Score = 30.4 bits (67), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 14     RGRTFVQTVWVAPTCPNCCWFPGFLPPVPRPPHVPRVL 51
              RGR   Q V    + P+C W PG  P  P     P V+
Sbjct: 229067 RGRHTAQCVVFQGSAPHCVWGPGRAPTTPANAQAPLVV 229180



 Score = 30.0 bits (66), Expect = 5.7,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
 Frame = +1

Query: 32      CWFPGFLPPVPRPPHVPRVLLRG---PRGAVLPASRP------SKTLPSSSQTPCPTDPC 82
               CW P F     R P  PR   RG    R A LP +         K+  S   TP PT P 
Sbjct: 1288963 CWIPLFP*VCCRLPR-PRPSCRGWPPSRQAPLPRAIKRGKDAWDKSYASPENTPLPTSPS 1289139

Query: 83      ICPPPSTPDSR 93
                  PP  P  +
Sbjct: 1289140 AVTPPPMPSKQ 1289172



 Score = 29.6 bits (65), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 14     RGRTFVQTVWVAPTCPNCCWFPGFLPPVPRPPHVPRVL 51
              RGR   Q V    + P+C W PG  P  P     P V+
Sbjct: 249684 RGRHTAQCVVFQGSAPHCVWGPGRAPTTPANAQAPLVV 249797



 Score = 29.6 bits (65), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 6      CWLYFPASRG-RTFVQTVWVAPTCPNC-CWFPGFLPP 40
              CW  +P SRG R F +  W A    NC C +    PP
Sbjct: 975695 CWTAYPCSRGCRVFSERCWRARRASNCGCAWSSACPP 975585



 Score = 29.3 bits (64), Expect = 8.9,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -2

Query: 65      PSKTLPSSSQTPCPTDPCICPPPSTPDSRQEKNTQSELPNKKGQLQKLPTMNGSKDP 121
               P +TL  S QTPCP  P        P         S     +  LQ+LP  N  +DP
Sbjct: 1553934 PWRTLAVSLQTPCPDPPRCARHAELPHPPHPLLPTSSRSRHRDNLQRLP--NPLRDP 1553770


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 146/578 (25%), Positives = 230/578 (39%), Gaps = 36/578 (6%)
 Frame = -3

Query: 26      PTCPNCCWFPGFLPP---VPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPC 82
               P  PN    P  L     +P P   PR    G R +   +      LPSSS   CP    
Sbjct: 1279635 PLSPNTQLVPPLLSDPLCLPSPSDSPR--WGGSRASQFASDPYCYELPSSS---CPPRCA 1279471

Query: 83      ICPP-PSTPDSRQEK-----NTQSELPNKKGQLQKLPTMNGSKDPPGSYDFDLIIIGGGS 136
               + P  P +P S   K     + Q  +P         P +  +   P     DL +I    
Sbjct: 1279470 VAPSLPFSPVSAAVKMLFRSSVQCNVP--------FPVLRSAGAFP---RVDLCVI---G 1279333

Query: 137     GGLAAAKARLSAAKFDKKVLVLDFVTPTPLGTRWG---LGGTCVNVGCIPKKLMHQAALL 193
               GG     A + A  + K V +++       G R G   LGGT      +P K+M++ A  
Sbjct: 1279332 GGPGGIAAAMRAIGYGKSVCIVE-------GGRVGGADLGGT------VPSKMMYEIAHF 1279192

Query: 194     GQALKDSRNYGWKVEDTVKHD----------WEKMTESVQSHIGSLNWGYRVALREKKVV 243
                 +L         V D VK D           E++T+ ++         YR  L    V 
Sbjct: 1279191 AASLTGPEF----VRDLVKPDEMQSIVDGIPSERITQLLRKTCTGKEREYRAFLEASGVQ 1279024

Query: 244     YENAYGRFIGPHRI-VATNNKGKEKIYSAERFLIATGERPRYLGIPG-DKEYCISSDDLF 301
                      F  P+ I V T   G+ +   A+  +IATG  PR       D    ++S  LF
Sbjct: 1279023 LIEGKATFANPNEIDVHTEGTGEYRSLQADNVVIATGAIPRSHAFAKCDHNRILNSTSLF 1278844

Query: 302     SLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI--LLRGFDQDMANKIGEHMEE 359
                +P  P   +V+GA  +  E A   A +G     +V     +L   D+D+A+ +  H+  
Sbjct: 1278843 EMP-IPASMVVIGAGAMGCEVASMFAKLGRTKVRLVDKAPRILPKEDEDVASYVQRHLIR 1278667

Query: 360     HGIKFIRQFVPTKIEQIEAGTPG-RLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIG 418
                G+  I Q    ++  +EAG    R  +    +   ET   E    ++AVGR      +G
Sbjct: 1278666 RGV-VIHQ--GCRLFDLEAGEEDCRYSLRDIFSGDIETYHAE--RAMVAVGRQPNLGALG 1278502

Query: 419     LETVGVKINEKTGKIPVTDEEQTNVPY--IYAIGDILEGKLELTPVAIQAGRLLAQRLYG 476
               LE   +++  + G++   DE     PY  IY IGD   G+ +    A  AG+ +   ++G
Sbjct: 1278501 LENTKMRV--ENGQLDC-DEYGRCKPYKHIYCIGDA-TGRQKTVNTAQTAGQAVVDTMFG 1278334

Query: 477     GSNVKCDYDNVPTTVFTPL----EYGCCGLSEEKAVEK---FGEENIEVYHSFFWPLEWT 529
                S      +N  T + T +    E    GLSE++       +    +E Y     P+   
Sbjct: 1278333 CSPKLAVSNNALTNIATDMFLEDEVASIGLSEKQCRASGIGYIVARLE-YKHLTRPI--V 1278163

Query: 530     VPSRDNNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQ 567
               + ++D    + K+I     ++RV+G   +GP+AG V +
Sbjct: 1278162 MGAKDG---FVKMIVTNDREKRVLGVRAVGPHAGSVVE 1278058



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 100/421 (23%), Positives = 178/421 (42%), Gaps = 30/421 (7%)
 Frame = -2

Query: 172     LGGTCVNVGCIPKKLMHQ-AALLGQALKDS--RNYGWKVEDTVKHDWEKMTESVQSHIGS 228
               LGG  +  G +  K M + +A++ +   D+  R YG  ++  ++ D  KM +S++     
Sbjct: 1282759 LGGNDLWDGALQSKTMWECSAIMAKMRGDAAMRLYGESLDRYLEIDEVKMRQSMEQVSRI 1282580

Query: 229     LNWGYRVALREKKVVYENAYGR--FIGPHRIVATNNKGKE-KIYSAERFLIATGERPR-Y 284
                    + AL+    V E   GR  F   H I   + + KE +  +A+ F++ATG +PR +
Sbjct: 1282579 REEQIQAALKASPNV-ELVLGRATFSSNHEIQCHSKRTKEFRSITADYFIVATGSKPRKH 1282403

Query: 285     LGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIG-LDVTVMVRS--IL 341
                 +  D    ++SD +   P  P   ++VGA  +  E A  +  +G   V+++ ++  IL
Sbjct: 1282402 PYVAADGRLVMTSDHIMRAPL-PKSLVIVGAGVIGCEFASIIGRLGKTKVSIIDKAPHIL 1282226

Query: 342     LRGFDQDMANKIGEHMEEHGIK-------FIRQFVPTKIEQIEAGTPGR------LRVTA 388
                R  D D+   I   M+  GI        +  Q     +E+ +A  P        ++ T 
Sbjct: 1282225 PRE-DPDIVRMIESGMDRAGIVVHHNSDLYDMQPWEETVEEAKARHPADPAPQSGVQYTV 1282049

Query: 389     QSTNSEETIEGEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIPVTDEEQ-TNVPYIY 447
                   + +    +    L+++GR      +G+E   +K   +  ++ V +  Q    P+I+
Sbjct: 1282048 MDRTTRKLTTFQVERALISIGRVPDYSRLGIENTTLKT--RGSQLHVNEFGQCVGTPHIF 1281875

Query: 448     AIGDILEGKLELTPVAIQAGRLLAQRLYGGSN--VKCDYDNVPTTVFTPLEYGCCGLSEE 505
               A+GD     ++L  +     +L    +YG     V    + + +  F        G +E 
Sbjct: 1281874 AVGDAAT-HMQLVSMGEAQAKLAVDYIYGTEPKVVPNLTETMSSVAFLTRAVASVGYNES 1281698

Query: 506     KAVEKFGEENIEVYHSFFWPLEWTVPSRD----NNKCYAKIICNLKDDERVVGFHVLGPN 561
               +  EK G   I   +S+       V SR     N K + KIIC   D ER     +LG  
Sbjct: 1281697 QCREK-GIAYIAARYSY------EVVSRAVAAANTKGFVKIIC-ADDPER----RILGVR 1281554

Query: 562     A 562
               A
Sbjct: 1281553 A 1281551



 Score = 31.6 bits (70), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
 Frame = +2

Query: 35     PGFLPPVPRPPHVPRVLLRG---------------PRGAVLPASRPSKTLPSSSQTPCPT 79
              PG  PPV + PH  +   RG                R +VL    PS   PS++  P   
Sbjct: 813530 PGACPPVAQAPH--QWAARGG*GTLASH*HPAHHTSRTSVLAVEDPSHATPSAASPPASV 813703

Query: 80     DPCICPPP 87
              + C+ P P
Sbjct: 813704 EACVAPTP 813727



 Score = 31.6 bits (70), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
 Frame = +3

Query: 35     PGFLPPVPRPPHVPRVLLRG---------------PRGAVLPASRPSKTLPSSSQTPCPT 79
              PG  PPV + PH  +   RG                R +VL    PS   PS++  P   
Sbjct: 832206 PGACPPVAQAPH--QWAARGG*GTLTSH*HPAHHTSRTSVLAVEDPSHATPSAASPPASV 832379

Query: 80     DPCICPPP 87
              + C+ P P
Sbjct: 832380 EACVAPTP 832403



 Score = 30.0 bits (66), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = -2

Query: 12     ASRGRTFVQTVWVAPTCPNCCWFPGFLPPVPRPPHVPRVLLRG---PRGAVLPASRPSKT 68
              A+R R F + +    + P  C  PG  P +  P    R+L +G   PRG +    R  K 
Sbjct: 604918 ATRKR*FERCLPWKRSAPPAC--PGIFPTLSSP-QTDRLL*QGRLPPRGRLRHWIRSGKL 604748

Query: 69     LPSSSQTPCPTDPCICPPPST 89
                S S T CP+ P    PPST
Sbjct: 604747 ASSLSWTFCPSTPRY--PPST 604691


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 100/482 (20%), Positives = 195/482 (40%), Gaps = 12/482 (2%)
 Frame = -2

Query: 127    FDLIIIGGGSGGLAAAKARLSAAKFDKKVLVLDFVTPTPLGTRWGLGGTCVNVGCIPKKL 186
              FD+ ++    GG A   A + A +  KK  +++            +GG     G +  K 
Sbjct: 818560 FDVCVL---GGGPAGIAAAVRAYELGKKACIIE---------ESRIGGADFWNGALQSKT 818417

Query: 187    MHQAALLGQAL--KDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVY 244
              + + A   +      S  +   V +  K     + +++ +   +        L    +  
Sbjct: 818416 LWEMAKFARYTMGNTSHRFMKSVIELPKIKHSNLIKAITNAAETRETQTLEVLANAHIEV 818237

Query: 245    ENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYCISSDDLFSL 303
               +  G F  P+ +  T   G E+   A+ F+IATG  PR +     D +   +SDD+   
Sbjct: 818236 LSGLGSFKTPNSVAVTKKDGTEETVEADYFVIATGAHPRPHPTAVADGKVVFTSDDIMMQ 818057

Query: 304    PYCPGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS-ILLRGFDQDMANKIGEHMEEHG 361
              P  P   +++GA  +  E A   A  G+  V ++ +S  +L   D+D+A  +   +E+ G
Sbjct: 818056 PL-PKSIVIIGAGVIGCEFASIFANFGVTQVNIIEKSGRILPMEDEDIALFVQTLLEQKG 817880

Query: 362    IKFIRQFVPTKIEQIEAGTPGRLRVTAQSTNSEETIEGEFNTVLLAVGRDSCTRTIGLET 421
              + F      + +E   +   G+   T +        +   ++ L+++GR      + LE 
Sbjct: 817879 VCFHHH---SAMES-SSINDGKFHYTLRDVRDNSLHQHVTDSALVSIGRVPAISKLNLEA 817712

Query: 422    VGVKINEKTGKIPVTDEEQTNVP--YIYAIGDILEGKLELTPVAIQAGRLLAQRLYG--- 476
              +G+ +  K  +I   DE     P  +IYA GD    ++ L  VA   GR     +Y    
Sbjct: 817711 IGITV--KGNRID-RDEFLRIEPHKHIYACGDTCT-RVALVNVAELEGRACIDHMYTPYP 817544

Query: 477    GSNVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWT--VPSRD 534
                 +K   DN+ T +F   E    GL+E++      ++    Y    +  E+     +  
Sbjct: 817543 EEQLKLKLDNLSTIMFLDQEVAAVGLNEQQC-----QKMSISYKMARYSYEYVGRALAMG 817379

Query: 535    NNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAE 594
              N + + K++       +V+G   +GP+A  + +  + A+    +   L +   ++P   +
Sbjct: 817378 NTRGFIKLVVTNDKKMQVLGVRAVGPHASSIIELASLAIHNRDSAYDLRNLHAVYPAITQ 817199

Query: 595    IF 596
               F
Sbjct: 817198 GF 817193



 Score = 29.6 bits (65), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 55     PRGAVLPASRPSKTLPSSSQTPCPTDPC 82
              PR   + A RPS+   S+ +T CP  PC
Sbjct: 487069 PRAGHMAAPRPSRLARSAGRTRCPGSPC 486986


>LmjF21_01_20050601_V5.2
             [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 35.0 bits (79), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
 Frame = +2

Query: 21    TVWVAPTCPNCCWFPGF-------------LPPVPRPPHVPRVLLRGPRGAVLPASRPSK 67
             T W + T P+  W+P               L P P     PR+  R P    LPA+ PS+
Sbjct: 85865 TSWRSATTPSARWWPATSWTRTCRWASSSALAPTPATLSAPRLSRRTP--PCLPAATPSR 86038

Query: 68    TLPSSSQTPCPTDPCICPPPST 89
                 S+ T  P+    CP P T
Sbjct: 86039 RSTWSAVTSTPSTSTRCPSPCT 86104



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
 Frame = +2

Query: 21    TVWVAPTCPNCCWFPGF-------------LPPVPRPPHVPRVLLRGPRGAVLPASRPSK 67
             T W + T P+  W+P               L P P     PR+  R P    LPA+ PS+
Sbjct: 81866 TSWRSATTPSARWWPATSWTRTCRWASSSALAPTPATLSAPRLSRRTPPS--LPAATPSR 82039

Query: 68    TLPSSSQTPCPTDPCICPPPST 89
                 S+ T  P+    CP P T
Sbjct: 82040 RSTWSAVTSTPSTSTRCPSPCT 82105



 Score = 33.1 bits (74), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +2

Query: 10     FPASRGRTFVQTVWVAPTCPNCCWF---PGF 37
               P  RG+ F Q V   P C  CCW+   P F
Sbjct: 727112 LPVERGKRFTQRVVQIPECFACCWYKREPAF 727204


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = -1

Query: 31     CCWFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPSTP 90
              C   P    P P  P + R      R A +P++  SKT PS+S++ CP  P  C P    
Sbjct: 243530 CTAAPHRTSPPPPTPDLARSWTAS*RAAQIPSAPSSKT-PSASRSSCPRRPLRCAP*GRG 243354

Query: 91     DSRQEKNTQSELPNKKGQLQKLPTMNG----SKDPPGS 124
               SR+  +     P++  +  +  T  G    SK  PG+
Sbjct: 243353 GSRRLGSRYGARPSR*ARGARKSTCTGQDRTSKRCPGA 243240



 Score = 30.4 bits (67), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 19     VQTVWVAPTCPNCCWFPGFL 38
              V   W+AP  P+CCWF  F 
Sbjct: 985670 VAGCWLAPCAPHCCWFGLFF 985729



 Score = 29.6 bits (65), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 32/91 (35%)
 Frame = +3

Query: 12     ASRGRTFVQTVWVAPTCPNCCWFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPS 71
              ASR R  V   W A      C F       P+ P +PR          LP + P+    S
Sbjct: 271557 ASRCRCTVGWCWSATARRPLCTF------TPKQPQLPR----------LPQTTPTADTHS 271688

Query: 72     SSQTPCPTDPCICPPPSTPDSRQEKNTQSEL 102
                 +PC T      PP  P S     T + L
Sbjct: 271689 KRPSPCATH-----PPHRPHSAAAPRTPASL 271766


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 33.5 bits (75), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = -1

Query: 11      PASRGRTFVQTVW-VAPTCPNCCWFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTL 69
               PASR    V  +W +   C  CC   G  PP   PP        GP     PA + S   
Sbjct: 1038865 PASRSTLSVGGIWSLESCCLRCC---GCDPPACTPPAQMGRSRTGP-----PAVQHSPFR 1038710

Query: 70      PSSSQTPCPTDPCICPPPSTP 90
                 +S  PC +  C  PP  +P
Sbjct: 1038709 ERTSGLPCSSGACCAPPSGSP 1038647



 Score = 30.8 bits (68), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 23      WVAPTCPNCCW 33
               W+ P CP CCW
Sbjct: 1539502 WIEPCCPQCCW 1539534


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 33.1 bits (74), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +3

Query: 40     PVPRPPHVPRVLLRGPRGAVLPA---SRPSKTLPSSSQTPCPTDPCICPPPSTPDSRQEK 96
              P P PP + R + R PR  + P    SRPS    +  +        +CPPP+        
Sbjct: 313809 PAP-PPSLHRHVGRQPRIQISPLPCLSRPSHPFLARHREVARASSPLCPPPNLSPPCFCA 313985

Query: 97     NTQSELPNKKGQLQKLPTMNGSK 119
              + Q E   ++GQ Q+     GS+
Sbjct: 313986 HIQEESGERRGQTQREEICGGSQ 314054



 Score = 29.6 bits (65), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -2

Query: 27      TCPNCCWFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDP 81
               +C   C+   FLPP+P  P    +     R +  P S     +P SS+T   T P
Sbjct: 1142498 SCGRICYAASFLPPLPHTPFSSSI-----RWSFNPTS*RDGGIPPSSRTAAHTCP 1142349



 Score = 29.3 bits (64), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 28      CPNCCWFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRP-SKTLPSSSQTPCP-TDPCICP 85
               CP+CC +P   P V R P  P+   R     + P  R  S    + S+  CP    C C 
Sbjct: 1046803 CPHCCRYPTHTPAVWRDPLRPQPSPRRRET*MDPPPRSRSPARHTGSRPACPRCRECSCS 1046982

Query: 86      PPSTP 90
                 STP
Sbjct: 1046983 RQSTP 1046997


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 33.1 bits (74), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 21     TVWVAPTCPNCCWFPGFLPPVPR-----PPHVPRVLLRGPRGAVLPASRPSKTLPSSSQT 75
              ++W   +C  C  F    PP+PR     PP   +   R PR   L A+   +  P+S+Q+
Sbjct: 567835 SLWCPLSC-GCSRFCRHTPPLPRFRSWIPPRRRQSRFRPPRSTWLAAAASKQVSPASAQS 568011

Query: 76     P 76
              P
Sbjct: 568012 P 568014


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 32.7 bits (73), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 57     GAVLPAS--RPSKTLPSSSQTPCPTDPCICPPPSTPDSRQEKNTQSELP 103
              G + PA+  R   T  SSS  P P+ P + PPPS     Q+K   S+ P
Sbjct: 609027 GVLDPATFFRVDATTRSSSIQPSPSHPKLLPPPSQEGDEQQKQQPSKPP 608881


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 32.7 bits (73), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -1

Query: 33     WFPGFLPPVPRP---PHVPRVLLRGPR 56
              W  GFL PVP+P   P VPR LL+  R
Sbjct: 181544 WMQGFLLPVPQPIEHPPVPRALLQSSR 181464


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 32.3 bits (72), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
 Frame = -2

Query: 47      VPRVLLRGPRGAVLPASR-------PSKTLPSSSQTPCPTDPCICPPPSTPDSRQEKNTQ 99
               VPR LLR  RGA  P  R       P ++    ++  CP +  + P      SR  K +Q
Sbjct: 1278647 VPRPLLRRGRGAAAPHPRNLQTPTSPRRSDRREARHRCPQEGLVLPAQGPAPSRATKGSQ 1278468

Query: 100     SELP 103
               +  P
Sbjct: 1278467 TASP 1278456



 Score = 31.6 bits (70), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 45     PHVPRVLLRGPRGAVLPASRPSKTLP-SSSQTPC 77
              PHV  + +   RGAV+PA  P  +LP   ++TPC
Sbjct: 178888 PHVCMLAVTASRGAVVPAHAPLASLPLVDNETPC 178787



 Score = 31.6 bits (70), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 34     FPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPP--PSTPD 91
               P  L P P P  VP      P  A  PA  P +T    +Q+P    P I PP   S P 
Sbjct: 198802 LPKSLGPCPLPALVP------PSRA--PAEHPPRTPEQRAQSPLLPRPSIAPPHRRSVPK 198957

Query: 92     SRQEKNTQ 99
              SR+++  Q
Sbjct: 198958 SRRQRPPQ 198981



 Score = 30.4 bits (67), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = -3

Query: 52     LRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPSTPDSRQEKNTQSELPNKKGQLQK 111
              + GP GA   AS   +   S S   C T   +C   +TP   + + + +    K+     
Sbjct: 730414 VEGPSGATTCASEMPRRAASDSALSCCTAASVCSNVATPVQERRRGSSARHHRKRSSTHV 730235

Query: 112    LPTMNGSKD 120
              +P    ++D
Sbjct: 730234 VPASGSAED 730208



 Score = 30.0 bits (66), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +2

Query: 29     PNCCWFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPS 88
              P  C   G   PV +P  +P+ +   PR     A   +    S    PC    C C PP 
Sbjct: 245300 PTHCCPCGTRCPVWQPHDLPQ*IAGAPRRGCSGARHRASRSSSLRHFPCLAQ-CSCRPPW 245476

Query: 89     TPDSRQ 94
              TP+SR+
Sbjct: 245477 TPESRR 245494



 Score = 30.0 bits (66), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 39      PPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPC 82
               PP+ +P H  R   R P+  + P+   S+  P SS  PC   PC
Sbjct: 1447318 PPLVQPVHPQR*RCRRPQKGLYPSL--SRLSPHSSTQPCRGSPC 1447193


>LmjF26_01_20050601_V5.2
             [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 32.3 bits (72), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
 Frame = -3

Query: 37    FLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSS------QTPCPTDPCICPPPSTP 90
             FLP  P P      L    R A +  +      PSSS       TP   DP +  PP  P
Sbjct: 12291 FLPAAPLPAPRQATLTTASRAASIAVALSEPQPPSSSVTNGRAGTPTVNDPALEEPPKLP 12112

Query: 91    DSRQE 95
               R +
Sbjct: 12111 KKRTK 12097



 Score = 31.6 bits (70), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 14/50 (28%)
 Frame = +2

Query: 62     ASRPSKTLPSSSQTPC-PTD-------------PCICPPPSTPDSRQEKN 97
              A RPS TLPSS+QT C PT+             P   PPP++     E++
Sbjct: 711476 APRPSPTLPSSAQTRCQPTENEEEHGVAAAQSRPLPAPPPASVADSSERH 711625



 Score = 30.4 bits (67), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
 Frame = +3

Query: 41     VPRPPHVPRVLLRGPRGAVL-------PASRPSKTLPSSSQTPCPTDPCICPPPSTPDSR 93
              +PRPPH+       P  A L       P SRP +T  SS+        C  P  +   SR
Sbjct: 254979 LPRPPHLRHRCRHQPPSAALAA*VLSFPHSRPLRTRSSSASPRKCARSCTAPGTAKAASR 255158

Query: 94     Q 94
              Q
Sbjct: 255159 Q 255161


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 32.3 bits (72), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
 Frame = +1

Query: 39     PPVPRPPHVPRVLLRGPR-GAVLPAS--RPSKTLPSSSQTPCPTDPCICPPPSTPDSRQE 95
              PP PRPP    VLL G R   V PAS  R       S+ T  P      PP +    +Q 
Sbjct: 327988 PPAPRPPVTTTVLLEGHRPKKVTPASSRRSPDIHFRSAATVSPRAALDTPPAAASLPKQP 328167

Query: 96     KNTQSELPNKKGQLQKLPTMNGSKDPPGSYD 126
              +++       + Q  + P   G   P    D
Sbjct: 328168 QSS------TRAQRHRRPNDLGEVTPEADVD 328242


>LmjF12_01_20050601_V5.2
             [~/leish/curated/chr12/LmjF12_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 675347

 Score = 31.2 bits (69), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 43    RPPHVPRVLLRGPRGAVLPASRPSKTLPSSS 73
             RPP   R++   PRG +LPAS+PS  + S+S
Sbjct: 66249 RPPIHTRLIHASPRGFLLPASKPSFAVLSTS 66341



 Score = 29.6 bits (65), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 39     PPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCI 83
              PP PR   V        R + L  +RPS  LPSSS  P P  P +
Sbjct: 382171 PPTPRRWSV--------RSSALRMARPSLPLPSSSCAPLPPSPSL 382281



 Score = 29.6 bits (65), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +2

Query: 39     PPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCI 83
              PP PR   V        R + L  +RPS  LPSSS  P P  P +
Sbjct: 414224 PPTPRRWSV--------RSSALRMARPSLPLPSSSCAPLPPSPSL 414334



 Score = 29.6 bits (65), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 39     PPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCI 83
              PP PR   V        R + L  +RPS  LPSSS  P P  P +
Sbjct: 471135 PPTPRRWSV--------RSSALRMARPSLPLPSSSCAPLPPSPSL 471245



 Score = 29.6 bits (65), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 39     PPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCI 83
              PP PR   V        R + L  +RPS  LPSSS  P P  P +
Sbjct: 521986 PPTPRRWSV--------RSSALRMARPSLPLPSSSCAPLPPSPSL 522096



 Score = 29.6 bits (65), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 39     PPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCI 83
              PP PR   V        R + L  +RPS  LPSSS  P P  P +
Sbjct: 538396 PPTPRRWSV--------RSSALRMARPSLPLPSSSCAPLPPSPSL 538506


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 43     RPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPS 88
              +PP  PR  LRG R + LPA      LP     P P+ P +  P +
Sbjct: 135918 KPPVRPRGPLRGARASALPA---MAMLPHPPALPSPSKPPVAAPST 135790



 Score = 30.8 bits (68), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
 Frame = -1

Query: 61      PASRPSKTLPSSSQTPCPTDPCI-----------CPPPSTPDSRQEKNTQSELPNKKGQL 109
               P+ RPS+T+  +  + C    C            C PP TPD ++ +  + E   ++G  
Sbjct: 1548517 PSERPSRTIRQTHLSTCRNLHCCASVKAGMAVPRCFPPDTPDKKEHEQQKREQAAEEGAN 1548338

Query: 110     QKLPT-MNGSK 119
               + + T   GSK
Sbjct: 1548337 EPIKTSQEGSK 1548305


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 31.2 bits (69), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 24/130 (18%)
 Frame = +2

Query: 2      PVDDCWLYF-----PASRGRTFVQTVWVAPTCPNCCWFPGFLPPVPRPPHVPRVLLRGPR 56
              PV  C   F      A    + + ++WV   C   CW     P    P   P++     R
Sbjct: 254129 PVRVCMCVFFVRLTDAEASLSLLSSIWVFGVCLRACWHISLFPLARFPSLSPQLSPVRVR 254308

Query: 57     GAVLPAS----------RPSKTLP-------SSSQTPCPTDPCICP--PPSTPDSRQEKN 97
               +  PAS          R S +LP        S + PCP    +C     S+ D+ ++ +
Sbjct: 254309 ASFPPASVWLKKEGERVRSSPSLPPPDMGSRGSKKGPCPLVFSLCALFKLSSIDTHRQSS 254488

Query: 98     TQSELPNKKG 107
                     K+G
Sbjct: 254489 LAVTTEEKRG 254518



 Score = 30.4 bits (67), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 72     SSQTPCPTDPCICPPPSTPDSRQEKNTQSELPNKK 106
              S+  PC +  C C PPSTP  R  + T    P K+
Sbjct: 882009 SAPRPCVSPTCSCTPPSTPRMRTARTTMPRHPCKR 882113


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 31.2 bits (69), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 25/89 (28%)
 Frame = -3

Query: 26     PTCPNCCWF-PGF-----LPPVPRP----------PHVPRVLLR-----GPRGAVLPA-- 62
              P  P C  F P F     +P  PR            H+P +L+        RG++L +  
Sbjct: 461756 PVIPPCFLFSPSFSLCVHVPYAPRRVFFHATSHPLTHLPNLLISCYSWLHRRGSLLQSVQ 461577

Query: 63     --SRPSKTLPSSSQTPCPTDPCICPPPST 89
                SRP    PS S + CPT   +CPPP T
Sbjct: 461576 HSSRPLPH-PSLSLSSCPTSCFVCPPPHT 461493


>LmjF01_01_20050601_V5.2
              [~/leish/curated/chr1/LmjF01_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 268984

 Score = 31.2 bits (69), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = +3

Query: 12     ASRGRTFVQT------VWVAPTCPNCCWFPGFLPPVPRPPHVPRV--LLRGPRGAVLPAS 63
              ++R RT V        ++V      C W  G+     RPP  PR+  L  GPR  V P+S
Sbjct: 236964 STRARTVVSCLRLYIYIYVYMCVCMCVWCAGYHQ---RPPSTPRLTELFLGPRS*VYPSS 237134

Query: 64     RPSKTLP 70
                  T+P
Sbjct: 237135 SSLPTIP 237155


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 30.4 bits (67), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +3

Query: 33     WFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPSTPD 91
              W P  +PPV  P    R L    + AV    RPS+  P S+    P  P  C   + P+
Sbjct: 699540 WEPVTVPPVKLPQDTRRALRASAQTAV---RRPSEAAPVSAADALPPTPAECASDAAPE 699707



 Score = 29.3 bits (64), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +3

Query: 33     WFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPSTP 90
              W P  +PPV  P    R L    + AV    RPS+  P  +    P  P  C P + P
Sbjct: 700152 WEPVTVPPVKLPHDTRRALRASAQTAV---RRPSEAAPVLAVDALPPTPAECAPDAGP 700316


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 30.4 bits (67), Expect = 4.6,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
 Frame = -1

Query: 25     APTCPNC-CWFPGFLPPVPRPPHVPRVLLRGPRGAVLPASRPSKTLPSS--SQTPC---- 77
              A T   C C  P   P +P+PP +PR   R  R      +  S  +PS+     PC    
Sbjct: 460082 ASTSQRCLCTEPKGPPCIPKPPELPRKPSRAFRDGDASWTCESLLVPSNGMESMPCLPQF 459903

Query: 78     ---------PTDPCICPPPSTPDSRQ 94
                       P  P  CP  + PDS +
Sbjct: 459902 WRLPLYAEEPAAPARCPSTALPDSSE 459825



 Score = 29.6 bits (65), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 59     VLPASRPSKTLPSSSQTPCPTDPCICPPPSTPDSRQEKNTQSELPNKKGQLQKLP 113
              V  AS P    PS+S  P P  PC C PPS   +  E+   +  P+        P
Sbjct: 142092 VWAASVPKALAPSASDPP-PHPPCACRPPSLLAADTERRVGAMPPSSGDTTASTP 142253


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 30.4 bits (67), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 39     PPVPRPPHVPRVLLRGPRGAVLPASRPSKTLP--SSSQTPCPTDPCICPPPSTPD 91
              P VP+ PH         R  VLP  RP   LP  S+SQ P    PC    PS P+
Sbjct: 363607 PKVPQAPH------HTLRRDVLPWQRPKLPLPLTSASQPPASGRPC---QPSIPE 363470



 Score = 30.4 bits (67), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 27    TCPNCCWFPGFLPPVPRPPHVPRVLLRGPRGAV 59
             +CP+CC FP       R    PR +  G R A+
Sbjct: 12436 SCPHCCSFPLLTSRAKRCGQYPRTMKHGQRHAI 12338



 Score = 29.3 bits (64), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = -1

Query: 44     PPHVPRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPSTPDSRQEKNTQSELP 103
              PP   R+  R PR    P  R   T P+ S  P  + PC+    STPD   E +      
Sbjct: 358799 PPGALRLKSRPPRTKP-PCCRIGATHPTVSYCPSSSCPCMRGARSTPD---ENSGAPHAL 358632

Query: 104    NKKGQLQKLPTMNGSK 119
              +  G++Q  P + GSK
Sbjct: 358631 SHAGRVQG-PPLEGSK 358587


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 30.4 bits (67), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 16     RTFVQTVWVAPTCPNCC---WFPGFLPPVPRPP 45
              RT  Q  W    C  CC   W+ G+ PPVP+PP
Sbjct: 709539 RTHRQGRW----CCCCCQRGWWGGWTPPVPQPP 709625


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 30.0 bits (66), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 39     PPVPRPPHVPRVLLRGPR-GAVLPASRPSKTLPSSSQTPCPTDPCICPPPSTPD 91
              PP P   H+P +   GP  G V PASRP+   P    TP      +    S PD
Sbjct: 559403 PPSPPSRHMPGLSSLGPPVGGVAPASRPAGEGPHG--TPSSGSAAVAVNVSAPD 559558


>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 29.6 bits (65), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +3

Query: 55     PRGAVLPASRPSKTLPSSSQ---TPCPTDPCICPPPSTPDSRQEK 96
              P  A    S P   LP  +Q   TPC + P + PP S+P  +  +
Sbjct: 443631 PDSATCAPSLPQALLPHPTQPLPTPCRSPPLVHPPSSSPSGQHTQ 443765


>LmjF08_01_20050601_V5.2
              [~/leish/curated/chr8/LmjF08_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 574972

 Score = 29.3 bits (64), Expect = 8.5,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 38     LPPVPRPPHV---PRVLLRGPRGAVLPASRPSKTLPSSSQTPCPTDPCICPPP 87
              LPP+P  P     P   LRG RG +  A+ P    PSS   PC   P +  PP
Sbjct: 282078 LPPIPVRPQAAPSPSFPLRGRRG-LCEATLP----PSSEMPPCSLPPYLYAPP 282221


>LmjF10_01_20050601_V5.2
              [~/leish/curated/chr10/LmjF10_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 570864

 Score = 29.3 bits (64), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 55     PRGAVLPASRPSKTLPSSSQTPCPTDPCICPPPS 88
              PR    PA+ P+   P ++  P P D  +CPPPS
Sbjct: 508542 PRELHRPATPPA---PYTTSAPPPFDSSVCPPPS 508450



 Score = 29.3 bits (64), Expect = 9.9,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
 Frame = +2

Query: 114   TMNGSKDPPGSYDFDLIIIGGGSGGLAAA-----KARLSAAKFDKKVLVLDF-VTPTPLG 167
             T++ S DPP  ++ +  +IGG   G AAA        LS A++DK VLV    +  +PL 
Sbjct: 24650 TLHISVDPP--FNAEHSMIGGSLWGDAAAAMSVPSMSLSYAQYDKSVLVKAADIFSSPLV 24823

Query: 168   TRW 170
             T W
Sbjct: 24824 TNW 24832


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000080_1.0 # Protein # Thioredoxin reductase 2 (TR2) # Mus
musculus # Complete
         (496 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   205   5e-53
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   123   3e-28
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    58   1e-08
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    58   2e-08
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    37   0.034
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    32   1.2  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    31   2.5  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  205 bits (522), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 157/481 (32%), Positives = 237/481 (49%), Gaps = 42/481 (8%)
 Frame = +1

Query: 41     QSFDLLVIGGGSGGLACA-KEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKL 99
              +++DL+V+G GSGGL      AA   KKVAV D            LGGTCVNVGC+PKKL
Sbjct: 105673 RAYDLVVLGAGSGGLEAGWNAAATYKKKVAVVDVQATHGPPFFAALGGTCVNVGCVPKKL 105852

Query: 100    MHQAALLGGMIRDAHHYGWEV-AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYF 158
              M   A    +IR++  +GWE+  + +  NWKT+  A    V  +N  ++    D +   F
Sbjct: 105853 MVTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAAKNKVVNGINESYKSMFADTEGLSF 106032

Query: 159    NIK-ASFVDEHT--VRGVDKGGKATL--LSAEHIVIATGGRPRYPTQ--VKGALEYGITS 211
              ++   +  D HT  VR  +      L  L  E+I+IATG    +PT+  V G  E+ ITS
Sbjct: 106033 HMGFGALQDAHTVLVRKSEDPNSDVLETLDTEYILIATGS---WPTRLGVPGD-EFCITS 106200

Query: 212    DDIFWLKESPGKTSVPAAEDVALECAGFLTGI----GLDTTVMMRSIPLRGFDQQMSSLV 267
              ++ F+L+++P +        +A+E AG   G     G         + LRGFD ++   +
Sbjct: 106201 NEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGYVDLCYRGDLILRGFDTEVRKSL 106380

Query: 268    TEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT 327
              T+ + ++G +      P+ I K       V + D   G E+   +D V+ AIGRVP ++T
Sbjct: 106381 TKQLGANGIRVRTNLNPTKITKNEDGSNHVHFND---GTEE--DYDQVMLAIGRVPRSQT 106545

Query: 328    LNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG 387
              L L+KAG+ T  KN  + VDA   TSV +IYAIGDV   R  LTP AI  G   A+ +FG
Sbjct: 106546 LQLDKAGVQT-AKNGAVQVDAYSKTSVDNIYAIGDVTN-RVMLTPVAINEGAAFAETVFG 106719

Query: 388    KSSTLMDYSN-----------------------------VYHAYYKPLEFTVADRDASQC 418
                    D++                              VY + + PL   ++     + 
Sbjct: 106720 GKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNHETVAVYESCFTPLMHNISGSKHKEF 106899

Query: 419    YIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVK 478
               I+++   +P   VLG+H LG +A E+ Q   + +K GA  +    T+G+HPT +EE+  
Sbjct: 106900 MIRII-TDQPSGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFHNTIGVHPTSAEELCS 107076

Query: 479    L 479
              +
Sbjct: 107077 M 107079


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  123 bits (309), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 141/508 (27%), Positives = 209/508 (41%), Gaps = 40/508 (7%)
 Frame = +1

Query: 9       VAALRGPSRRFRPRTRALTRGTRGAASAAGGRQ------SFDLLVIGGGSGGLACAKEAA 62
               V  L GP    R  T      T   A  +  R+      S+D+ VIGGG GG   A +AA
Sbjct: 1324345 VTTLSGP----RSNTHTFPHFTHTQAHTSMFRRNIAHLASYDVTVIGGGPGGYVAAIKAA 1324512

Query: 63      QLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAH----HYGW 118
               QLG K A  +      RG    LGGTC+NVGCIP K +  A  L     DAH     YG 
Sbjct: 1324513 QLGLKTACIE-----KRG---ALGGTCLNVGCIPSKALLHATHL---YHDAHANFAQYGL 1324659

Query: 119     EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGK 178
                  + V  +   M       VK+L  G     +  KV Y+  + SFV+ +T++     GK
Sbjct: 1324660 RGGENVTMDVSAMQAQKGKGVKALTGGVEYLFKKNKVTYYKGEGSFVNPNTIKVKGLDGK 1324839

Query: 179     ATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTSVPAAEDVALECAG 238
                  L ++  ++ATG  P     +    +  ++S     L   P K  V     + LE   
Sbjct: 1324840 EETLESKKTIVATGSEPTELPFLPFDEKVVMSSTGALDLDHVPKKMIVVGGGVIGLELGS 1325019

Query: 239     FLTGIGLDTTVM-MRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQV 297
                   +G + TV+   S      D  +S  +T+ +  H  + +K    + +     N   V
Sbjct: 1325020 VWARLGAEVTVVEFASRCAATTDADVSKALTDALVKH--EKMKIMTNTKVVSGTNNGSSV 1325193

Query: 298     TWE-DHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVPH 356
               T E +   GK  T   D +L ++GR P T  LN E   I+   +   I ++    T+VP+
Sbjct: 1325194 TIEVEDKDGKHQTLEADALLCSVGRRPHTTGLNAE--AINLQMERGFICINDHFETNVPN 1325367

Query: 357     IYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVYHAYYKPLEFTVADRDAS 416
               +YAIGDV    P L   A + G   A+ L GK   + +YS +    Y   E         
Sbjct: 1325368 VYAIGDVVNKGPMLAHKAEEEGVACAEILAGKPGHV-NYSVIPGVIYTNPEVAQVGETEE 1325544

Query: 417     QC----------------------------YIKMVCMREPPQLVLGLHFLGPNAGEVTQG 448
               Q                             ++K+V  ++  + +LG+  +   AGE+   
Sbjct: 1325545 QVKKRGIDYKVGKFPFSANSRAKAVGTEDGFVKVVTDKKTDR-ILGVQIVCTAAGEMIAE 1325721

Query: 449     FALGIKCGASYAQVMQTVGIHPTCSEEV 476
                 L ++ GAS   + +T   HPT SE V
Sbjct: 1325722 PTLAMEYGASSEDLGRTCHAHPTMSEAV 1325805


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 113/510 (22%), Positives = 190/510 (37%), Gaps = 41/510 (8%)
 Frame = -2

Query: 6      AAMVAALRGPSRRFRPRTRALTRGTRGAASAAGGRQSFDLLVIGGGSGGLACAKEAAQLG 65
              AA  A  +G +       +AL   T    +     + FD+ V+GGG  G+A A  A +LG
Sbjct: 818671 AASSAPSQGKTSLTEN*KKALRHPTTMKRTIVAWTRKFDVCVLGGGPAGIAAAVRAYELG 818492

Query: 66     KKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLG--GMIRDAHHYGWEVAQP 123
              KK  +   +E S       +GG     G +  K + + A      M   +H +   V + 
Sbjct: 818491 KKACI---IEESR------IGGADFWNGALQSKTLWEMAKFARYTMGNTSHRFMKSVIEL 818339

Query: 124    VQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLS 183
               +     + +A+ N  ++        L +  ++  +   SF   ++V    K G    + 
Sbjct: 818338 PKIKHSNLIKAITNAAETRETQTLEVLANAHIEVLSGLGSFKTPNSVAVTKKDGTEETVE 818159

Query: 184    AEHIVIATGGRPR-YPTQVKGALEYGITSDDIFWLKESPGKTSVPAAEDVALECAGFLTG 242
              A++ VIATG  PR +PT V    +   TSDDI  ++  P    +  A  +  E A     
Sbjct: 818158 ADYFVIATGAHPRPHPTAVADG-KVVFTSDDIM-MQPLPKSIVIIGAGVIGCEFASIFAN 817985

Query: 243    IGLDTTVMM----RSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVT 298
               G+    ++    R +P+   D+ ++  V   +E  G  F           +   +   T
Sbjct: 817984 FGVTQVNIIEKSGRILPME--DEDIALFVQTLLEQKGVCFHHHSAMES-SSINDGKFHYT 817814

Query: 299    WEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSV---P 355
                D           D+ L +IGRVP    LNLE  GI+   K  +I  D  E   +    
Sbjct: 817813 LRDVRDNSLHQHVTDSALVSIGRVPAISKLNLEAIGITV--KGNRI--DRDEFLRIEPHK 817646

Query: 356    HIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG---KSSTLMDYSNVYHAYYKPLEFTVAD 412
              HIYA GD    R  L   A   G+     ++    +    +   N+    +   E     
Sbjct: 817645 HIYACGDTCT-RVALVNVAELEGRACIDHMYTPYPEEQLKLKLDNLSTIMFLDQEVAAVG 817469

Query: 413    RDASQC----------------------------YIKMVCMREPPQLVLGLHFLGPNAGE 444
               +  QC                            +IK+V   +    VLG+  +GP+A  
Sbjct: 817468 LNEQQCQKMSISYKMARYSYEYVGRALAMGNTRGFIKLVVTNDKKMQVLGVRAVGPHASS 817289

Query: 445    VTQGFALGIKCGASYAQVMQTVGIHPTCSE 474
              + +  +L I    S   +     ++P  ++
Sbjct: 817288 IIELASLAIHNRDSAYDLRNLHAVYPAITQ 817199


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 119/518 (22%), Positives = 200/518 (38%), Gaps = 53/518 (10%)
 Frame = -3

Query: 14      GPSRRFRPRTRALTRGTRGAAS---------AAGGRQSFDLLVIGGGSGGLACAKEAAQL 64
                PS  F P + A+    R +           +AG     DL VIGGG GG+A A  A   
Sbjct: 1279467 APSLPFSPVSAAVKMLFRSSVQCNVPFPVLRSAGAFPRVDLCVIGGGPGGIAAAMRAIGY 1279288

Query: 65      GKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEVAQPV 124
               GK V + +      R     LGGT      +P K+M++ A     +     +  ++ +P 
Sbjct: 1279287 GKSVCIVE----GGRVGGADLGGT------VPSKMMYEIAHFAASL-TGPEFVRDLVKPD 1279141

Query: 125     QHN-------WKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKG- 176
               +          + + + ++         +R  L+   V+    KA+F + + +    +G 
Sbjct: 1279140 EMQSIVDGIPSERITQLLRKTCTGKEREYRAFLEASGVQLIEGKATFANPNEIDVHTEGT 1278961

Query: 177     GKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTSVPAAEDVALEC 236
               G+   L A+++VIATG  PR     K      + S  +F +   P    V  A  +  E 
Sbjct: 1278960 GEYRSLQADNVVIATGAIPRSHAFAKCDHNRILNSTSLFEMP-IPASMVVIGAGAMGCEV 1278784

Query: 237     AGFLTGIGLDTTVMMRSIP--LRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQ 294
               A     +G     ++   P  L   D+ ++S V  H+   G    +GC    ++      
Sbjct: 1278783 ASMFAKLGRTKVRLVDKAPRILPKEDEDVASYVQRHLIRRGVVIHQGCRLFDLEA-GEED 1278607

Query: 295     LQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ-EATS 353
                + +  D  SG  +T   +  + A+GR P    L LE   +    +N ++  D       
Sbjct: 1278606 CRYSLRDIFSGDIETYHAERAMVAVGRQPNLGALGLENTKMRV--ENGQLDCDEYGRCKP 1278433

Query: 354     VPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSN---------------- 397
                 HIY IGD A GR +   TA  AG+ +   +FG S  L   +N                
Sbjct: 1278432 YKHIYCIGD-ATGRQKTVNTAQTAGQAVVDTMFGCSPKLAVSNNALTNIATDMFLEDEVA 1278256

Query: 398     -----------------VYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGP 440
                                V    YK L   +    A   ++KM+   +  + VLG+  +GP
Sbjct: 1278255 SIGLSEKQCRASGIGYIVARLEYKHLTRPIV-MGAKDGFVKMIVTNDREKRVLGVRAVGP 1278079

Query: 441     NAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVK 478
               +AG V +  +L I    S   +++    +P+    V++
Sbjct: 1278078 HAGSVVEVASLPILKNESVYTMLKHNPAYPSLVSGVIE 1277965



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 118/519 (22%), Positives = 206/519 (39%), Gaps = 54/519 (10%)
 Frame = -2

Query: 10      AALRGPSRRFRPRT-RALTRGTRGAASAAGGRQSFDLLVIGGGSGGLACAKEAAQLGKKV 68
               A +  PS     RT  ALTR  R +A+A+  +  FD+ VIGGG  G+A A  AA   K+V
Sbjct: 1282957 AVVHSPSVVMLRRTLYALTR-PRDSAAASRDKAHFDVCVIGGGPAGIAAALRAADYNKRV 1282781

Query: 69      AVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQ-AALLGGMIRDA--HHYGWEVAQPVQ 125
                V +         K  LGG  +  G +  K M + +A++  M  DA    YG  + + ++
Sbjct: 1282780 CVVE---------KARLGGNDLWDGALQSKTMWECSAIMAKMRGDAAMRLYGESLDRYLE 1282628

Query: 126     HNWKTMAEAVQNHVKSLNWGHRVQLQ-DRKVKYFNIKASFVDEHTVRGVDKGGKA-TLLS 183
                +   M ++++   +      +  L+    V+    +A+F   H ++   K  K    ++
Sbjct: 1282627 IDEVKMRQSMEQVSRIREEQIQAALKASPNVELVLGRATFSSNHEIQCHSKRTKEFRSIT 1282448

Query: 184     AEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTSVPAAEDVALECAGFLTGI 243
               A++ ++ATG +PR    V       +TSD I      P    +  A  +  E A  +  +
Sbjct: 1282447 ADYFIVATGSKPRKHPYVAADGRLVMTSDHIM-RAPLPKSLVIVGAGVIGCEFASIIGRL 1282271

Query: 244     GLDTTVMMRSIP--LRGFDQQMSSLVTEHMESHGT---------------QFLKGCVPSH 286
               G     ++   P  L   D  +  ++   M+  G                + ++     H
Sbjct: 1282270 GKTKVSIIDKAPHILPREDPDIVRMIESGMDRAGIVVHHNSDLYDMQPWEETVEEAKARH 1282091

Query: 287     -IKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKII 345
                    P + +Q T  D  + K  T   +  L +IGRVP+   L +E   + T   +Q  +
Sbjct: 1282090 PADPAPQSGVQYTVMDRTTRKLTTFQVERALISIGRVPDYSRLGIENTTLKTR-GSQLHV 1281914

Query: 346     VDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVYHAYYKP 405
                +  +    PHI+A+GD A    +L        KL    ++G    ++       +    
Sbjct: 1281913 NEFGQCVGTPHIFAVGDAAT-HMQLVSMGEAQAKLAVDYIYGTEPKVVPNLTETMSSVAF 1281737

Query: 406     LEFTVAD--RDASQC----------------------------YIKMVCMREPPQLVLGL 435
               L   VA    + SQC                            ++K++C  +P + +LG+
Sbjct: 1281736 LTRAVASVGYNESQCREKGIAYIAARYSYEVVSRAVAAANTKGFVKIICADDPERRILGV 1281557

Query: 436     HFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSE 474
                 LG NA  +    AL I+ G     +   +  +P  S+
Sbjct: 1281556 RALGMNASTLVDIGALAIQNGQGVFDLAGRLTAYPAVSQ 1281440


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 37.0 bits (84), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 30/52 (57%)
 Frame = +2

Query: 21     PRTRALTRGTRGAASAAGGRQSFDLLVIGGGSGGLACAKEAAQLGKKVAVAD 72
              PR+   +   R +A+       FDLLVIGGG  GL  A +AAQ G +VA+ D
Sbjct: 163982 PRSSRWSALQRSSAA-----DPFDLLVIGGGLTGLYTAVDAAQRGLRVALVD 164122


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 235    ECAGFLTGIGLDTTVMMRSIPLRGFDQQMSS-----LVTEHMESHGTQFLKG 281
              E   FL GIGL  T +  + PLRG  +         L++ H++ H  + LKG
Sbjct: 585684 ELLNFLIGIGLFLTALTIASPLRGEGEGRKRFLRRPLLSTHLQHHALELLKG 585839


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -2

Query: 36     AAGGRQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCI 95
              A GGR + D LV+GG +G  A   +A   G        ++P   GT+     +CV     
Sbjct: 549688 ALGGRWTGDSLVVGGATGVGAVRGDAFAAGMAKPPPCSMKPDTSGTRATRALSCVKGSST 549509

Query: 96     PKKLMHQAAL 105
               ++L  +A L
Sbjct: 549508 SRRLAEEAPL 549479


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000081_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Mus
musculus # Complete
         (615 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   234   2e-61
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   153   4e-37
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    74   4e-13
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    72   2e-12
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    64   4e-10
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    49   1e-05
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    33   0.53 
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    33   0.64 
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    33   0.77 
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    33   0.96 

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  234 bits (596), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 163/484 (33%), Positives = 249/484 (51%), Gaps = 14/484 (2%)
 Frame = +1

Query: 129    YDLIIIGGGSGGLSCA-KEAANLGKKVMVLDFVVPSPQGTTW--GLGGTCVNVGCIPKKL 185
              YDL+++G GSGGL      AA   KKV V+D  V +  G  +   LGGTCVNVGC+PKKL
Sbjct: 105679 YDLVVLGAGSGGLEAGWNAAATYKKKVAVVD--VQATHGPPFFAALGGTCVNVGCVPKKL 105852

Query: 186    MHQAALLGHALQDAKKYGWEYNQQ-VKHNWEAMTEAIQSHIGSLNWGYRVTLRE-KGVTY 243
              M   A     ++++  +GWE N++ +  NW+ +  A    +  +N  Y+    + +G+++
Sbjct: 105853 MVTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAAKNKVVNGINESYKSMFADTEGLSF 106032

Query: 244    VNSFGEFVDLH-----KIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDD 298
                 FG   D H     K +  N    ET  T    +IATG  P  LG+ GD E+CITS++
Sbjct: 106033 HMGFGALQDAHTVLVRKSEDPNSDVLETLDT-EYILIATGSWPTRLGVPGD-EFCITSNE 106206

Query: 299    LFSLPYCPGCTLVVGASYVGLECAGFLAGL---GLDVTVMVR-SVLLRGFDQEMAEKVGS 354
               F L   P   L VG  Y+ +E AG   G    G  V +  R  ++LRGFD E+ + +  
Sbjct: 106207 AFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGYVDLCYRGDLILRGFDTEVRKSLTK 106386

Query: 355    YLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTR 414
               L   G++ +    P  + + E G        +      +  E  Y+ V+LAIGR   ++
Sbjct: 106387 QLGANGIRVRTNLNPTKITKNEDG--------SNHVHFNDGTEEDYDQVMLAIGRVPRSQ 106542

Query: 415    KIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARRLF 474
               + L+K GV+   KNG + V+   +T+V ++YAIGD+ + +  LTPVAI  G   A  +F
Sbjct: 106543 TLQLDKAGVQ-TAKNGAVQVDAYSKTSVDNIYAIGDVTN-RVMLTPVAINEGAAFAETVF 106716

Query: 475    GVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGRDN 534
              G      D+  +   VF+    G CG++EE+A + +  E + VY + F PL   ++G  +
Sbjct: 106717 GGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNH--ETVAVYESCFTPLMHNISGSKH 106890

Query: 535    NTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 594
                   +II ++   E V+G H+LG +A EI Q     MK G       +TIG+HPT  E 
Sbjct: 106891 KEFMIRIITDQPSGE-VLGVHMLGDSAPEIIQSVGICMKMGAKISDFHNTIGVHPTSAEE 107067

Query: 595    FTTL 598
                ++
Sbjct: 107068 LCSM 107079


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  153 bits (387), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 241/543 (44%), Gaps = 17/543 (3%)
 Frame = +1

Query: 68      LELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSAH 127
               L L +    +S+   +T +S  ++  + F +  H        QAH +     + + + AH
Sbjct: 1324300 LFLSRAPSSSSLPLFVTTLSGPRSNTHTFPHFTHT-------QAHTS-----MFRRNIAH 1324443

Query: 128     --DYDLIIIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKK- 184
                  YD+ +IGGG GG   A +AA LG K   ++            LGGTC+NVGCIP K 
Sbjct: 1324444 LASYDVTVIGGGPGGYVAAIKAAQLGLKTACIE--------KRGALGGTCLNVGCIPSKA 1324599

Query: 185     LMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYV 244
               L+H   L   A  +  +YG    + V  +  AM       + +L  G     ++  VTY 
Sbjct: 1324600 LLHATHLYHDAHANFAQYGLRGGENVTMDVSAMQAQKGKGVKALTGGVEYLFKKNKVTYY 1324779

Query: 245     NSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLG-IQGDKEYCITSDDLFSLP 303
                  G FV+ + IK     G+E    + K ++ATG  P  L  +  D++  ++S     L 
Sbjct: 1324780 KGEGSFVNPNTIKVKGLDGKEETLESKKTIVATGSEPTELPFLPFDEKVVMSSTGALDLD 1324959

Query: 304     YCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKF 363
               + P   +VVG   +GLE     A LG +VTV+           E A +  +  +      
Sbjct: 1324960 HVPKKMIVVGGGVIGLELGSVWARLGAEVTVV-----------EFASRCAATTD---ADV 1325097

Query: 364     QRKFTPILVQQLEKGLPGKLKVVAKSTEGP------ETVEGIYNT-----VLLAIGRDSC 412
                +  T  LV+  +  +    KVV+ +  G       E  +G + T     +L ++GR   
Sbjct: 1325098 SKALTDALVKHEKMKIMTNTKVVSGTNNGSSVTIEVEDKDGKHQTLEADALLCSVGRRPH 1325277

Query: 413     TRKIGLEKIGVKINEKNGKIPVNDVEQTNVPHVYAIGDILDGKPELTPVAIQAGKLLARR 472
               T  +  E I +++  + G I +ND  +TNVP+VYAIGD+++  P L   A + G   A  
Sbjct: 1325278 TTGLNAEAINLQM--ERGFICINDHFETNVPNVYAIGDVVNKGPMLAHKAEEEGVACAEI 1325451

Query: 473     LFGVSLEKCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGR 532
               L G      +Y  IP  ++T  E    G +EE+     KK  ++ Y    +P       +
Sbjct: 1325452 LAG-KPGHVNYSVIPGVIYTNPEVAQVGETEEQV----KKRGID-YKVGKFPFSANSRAK 1325613

Query: 533     DNNT--CYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIGIHPT 590
                  T   + K++ +K   +R++G  ++   AGE+      AM+ G + + L  T   HPT
Sbjct: 1325614 AVGTEDGFVKVVTDK-KTDRILGVQIVCTAAGEMIAEPTLAMEYGASSEDLGRTCHAHPT 1325790

Query: 591     CGE 593
                 E
Sbjct: 1325791 MSE 1325799


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 109/456 (23%), Positives = 189/456 (41%), Gaps = 18/456 (3%)
 Frame = -2

Query: 129    YDLIIIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKKLMHQ 188
              +D+ ++GGG  G++ A  A  LGKK  +++            +GG     G +  K + +
Sbjct: 818560 FDVCVLGGGPAGIAAAVRAYELGKKACIIE---------ESRIGGADFWNGALQSKTLWE 818408

Query: 189    AA-----LLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTY 243
               A      +G+      K   E   ++KH+   + +AI +   +        L    +  
Sbjct: 818407 MAKFARYTMGNTSHRFMKSVIEL-PKIKHS--NLIKAITNAAETRETQTLEVLANAHIEV 818237

Query: 244    VNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPR-YLGIQGDKEYCITSDDLFSL 302
              ++  G F   + +  T K G E    A  FVIATG  PR +     D +   TSDD+   
Sbjct: 818236 LSGLGSFKTPNSVAVTKKDGTEETVEADYFVIATGAHPRPHPTAVADGKVVFTSDDIMMQ 818057

Query: 303    PYCPGCTLVVGASYVGLECAGFLAGLGL-DVTVMVRS-VLLRGFDQEMAEKVGSYLEQQG 360
              P  P   +++GA  +G E A   A  G+  V ++ +S  +L   D+++A  V + LEQ+G
Sbjct: 818056 PL-PKSIVIIGAGVIGCEFASIFANFGVTQVNIIEKSGRILPMEDEDIALFVQTLLEQKG 817880

Query: 361    VKFQRKFTPILVQQLEKGL--PGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTRKIGL 418
              V F           +E      GK     +        + + ++ L++IGR     K+ L
Sbjct: 817879 VCFHHH------SAMESSSINDGKFHYTLRDVRDNSLHQHVTDSALVSIGRVPAISKLNL 817718

Query: 419    EKIGVKINEKNGKIPVNDVEQTNV-PHVYAIGDILDGKPELTPVAIQAGKLLARRLFGVS 477
              E IG+ +  K  +I  ++  +     H+YA GD    +  L  VA   G+     ++   
Sbjct: 817717 EAIGITV--KGNRIDRDEFLRIEPHKHIYACGDTCT-RVALVNVAELEGRACIDHMYTPY 817547

Query: 478    LE---KCDYINIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLEWTVAGR-- 532
               E   K    N+ T +F   E    GL+E++  +M     +  Y        +   GR  
Sbjct: 817546 PEEQLKLKLDNLSTIMFLDQEVAAVGLNEQQCQKMSISYKMARY-------SYEYVGRAL 817388

Query: 533    --DNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQ 566
                 N   + K++       +V+G   +GP+A  I +
Sbjct: 817387 AMGNTRGFIKLVVTNDKKMQVLGVRAVGPHASSIIE 817280


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 119/462 (25%), Positives = 197/462 (42%), Gaps = 25/462 (5%)
 Frame = -3

Query: 130     DLIIIGGGSGGLSCAKEAANLGKKVMVLDFVVPSPQGTTWG--LGGTCVNVGCIPKKLMH 187
               DL +IGGG GG++ A  A   GK V +++       G   G  LGGT      +P K+M+
Sbjct: 1279350 DLCVIGGGPGGIAAAMRAIGYGKSVCIVE------GGRVGGADLGGT------VPSKMMY 1279207

Query: 188     QAALLGHALQDAKKYGWEYNQQ-VKHN----------WEAMTEAIQSHIGSLNWGYRVTL 236
               + A    +L      G E+ +  VK +           E +T+ ++         YR  L
Sbjct: 1279206 EIAHFAASLT-----GPEFVRDLVKPDEMQSIVDGIPSERITQLLRKTCTGKEREYRAFL 1279042

Query: 237     REKGVTYVNSFGEFVDLHKIKA-TNKKGQETFYTASKFVIATGERPR-YLGIQGDKEYCI 294
                  GV  +     F + ++I   T   G+     A   VIATG  PR +   + D    +
Sbjct: 1279041 EASGVQLIEGKATFANPNEIDVHTEGTGEYRSLQADNVVIATGAIPRSHAFAKCDHNRIL 1278862

Query: 295     TSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSV--LLRGFDQEMAEKV 352
                S  LF +P  P   +V+GA  +G E A   A LG     +V     +L   D+++A  V
Sbjct: 1278861 NSTSLFEMP-IPASMVVIGAGAMGCEVASMFAKLGRTKVRLVDKAPRILPKEDEDVASYV 1278685

Query: 353     GSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSC 412
                 +L ++GV   +      ++  E+     L+ +       ET        ++A+GR   
Sbjct: 1278684 QRHLIRRGVVIHQGCRLFDLEAGEEDCRYSLRDIFSGD--IETYHA--ERAMVAVGRQPN 1278517

Query: 413     TRKIGLEKIGVKINEKNGKIPVNDVEQTN-VPHVYAIGDILDGKPELTPVAIQAGKLLAR 471
                  +GLE   +++  +NG++  ++  +     H+Y IGD   G+ +    A  AG+ +  
Sbjct: 1278516 LGALGLENTKMRV--ENGQLDCDEYGRCKPYKHIYCIGDA-TGRQKTVNTAQTAGQAVVD 1278346

Query: 472     RLFGVS----LEKCDYINIPTTVFTPLEYGCCGLSEEKAIEM---YKKENLEVYHTLFWP 524
                +FG S    +      NI T +F   E    GLSE++       Y    LE  H L  P
Sbjct: 1278345 TMFGCSPKLAVSNNALTNIATDMFLEDEVASIGLSEKQCRASGIGYIVARLEYKH-LTRP 1278169

Query: 525     LEWTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQ 566
               +   +  +D    + K+I      +RV+G   +GP+AG + +
Sbjct: 1278168 I--VMGAKDG---FVKMIVTNDREKRVLGVRAVGPHAGSVVE 1278058



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 150/369 (40%), Gaps = 23/369 (6%)
 Frame = -2

Query: 250     FVDLHKIKATNKKGQE-TFYTASKFVIATGERPR-YLGIQGDKEYCITSDDLFSLPYCPG 307
               F   H+I+  +K+ +E    TA  F++ATG +PR +  +  D    +TSD +   P  P 
Sbjct: 1282510 FSSNHEIQCHSKRTKEFRSITADYFIVATGSKPRKHPYVAADGRLVMTSDHIMRAPL-PK 1282334

Query: 308     CTLVVGASYVGLECAGFLAGLG-LDVTVMVRSV-LLRGFDQEMAEKVGSYLEQQGVKFQR 365
                 ++VGA  +G E A  +  LG   V+++ ++  +L   D ++   + S +++ G+    
Sbjct: 1282333 SLVIVGAGVIGCEFASIIGRLGKTKVSIIDKAPHILPREDPDIVRMIESGMDRAGIVVHH 1282154

Query: 366     KFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTV----------------LLAIGR 409
                     +Q  E+ +    +  A+    P    G+  TV                L++IGR
Sbjct: 1282153 NSDLYDMQPWEETVE---EAKARHPADPAPQSGVQYTVMDRTTRKLTTFQVERALISIGR 1281983

Query: 410     DSCTRKIGLEKIGVKINEKNGKIPVNDVEQ-TNVPHVYAIGDILDGKPELTPVAIQAGKL 468
                    ++G+E   +K   +  ++ VN+  Q    PH++A+GD      +L  +     KL
Sbjct: 1281982 VPDYSRLGIENTTLKT--RGSQLHVNEFGQCVGTPHIFAVGDAAT-HMQLVSMGEAQAKL 1281812

Query: 469     LARRLFGVSLEKCDYI--NIPTTVFTPLEYGCCGLSEEKAIEMYKKENLEVYHTLFWPLE 526
                   ++G   +    +   + +  F        G +E +  E   K    +     + + 
Sbjct: 1281811 AVDYIYGTEPKVVPNLTETMSSVAFLTRAVASVGYNESQCRE---KGIAYIAARYSYEVV 1281641

Query: 527     WTVAGRDNNTCYAKIICNKFDNERVVGFHLLGPNAGEITQGFAAAMKCGLTKQLLDDTIG 586
                      N   + KIIC      R++G   LG NA  +    A A++ G     L   + 
Sbjct: 1281640 SRAVAAANTKGFVKIICADDPERRILGVRALGMNASTLVDIGALAIQNGQGVFDLAGRLT 1281461

Query: 587     IHPTCGEVF 595
                +P   + F
Sbjct: 1281460 AYPAVSQAF 1281434


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 49/85 (57%)
 Frame = +1

Query: 33     DLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTV 92
              +LI  ++V++FS  +CP+ +R KE+  SL     + E DQ+D+G  ++  + +  N  TV
Sbjct: 321253 ELITQHKVVVFSWVHCPYCSRAKEILKSLAKDIQVYECDQMDNGEELRTQILQAYNHDTV 321432

Query: 93     PNIFVNKVHVGGCDRTFQAHQNGLL 117
              P IF+N   +GGC       ++G L
Sbjct: 321433 PAIFINGEFIGGCSDLQAIQKSGEL 321507


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 48/92 (52%)
 Frame = +3

Query: 31     LRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQK 90
              L  ++  NR+++ S +YC  ST++K L   L   +  LE+D + +G  V + +   +   
Sbjct: 416784 LDSMLRRNRIVLISATYCQFSTKLKMLLIELKHRFVSLEIDIIPNGREVFQEVVARTGVH 416963

Query: 91     TVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQ 122
              TVP +F+N  ++GG D     +    L + L+
Sbjct: 416964 TVPQVFLNGKYLGGYDDLIALYHKRELSETLE 417059



 Score = 35.0 bits (79), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 121    LQDDSAHD-YDLIIIGGGSGGLSCAKEAANLGKKVMVLD 158
              LQ  SA D +DL++IGGG  GL  A +AA  G +V ++D
Sbjct: 164006 LQRSSAADPFDLLVIGGGLTGLYTAVDAAQRGLRVALVD 164122


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 33.5 bits (75), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = -2

Query: 125    SAHDYDLIIIGGGSGGLSCAKEAANLGKKVMVLD 158
              +++DYD+II+GG   G   AK  ++ G+KV++++
Sbjct: 612771 TSYDYDVIIVGGSIAGPVLAKALSDQGRKVLMVE 612670


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 33.1 bits (74), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +1

Query: 131    LIIIGGGSGGLSCAKEAANLGKKVMVLD 158
              +II+GGG  G S A EAAN G +V++L+
Sbjct: 537268 VIIVGGGLAGCSAAIEAANCGAQVILLE 537351


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 32.7 bits (73), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 6      GRRARLASPGTSRPSSEAREELR 28
              GRRAR A   T+ P S+ARE LR
Sbjct: 109250 GRRARSAPSATTHPCSQARESLR 109182


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 32.7 bits (73), Expect = 0.96,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 4      PPGRRARLASPGTSRPSSEAREELRRRLRDL 34
              PPG+R R++SPGT R        LR+R+R L
Sbjct: 123024 PPGKRVRVSSPGTHR--------LRKRVRPL 123092


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000064_1.0 # Protein # Selenoprotein 15 (Sel15) #
Tetraodon nigroviridis # Complete
         (153 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    30   0.75 
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    28   2.2  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    27   7.3  

>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 30.0 bits (66), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 23     ELSSEACRELGFSSNLLCTSCDLLGEFSLAKLQPNCQQCCQQEALMEGRKLYPG 76
              +L + A +++  S N  C +C+  G  S  K +  C QC  + AL+  ++++PG
Sbjct: 156909 DLYNGATKKVMISRNRFCGACEGSGLKSGGK-RTTCAQCRGRGALLRTQQVFPG 157067



 Score = 26.9 bits (58), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 62     CQQEALMEGRKLYPGAILEVCG 83
              CQ   L+ G+ L  GAIL+ CG
Sbjct: 464449 CQHVRLVRGKSLRRGAILQCCG 464514


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 28.5 bits (62), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 52     AKLQPNCQQCCQQEALM 68
              A L+PNCQ+CC  + L+
Sbjct: 535923 ASLRPNCQRCCPADTLL 535873


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 26.6 bits (57), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 3      GEVYLLWLLSLLKTLSAYGAELSSEACRELGFS 35
              G +Y L+LLS L+ + A     +S ACR   F+
Sbjct: 941661 GTLYRLYLLSKLERVRAPAGRSNSSACRHQPFA 941759


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000092_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Drosophila melanogaster # Complete
         (511 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...   288   9e-78
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...   104   2e-22
LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    86   6e-17
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    80   3e-15
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    65   1e-10
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    61   2e-09
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    56   8e-08
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    52   8e-07
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    51   2e-06
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    49   1e-05
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    45   1e-04
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    45   1e-04
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    42   0.001
LmjF02_01_20050601_V5.2 [~/leish/curated/chr2/LmjF02_01_20050601...    33   0.44 

>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score =  288 bits (736), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 187/466 (40%), Positives = 248/466 (53%), Gaps = 72/466 (15%)
 Frame = +1

Query: 3       INFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLV------- 55
               +N NIGLLGHVDSGKT LAKALSS +STAAFDK+PQS  RGITLDLGFS   V       
Sbjct: 1301254 LNVNIGLLGHVDSGKTALAKALSSTASTAAFDKSPQSQSRGITLDLGFSACEVSVEDGNE 1301433

Query: 56      DAPAHLPQGE--QLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLI 113
               DA   L   E  ++Q T VDCPGHASLIRT++GGAQIID M+LVVDA KG Q QTAECL+
Sbjct: 1301434 DATQVLRAAELTKVQCTLVDCPGHASLIRTVVGGAQIIDAMVLVVDATKGIQVQTAECLV 1301613

Query: 114     IGELLQKKLIVVINKID----VYPENQRASKLEKLRLRLAKTLEATTFGGQVPICAVSA- 168
               +GE+L K L+VV+NKID    V P  + A+ L  L+ +L +    T +   V I  V+A 
Sbjct: 1301614 LGEVLAKPLVVVLNKIDAIQGVSPAGKEAA-LAALKRKLQQVFRRTRW-PTVAIVEVAAA 1301787

Query: 169     ---------------------LQGTHIAELREVLREAYFQPQRNLADPLFMYVDHCFGIK 207
                                    L+   +A L+        +P +      +M VDHCF ++
Sbjct: 1301788 PREVAGGIGHPVNTEAVLPQVLRAVDLAALKSAKESEAERPAQ-----FYMLVDHCFAVR 1301952

Query: 208     GQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQFNA 267
               GQGTV TGT++ G V+V + + +P L   RKVK +Q F K V  A  GDR+GLCV QF+ 
Sbjct: 1301953 GQGTVFTGTVVAGVVRVGDTVLVPELQTTRKVKGLQAFHKPVELAQGGDRVGLCVAQFDP 1302132

Query: 268     KLLERGIITQPG----YLKPIYAVCLQFKPIRYYKEVIKSMRKMHISVGHNTVMANVTLF 323
                 +ERG++         L     +  +   +RY+     +  + HI++GH TVM  +  F
Sbjct: 1302133 TWMERGVVCSAASSGRTLVSSSQLIARVHRVRYHPLPCDTHTRFHITIGHATVMGTMRYF 1302312

Query: 324     R---------DTDGTTSTFQLDKEYEYMED------------------------VQPAEV 350
                         D  GT + F    E  Y+E+                        V PAE 
Sbjct: 1302313 ARLPHANESLDVPGTVAAFDPSIESAYVEELDDGVVARYTSTDTTAGVPGRPLPVAPAEQ 1302492

Query: 351     QHNDVIYALLQFESPVLSPPHSTLIASKLDMDVHSTSCRLAFWGRI 396
                +    YA+L  E PVL+ P  +LIA +LD++     CR+A  G +
Sbjct: 1302493 DY----YAVLLLERPVLAAPGLSLIAMRLDVE-RENFCRIALAGTV 1302615



 Score = 42.4 bits (98), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
 Frame = +1

Query: 6      NIGLLGHVDSGKTTLAKALSSIS-------STAAF-DKNPQSVERGITLDLGFSGLLVDA 57
              N+ ++ HVD GKTTL+ A+   S       +T  F D+     ERGIT+      +L+  
Sbjct: 243328 NVSVVAHVDHGKTTLSDAMLRFSNLLPADGATGTFTDRLKVEKERGITIKAQTCSVLLTV 243507

Query: 58     PAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQT 108
                    G Q     +D PGH      +       +   L+VD ++G + QT
Sbjct: 243508 RE---TGTQYLVNLIDTPGHVDFQYEVSRSLCASEGAALLVDVRQGVEAQT 243651


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score =  104 bits (259), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 141/300 (47%), Gaps = 31/300 (10%)
 Frame = +1

Query: 7      IGLLGHVDSGKTTLAKALSSISSTA---------AFDKNPQSVERGITLDLGFSGLLVDA 57
              IG +GHVD GKTTL  A++++ +           A DK+P+   R IT++          
Sbjct: 314722 IGTIGHVDHGKTTLTSAITTVLAKRGQAQALDYFAIDKSPEEKSRKITIN---------- 314871

Query: 58     PAHLP-QGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLII-G 115
                H+  + E+  +  +DCPGH   ++ +I GA  +D  ++VV A  G   QT E L+I  
Sbjct: 314872 ATHVEYESEKRHYGHIDCPGHMDFVKNMITGAAQMDGGIIVVAATDGVMPQTREHLLICS 315051

Query: 116    ELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTF-GGQVPICAVSALQGT-- 172
              ++    L+  INK+D+  E+      + + + + + LE   F   + PI   SAL+    
Sbjct: 315052 QIGLPALVGFINKVDMTDED----TCDLVDMEVREQLEKYKFPAEETPIVRGSALKAVEG 315219

Query: 173    ------HIAELREVLREAYFQPQRNLADPLFMYVDHCF--GIKGQGTVCTGTLLQGKVQV 224
                    +I EL     E    P RN   P  M ++H +  G   +  + TG + QG +++
Sbjct: 315220 DAKYEENILELVRKCDEWIPDPPRNTDKPFLMAIEHVYEIGKDKKSVIVTGRVDQGVLKL 315399

Query: 225    NNVIELPALGEQR---KVKSIQMFRKNVTSASMGDRIGLCV------TQFNAKLLERGII 275
              N   EL     ++   +V  I+M+ K ++    GD +G+ +      T  +   +ERG++
Sbjct: 315400 NTDAELAGFSAKKSTVRVTGIEMYHKTLSECMPGDSVGVSIVGTGDTTSLSKDNVERGMV 315579


>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 122/268 (45%), Gaps = 36/268 (13%)
 Frame = -1

Query: 6      NIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLV---------- 55
              N+G +GHV  GK+T+ KALS + +     K  +     IT+ LG++   V          
Sbjct: 436893 NVGTIGHVAHGKSTVVKALSGVKT----QKFHREAVMNITIHLGYANAKVYQCETCPRPT 436726

Query: 56     ---DAPAHLPQ-------GEQL----QFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQ 101
                   P+  P        GE +     F+FVDCPGH  L+ T++ GA I+D  LL++ A 
Sbjct: 436725 CYQTYPSSQPDSTPCPNCGETMTLKRHFSFVDCPGHDVLMATMLNGAAIMDAALLLIAAN 436546

Query: 102    KG-KQTQTAECLIIGELLQ-KKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGG 159
              +   Q QT E L   E+++ + L+V+ NKID+  E +   +   +R  L           
Sbjct: 436545 ESFPQPQTLEHLKAVEIMKLRHLVVLQNKIDLVGEVKAHDQYRHVRAYL------DNIAL 436384

Query: 160    QVPICAVSALQGTHIAELREVLREAYFQPQRNLADPLFMYVDHCFGIKG---------QG 210
               VPI  +SA    ++  L E L      P R L  P+ M V   F I           +G
Sbjct: 436383 NVPIVPISAQLKRNVDYLLEYLLHIPM-PVRQLKAPVRMTVVRSFDINKPGEGDIESLKG 436207

Query: 211    TVCTGTLLQGKVQVNNVIEL-PALGEQR 237
               V  GT+ QG ++V  V+E+ P L   R
Sbjct: 436206 GVAGGTVTQGVIKVGQVVEIRPGLVRSR 436123



 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 129/285 (45%), Gaps = 38/285 (13%)
 Frame = -3

Query: 6      NIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLV---------- 55
              N+G +GHV  GK+T+ KALS + +     K  +     IT+ LG++   V          
Sbjct: 439702 NVGTIGHVAHGKSTVVKALSGVKT----QKFHREAVMNITIHLGYANAKVYQCETCPRPT 439535

Query: 56     ---DAPAHLPQ-------GEQL----QFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQ 101
                   P+  P        GE +     F+FVDCPGH  L+ T++ GA I+D  LL++ A 
Sbjct: 439534 CYQTYPSSQPDSTPCPNCGETMTLKRHFSFVDCPGHDVLMATMLNGAAIMDAALLLIAAN 439355

Query: 102    KG-KQTQTAECLIIGELLQK-KLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGG 159
              +   Q QT E L   E++    LIV+ NK+D+  + + A++   +   LA      T   
Sbjct: 439354 ESFPQPQTLEHLAAAEMIGVLSLIVLQNKVDLVSKERAAAQYSIIHHYLA----TKTAYA 439187

Query: 160    QVPICAVSALQGTHIAELREVLREAYFQPQRNLADPLFMYVDHCF----------GIKG- 208
              + P+  + A Q  +I+ L + L      P+R L    +M V   F          G K  
Sbjct: 439186 KAPVIPICAQQHANISFLLDYLVHIPL-PRRQLHHAQYMNVLRSFDVSLPGPAGDGAKAL 439010

Query: 209    QGTVCTGTLLQGKVQVNNVIE-LPALGEQRKVKSIQMFRKNVTSA 252
              +G V  GT+  G + V + IE +P L   R+   +   R +V S 
Sbjct: 439009 KGGVIGGTVAAGVLCVGDEIEIIPGLLVLRRRDGVLPRRADVLSG 438875


>LmjF17_01_20050601_V5.2
             [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 44/315 (13%)
 Frame = -1

Query: 3     INFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQ 38
             ++ N+ ++GHVD+GK+T    L                        +S       DK   
Sbjct: 36588 VHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKA 36409

Query: 39    SVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVV 98
               ERGIT+D+       ++P  +       FT +D PGH   I+ +I G    D  +L++
Sbjct: 36408 ERERGITIDIALWKF--ESPKSV-------FTIIDAPGHRDFIKNMITGTSQADAAILMI 36256

Query: 99    DAQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK 150
             D+  G       K  QT E  L+   L  K+++V  NK+D        S+ +++   +  
Sbjct: 36255 DSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGA 36076

Query: 151   TLEATTFGGQ-VPICAVSALQGTHIAELREVLR-----------EAYFQPQRNLADPLFM 198
              L+   +  + V    +S  QG ++ E  + +            +    P R +  PL +
Sbjct: 36075 YLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEPPVRPVDKPLRL 35896

Query: 199   YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258
              +   + I G GTV  G +  G ++  +V+         +VKSI+M  + +  A  GD +
Sbjct: 35895 PLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNV 35716

Query: 259   GLCVTQFNAKLLERG 273
             G  V   + K + RG
Sbjct: 35715 GFNVKNVSVKDIRRG 35671



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 131/315 (41%), Gaps = 44/315 (13%)
 Frame = -1

Query: 3     INFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQ 38
             ++ N+ ++GHVD+GK+T    L                        +S       DK   
Sbjct: 34392 VHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKA 34213

Query: 39    SVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVV 98
               ERGIT+D+       ++P  +       FT +D PGH   I+ +I G    D  +L++
Sbjct: 34212 ERERGITIDIALWKF--ESPKSV-------FTIIDAPGHRDFIKNMITGTSQADAAILMI 34060

Query: 99    DAQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK 150
             D+  G       K  QT E  L+   L  K+++V  NK+D        S+ +++   +  
Sbjct: 34059 DSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGA 33880

Query: 151   TLEATTFGGQ-VPICAVSALQGTHIAELRE--------VLREAYFQ---PQRNLADPLFM 198
              L+   +  + V    +S  QG ++ E  +         L +A      P R +  PL +
Sbjct: 33879 YLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALGMLEPPVRPVDKPLRL 33700

Query: 199   YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258
              +   + I G GTV  G +  G ++  +V+         +VKSI+M  + +  A  GD +
Sbjct: 33699 PLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNV 33520

Query: 259   GLCVTQFNAKLLERG 273
             G  V   + K + RG
Sbjct: 33519 GFNVKNVSVKDIRRG 33475



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 44/315 (13%)
 Frame = -2

Query: 3     INFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQ 38
             ++ N+ ++GHVD+GK+T    L                        +S       DK   
Sbjct: 29987 VHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKA 29808

Query: 39    SVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVV 98
               ERGIT+D+       ++P  +       FT +D PGH   I+ +I G    D  +L++
Sbjct: 29807 ERERGITIDIALWKF--ESPKSV-------FTIIDAPGHRDFIKNMITGTSQADAAILMI 29655

Query: 99    DAQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK 150
             D+  G       K  QT E  L+   L  K+++V  NK+D        S+ +++   +  
Sbjct: 29654 DSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGA 29475

Query: 151   TLEATTFGGQ-VPICAVSALQGTHIAELREVLR-----------EAYFQPQRNLADPLFM 198
              L+   +  + V    +S  QG ++ E  + +            +    P R +  PL +
Sbjct: 29474 YLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEPPVRPVDKPLRL 29295

Query: 199   YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258
              +   + I G GTV  G +  G ++  +V+         +VKSI+M  + +  A  GD +
Sbjct: 29294 PLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNV 29115

Query: 259   GLCVTQFNAKLLERG 273
             G  V   + K + RG
Sbjct: 29114 GFNVKNVSVKDIRRG 29070



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 44/315 (13%)
 Frame = -1

Query: 3     INFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQ 38
             ++ N+ ++GHVD+GK+T    L                        +S       DK   
Sbjct: 38784 VHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKA 38605

Query: 39    SVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVV 98
               ERGIT+D+       ++P  +       FT +D PGH   I+ +I G    D  +L++
Sbjct: 38604 ERERGITIDIALWKF--ESPKSV-------FTIIDAPGHRDFIKNMITGTSQADAAILMI 38452

Query: 99    DAQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK 150
             D+  G       K  QT E  L+   L  K+++V  NK+D        S+ +++   +  
Sbjct: 38451 DSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGA 38272

Query: 151   TLEATTFGGQ-VPICAVSALQGTHIAELREVLR-----------EAYFQPQRNLADPLFM 198
              L+   +  + V    +S  QG ++ E  + +            +    P R +  PL +
Sbjct: 38271 YLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEPPVRPVDKPLRL 38092

Query: 199   YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258
              +   + I G GTV  G +  G ++  +V+         +VKSI+M  + +  A  GD +
Sbjct: 38091 PLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNV 37912

Query: 259   GLCVTQFNAKLLERG 273
             G  V   + K + RG
Sbjct: 37911 GFNVKNVSVKDIRRG 37867



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 44/315 (13%)
 Frame = -2

Query: 3     INFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQ 38
             ++ N+ ++GHVD+GK+T    L                        +S       DK   
Sbjct: 32183 VHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKA 32004

Query: 39    SVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVV 98
               ERGIT+D+       ++P  +       FT +D PGH   I+ +I G    D  +L++
Sbjct: 32003 ERERGITIDIALWKF--ESPKSV-------FTIIDAPGHRDFIKNMITGTSQADAAILMI 31851

Query: 99    DAQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK 150
             D+  G       K  QT E  L+   L  K+++V  NK+D        S+ +++   +  
Sbjct: 31850 DSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGA 31671

Query: 151   TLEATTFGGQ-VPICAVSALQGTHIAELREVLR-----------EAYFQPQRNLADPLFM 198
              L+   +  + V    +S  QG ++ E  + +            +    P R +  PL +
Sbjct: 31670 YLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEPPVRPVDKPLRL 31491

Query: 199   YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258
              +   + I G GTV  G +  G ++  +V+         +VKSI+M  + +  A  GD +
Sbjct: 31490 PLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNV 31311

Query: 259   GLCVTQFNAKLLERG 273
             G  V   + K + RG
Sbjct: 31310 GFNVKNVSVKDIRRG 31266



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 44/315 (13%)
 Frame = -3

Query: 3     INFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQ 38
             ++ N+ ++GHVD+GK+T    L                        +S       DK   
Sbjct: 43201 VHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKA 43022

Query: 39    SVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVV 98
               ERGIT+D+       ++P  +       FT +D PGH   I+ +I G    D  +L++
Sbjct: 43021 ERERGITIDIALWKF--ESPKSV-------FTIIDAPGHRDFIKNMITGTSQADAAILMI 42869

Query: 99    DAQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK 150
             D+  G       K  QT E  L+   L  K+++V  NK+D        S+ +++   +  
Sbjct: 42868 DSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGA 42689

Query: 151   TLEATTFGGQ-VPICAVSALQGTHIAELREVLR-----------EAYFQPQRNLADPLFM 198
              L+   +  + V    +S  QG ++ E  + +            +    P R +  PL +
Sbjct: 42688 YLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEPPVRPVDKPLRL 42509

Query: 199   YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258
              +   + I G GTV  G +  G ++  +V+         +VKSI+M  + +  A  GD +
Sbjct: 42508 PLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNV 42329

Query: 259   GLCVTQFNAKLLERG 273
             G  V   + K + RG
Sbjct: 42328 GFNVKNVSVKDIRRG 42284



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 130/315 (41%), Gaps = 44/315 (13%)
 Frame = -1

Query: 3     INFNIGLLGHVDSGKTTLAKAL------------------------SSISSTAAFDKNPQ 38
             ++ N+ ++GHVD+GK+T    L                        +S       DK   
Sbjct: 40992 VHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKA 40813

Query: 39    SVERGITLDLGFSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVV 98
               ERGIT+D+       ++P  +       FT +D PGH   I+ +I G    D  +L++
Sbjct: 40812 ERERGITIDIALWKF--ESPKSV-------FTIIDAPGHRDFIKNMITGTSQADAAILMI 40660

Query: 99    DAQKG-------KQTQTAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK 150
             D+  G       K  QT E  L+   L  K+++V  NK+D        S+ +++   +  
Sbjct: 40659 DSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGA 40480

Query: 151   TLEATTFGGQ-VPICAVSALQGTHIAELREVLR-----------EAYFQPQRNLADPLFM 198
              L+   +  + V    +S  QG ++ E  + +            +    P R +  PL +
Sbjct: 40479 YLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEPPVRPVDKPLRL 40300

Query: 199   YVDHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRI 258
              +   + I G GTV  G +  G ++  +V+         +VKSI+M  + +  A  GD +
Sbjct: 40299 PLQDVYKIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNV 40120

Query: 259   GLCVTQFNAKLLERG 273
             G  V   + K + RG
Sbjct: 40119 GFNVKNVSVKDIRRG 40075


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 103/238 (43%), Gaps = 21/238 (8%)
 Frame = -2

Query: 1      MPINFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAP-A 59
              +P +  + ++GHVD GKTTL   L   ++ AA +        GIT ++G     V  P  
Sbjct: 515067 LPRSPIVSIMGHVDHGKTTLLDHLRH-TNVAAGEAG------GITQNVG--AFQVKTPDG 514915

Query: 60     HLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQ 119
              H+        TF+D PGHA+       GA   DL++L+V A  G Q QT E +   EL Q
Sbjct: 514914 HI-------ITFIDTPGHAAFTAMREVGATTNDLIVLIVSAVDGVQPQTREVI---ELAQ 514765

Query: 120    KK---LIVVINKIDVYPENQRASKLEKLRLRLAKT-LEATTFGGQVPICAVSALQGTHIA 175
              +K   ++V + KID  P+       + ++ +LA   ++    GG V +  + A  G  I 
Sbjct: 514764 RKGTPMVVAVTKIDRQPD------CDYVKDQLAANGVDLEEKGGDVQLVKICAKDGRGIP 514603

Query: 176    ELREVLR----------------EAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTL 217
              EL E L                 E Y    RNL       V  C  +K      TGT+
Sbjct: 514602 ELLEALHLQAELCEVATPTPSRAEMYVLESRNLGVSEVAAVVRCGTVKPGQVFVTGTV 514429



 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
 Frame = -1

Query: 61     LPQGEQLQFTFVDCPGHA-------------SLIRTIIGGAQIIDLMLLVVDAQKGKQTQ 107
              LP G  LQ TFVD PG+               L     G  + ++ +L  +D ++G    
Sbjct: 279277 LPGG-GLQLTFVDLPGYGIEGMSDKWRDAAIELTDAYFGVRRSVNTVLYCMDCERGLTKT 279101

Query: 108    TAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQVP-ICAV 166
                + L   E +     +V+ K D  P ++  S + ++   + K      +    P I  V
Sbjct: 279100 DIKYLEWIENVHGACFMVLTKCDSVPHSRVCSVMRQVYALITK--HRRKYRKVFPFIIPV 278927

Query: 167    SALQGTHIAELREVLRE 183
              SA  GT+I  LR ++ E
Sbjct: 278926 SAKDGTNIELLRGLITE 278876



 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
 Frame = +2

Query: 61     LPQGEQLQFTFVDCPGHA-------------SLIRTIIGGAQIIDLMLLVVDAQKGKQTQ 107
              LP G  LQ TFVD PG+               L     G  + ++ +L  +D ++G    
Sbjct: 330761 LPGG-GLQLTFVDLPGYGIEGMSDKWRDAAIELTDAYFGVRRSVNTVLYCMDCERGLTKT 330937

Query: 108    TAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTFGGQVP-ICAV 166
                + L   E +     +V+ K D  P ++  S + ++   + K      +    P I  V
Sbjct: 330938 DIKYLEWIENVHGACFMVLTKCDSVPHSRVCSVMRQVYALITK--HRRKYRKVFPFIIPV 331111

Query: 167    SALQGTHIAELREVLRE 183
              SA  GT+I  LR ++ E
Sbjct: 331112 SAKDGTNIELLRGLITE 331162


>LmjF25_01_20050601_V5.2
             [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
 Frame = -3

Query: 6     NIGLLGHVDSGKTTLAKALSSISSTAA------FDKNPQSVERGITLDLGFSGLLVDAPA 59
             NI ++ HVD GKTTL  ++ S S T A       D   Q  ERGIT+    + +L+D   
Sbjct: 42661 NIAVIAHVDHGKTTLVDSMLSQSGTVANAHNRVMDSKDQERERGITILAKNTAILLD--- 42491

Query: 60    HLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQ 119
                 G++ +   VD PGH      +    Q+++ ++L+VDA++G +  T   L     L 
Sbjct: 42490 ---NGKR-RINIVDTPGHLDFSGEVERALQMVEGIILLVDAKEGVRPGTRYVLRKALSLH 42323

Query: 120   KKLIVVINKID 130
              + IV +NKID
Sbjct: 42322 LRPIVCLNKID 42290



 Score = 37.4 bits (85), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
 Frame = -2

Query: 6      NIGLLGHVDSGKTTLAKALSSISSTAA---------FDKNPQSVERGITLDLGFSGLLVD 56
              N  ++ HVD GKTTL+  L + +   +          D  P   ER IT+      L   
Sbjct: 805802 NFCMVAHVDHGKTTLSDYLVASNGILSPQLAGEVRLLDSRPDEQERCITMKASSIAL--- 805632

Query: 57     APAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGE 116
                 H   G+      VD PGH      +    ++ D  +++VD   G   QT+   I+ +
Sbjct: 805631 --HHAYAGKTHVLNLVDSPGHIDFSCEVSTAMRLCDGAVVIVDVVDGVTQQTSS--ILRQ 805464

Query: 117    LLQKKL--IVVINKIDVYPENQRASKLEK-LRLR 147
                Q+ L   +V+NKID+    Q+ +  E  LRLR
Sbjct: 805463 TYQEGLSMCLVLNKIDLLVTTQQYTAEEAYLRLR 805362


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
 Frame = +2

Query: 8      GLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAHLPQGEQL 67
               ++GHV+ GKT L  AL      A    +     R  T+               P  +  
Sbjct: 475244 AVMGHVNHGKTALLDALQGSRIGAEEPHHITQSVRAFTMPR-------------PGADND 475384

Query: 68     QFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQKKLIVVIN 127
               FTF+D PGH   + T      + D++ LV+   +G ++QT E + +   + K +IVV+N
Sbjct: 475385 LFTFIDTPGHRIFVETRFHVQLMADVIALVISVAEGIESQTHETIKVALNVDKPVIVVLN 475564

Query: 128    KIDVYPENQRASK-------------LEKLRLRLAKTLEATTFGGQVPICAVSALQGTHI 174
              K+D+  +   A K             L+   L+  K +EA         C+    +G  +
Sbjct: 475565 KLDLLSDALTAEKAVRRILAELYSIGLDVHLLQREKDVEALATKASTACCSS---RGRSL 475735

Query: 175    AELREVLREAYFQPQRNLADPLF 197
               +LR   +  YF P + + DP +
Sbjct: 475736 TDLRP--QAEYFAPMKTV-DPEY 475795


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
 Frame = +3

Query: 9       LLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERG-ITLDLGFSGL----LVDAPAHLPQ 63
               +LGHVD+GKT+L   L  I ST     N Q  E G IT  +G +      LV A A L +
Sbjct: 1235199 VLGHVDTGKTSL---LDRIRST-----NVQGGEAGGITQQIGATFFPRESLVSATAELIK 1235354

Query: 64      GEQLQFTF-----VDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELL 118
                 +          +D PGH S       G+ + D+ +LVVD   G + QT E +    LL
Sbjct: 1235355 KHKCNLNVPGLLVIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTRESI---RLL 1235525

Query: 119     QKK---LIVVINKID 130
               ++K    IV +NK+D
Sbjct: 1235526 REKRCPFIVALNKVD 1235570


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 24/151 (15%)
 Frame = +3

Query: 4      NFNIGLLGHVDSGKTTLA------------KALSSISSTAAFDKNPQSVERGITLDLG-- 49
              +FNI   GHVD+GK+T++            + +  +   A  +   +  E    +D+   
Sbjct: 481503 HFNIVFCGHVDAGKSTISGHLLMEKGLVDQREMEKLRREAEINHR-EGWEYAYVMDVSEE 481679

Query: 50     --FSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKG---- 103
                  G+  +  A   + E+ + T +D PGH + + ++IGGA   D+ +LV+ ++ G    
Sbjct: 481680 ERSKGITRETGAAYFETEKRRVTVLDAPGHKAFVPSMIGGATQADICVLVISSRTGEFET 481859

Query: 104    ---KQTQTAE-CLIIGELLQKKLIVVINKID 130
                 K  QT E  +++     K++I VINK+D
Sbjct: 481860 GFEKGGQTREHAMLVRTCGVKQMICVINKMD 481952



 Score = 32.7 bits (73), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 369    PPHSTLIASKLDM-DVHSTSCRLAFWGRIAWQTHSSKYFQEELPKLRIFKRKQKVGSIQR 427
              PPH      +  M D    S     WGR  W+T+SS++   E+ K R   R    G ++ 
Sbjct: 197837 PPHHRPRLWQFPMHDATRQSREKCVWGRKYWKTNSSEHPMREMEKRRKSCRNGVAGGVEG 197658

Query: 428    VVNSSE 433
                 +SE
Sbjct: 197657 TCRASE 197640


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
 Frame = -3

Query: 6      NIGLLGHVDSGKTT----------LAKALSSISS-TAAFDKNPQSVERGITLDLGFSGLL 54
              NIG+  H+D+GKTT          + K +  + S T   D   +  +RGIT+      L 
Sbjct: 763037 NIGIAAHIDAGKTTTTERMLFYAGVTKRVGDVDSGTTTTDFMKEEADRGITIQSAAVSL- 762861

Query: 55     VDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLII 114
                      +        +D PGH      +    +I+D ++ + DA  G Q Q+   L  
Sbjct: 762860 --------RWRDHGINLIDTPGHVDFTVEVERTMRIVDGVVALFDASAGVQAQSYTVLQQ 762705

Query: 115    GELLQKKLIVVINKIDVYPENQRAS--------KLEKLRLRLAKTLEATTFGGQVPI 163
                     LI  +NK+D Y  +   S        ++E L L++    E  +F G V +
Sbjct: 762704 SRRFNAPLIAFLNKMDKYNADFAMSVNSIRTKLQVEPLLLQIPLHAEDGSFAGVVDV 762534


>LmjF36_01_20050601_V5.2
             [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
 Frame = -2

Query: 6     NIGLLGHVDSGKTTLAKALSSISSTAAF---------DKNPQSVERGITLDLGFSGLLVD 56
             N+ ++ HVD GK+TL+ +L   +              D     + RGIT+      +   
Sbjct: 57194 NMSVIAHVDHGKSTLSDSLVGAAGIIKMEEAGDKRIMDTRADEIARGITIKSTAISMHYH 57015

Query: 57    APAHL-----PQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAEC 111
              P  +               +D PGH      +    ++ D  L+VVD  +G   QT   
Sbjct: 57014 VPKEMIGDLDDDKRDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 56835

Query: 112   LIIGELLQKKLIVVINKID 130
             L      + + +V INK+D
Sbjct: 56834 LRQALTERIRPVVFINKVD 56778



 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
 Frame = -3

Query: 6     NIGLLGHVDSGKTTLAKALSSISSTAAF---------DKNPQSVERGITLDLGFSGLLVD 56
             N+ ++ HVD GK+TL+ +L   +              D     + RGIT+      +   
Sbjct: 60709 NMSVIAHVDHGKSTLSDSLVGAAGIIKMEEAGDKRIMDTRADEIARGITIKSTAISMHYH 60530

Query: 57    APAHL-----PQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAEC 111
              P  +               +D PGH      +    ++ D  L+VVD  +G   QT   
Sbjct: 60529 VPKEMIGDLDDDKRDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 60350

Query: 112   LIIGELLQKKLIVVINKID 130
             L      + + +V INK+D
Sbjct: 60349 LRQALTERIRPVVFINKVD 60293



 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 9/150 (6%)
 Frame = +2

Query: 6      NIGLLGHVDSGKTTLAKALSSISS-TAAFDKNPQSVERGITLDL----GFSGLLVDAPAH 60
              NIG+  H+DSGKTTL++ +   S       +     E G T+D        G+ + + A 
Sbjct: 162734 NIGISAHIDSGKTTLSERILFYSGRIGKIHEVKGGTEVGATMDSMELEKERGITIRSAAT 162913

Query: 61     LPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECLIIGELLQK 120
                + +      +D PGH      +    +++D  +L++ A  G Q+QT   L +   +++
Sbjct: 162914 QCRWKNSTINIIDTPGHVDFTIEVERALRVLDGAILLMCAVGGVQSQT---LTVDRQMKR 163084

Query: 121    ---KLIVVINKIDVYPEN-QRASKLEKLRL 146
                   I  INK+D    N QRA K  + RL
Sbjct: 163085 YGVPRICFINKLDRDNANPQRAVKQAQERL 163174


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
 Frame = -2

Query: 6      NIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGFSGLLVDAPAHLPQGE 65
              N+ + G +  GKT+L + L    S   + K    V+R +TL      ++       P   
Sbjct: 858615 NVVVAGSLHHGKTSLVELLLHERS---YHKRQDEVDREMTLKSHVLTIITGGAELQPTSR 858445

Query: 66     QLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGKQTQTAECL---IIGELLQKKL 122
              Q+  T +D PGH  LI     G ++ D +L  VDA +     +   L   I+ E  Q  +
Sbjct: 858444 QI--TVIDTPGHPDLIGETASGMRLADAVLFCVDAAESLSDHSERLLRHAIVNE--QLPI 858277

Query: 123    IVVINKID 130
              ++VI K+D
Sbjct: 858276 VLVITKVD 858253


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 41.6 bits (96), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 29/197 (14%)
 Frame = +2

Query: 9       LLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGF------------------ 50
               + GHVD+GK+T    L  +    +     Q VER    D                     
Sbjct: 1656428 IAGHVDAGKSTTLGHLLLLLGRVSI----QDVERNEKADRTHHKDSFKYAWLLDQCEEER 1656595

Query: 51      -SGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGK----- 104
                 G+ +D+ +   + E  +   +D PGH   +  +I  A   D  LLVV A   +     
Sbjct: 1656596 RRGVTIDSGSFCFETEHRRVHILDAPGHKDFVLNMISSATQADAALLVVTATNSEFETGL 1656775

Query: 105     -QTQTAECLIIGELLQKKLIVVINKID--VYPENQRASKLEKLRLRLAKTL--EATTFGG 159
                    +  L++  L    ++V +NK+D   Y + +    + +L+L L +T   E    G 
Sbjct: 1656776 HHGTKSHLLVLKTLGVGSIVVAVNKMDAVAYSQERYDYVVRELQLLLKQTRIPEEAIIG- 1656952

Query: 160     QVPICAVSALQGTHIAE 176
                   C +S + G +I +
Sbjct: 1656953 ---FCPISGMTGVNITQ 1656994


>LmjF02_01_20050601_V5.2
             [~/leish/curated/chr2/LmjF02_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 355714

 Score = 33.5 bits (75), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 231   PALGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERGIITQPGYLKPIYAVCLQ 290
             P LG    V  +  FR    SAS+  R   C   F A   +RG+      L  +++ CL+
Sbjct: 28785 PKLGTTTSVVRVSGFRLRYISASLPLRSNACSCSFTASAGDRGVCMMRAVLGSLWSGCLK 28606

Query: 291   FKPIR 295
                +R
Sbjct: 28605 GVAVR 28591


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000086_1.0 # Protein # Glutathione peroxidase 4 (GPx4) #
Drosophila melanogaster # Complete
         (238 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   118   3e-27
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    99   3e-21
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    32   0.35 
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    31   0.88 
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    31   0.89 
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    30   1.6  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    29   2.6  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    29   2.9  
LmjF03_01_20050601_V5.2 [~/leish/curated/chr3/LmjF03_01_20050601...    29   3.2  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    29   3.8  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   4.1  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  118 bits (296), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/163 (40%), Positives = 90/163 (55%), Gaps = 1/163 (0%)
 Frame = -3

Query: 77     KNAASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKXGLTKNNYEKLTDLKEKYGERGL 136
              ++  SIY+F V  +      L ++KG  +L+ N+ASK G TK  YE  T L  KY   G 
Sbjct: 239322 QSTMSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGF 239143

Query: 137    VILNFPCNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTG 196
              ++L FPCNQF  Q P  + E         KA+   +  KV VNG++  PLY YLK    G
Sbjct: 239142 MVLAFPCNQFAGQEPGTEEEVKSFACTRFKAEF-PIMEKVCVNGEHEHPLYHYLKNTCKG 238966

Query: 197    TLGSG-IKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL 238
               LG+  +KWNFT FLV+K+G  + R+AP     +I K +  LL
Sbjct: 238965 ILGTTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 238837



 Score =  118 bits (296), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
 Frame = -1

Query: 80     ASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKXGLTKNNYEKLTDLKEKYGERGLVIL 139
              +SIY+F V  +      L ++KG  +L+ N+ASK G TK  YE  T L  KY   G ++L
Sbjct: 236987 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 140    NFPCNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLG 199
               FPCNQF  Q P  + E         KA+   +  KV VNG++  PLY YLK    G LG
Sbjct: 236807 AFPCNQFAGQEPGTEEEVKSFACTRFKAEF-PIMEKVCVNGEHEHPLYHYLKNTCKGILG 236631

Query: 200    SG-IKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL 238
              +  +KWNFT FLV+K+G  + R+AP     +I K +  LL
Sbjct: 236630 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 236511



 Score =  118 bits (296), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
 Frame = -2

Query: 80     ASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKXGLTKNNYEKLTDLKEKYGERGLVIL 139
              +SIY+F V  +      L ++KG  +L+ N+ASK G TK  YE  T L  KY   G ++L
Sbjct: 234661 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 140    NFPCNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLG 199
               FPCNQF  Q P  + E         KA+   +  KV VNG++  PLY YLK    G LG
Sbjct: 234481 AFPCNQFAGQEPGTEEEVKSFACTRFKAEF-PIMEKVCVNGEHEHPLYHYLKNTCKGILG 234305

Query: 200    SG-IKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL 238
              +  +KWNFT FLV+K+G  + R+AP     +I K +  LL
Sbjct: 234304 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 234185


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
 Frame = -3

Query: 80      ASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKXGLTKNNYEKLTDLKEKYGERGLVIL 139
               AS++ ++    +G  V L+KY G   L+VN+AS+  L   N E L ++++ YG R   +L
Sbjct: 1227181 ASVFTYSAVQ-NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVL 1227005

Query: 140     NFPCNQFGSQMPEADGE-AMVCHLRDSKADIG---EVFAKVDVNGDNAAPLYKYLKAKQT 195
                FPC QF +Q P  + E A  C       D+G    VF +V+V G +A PL++ L+A+Q 
Sbjct: 1227004 AFPCAQFANQEPLNNTEIAQWCE------DLGLLFPVFDRVNVKGSSADPLFQMLRAQQG 1226843

Query: 196     GTLGSGIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLL 238
                 L     WN+TK+L ++ GVP  +  P      + + IE +L
Sbjct: 1226842 APL-----WNYTKYLCDRSGVPRRKLEPGCSMDALRQSIECVL 1226729



 Score = 28.5 bits (62), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = +3

Query: 160     CHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGIKWNFTKFLVNKEGVPIN 219
               CH++  K  +G V+  V V       LY     +          W +T  L+N  G P  
Sbjct: 1026738 CHVQ-HKVHVGYVWEYVSVGVSLGVHLYGLSLCR---------AWGYTACLLNGTGNPRA 1026887

Query: 220     RYAPTTDP 227
               RY PT+ P
Sbjct: 1026888 RYEPTSLP 1026911


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 32.3 bits (72), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +1

Query: 12     QALRCYSMRRTPGPVLELSRGQRQCLRL-C----TIMLPVSCAATP 52
              +ALR    RR P P + L RG   C RL C    T+ LP S  A P
Sbjct: 144529 RALRPVPQRRGPAPDMHLKRGSSPCGRLYCRWHHTLPLPHSLRAPP 144666


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.8 bits (68), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 25      PVLELSRGQRQCLRLCTIMLPVSCAATPMNAIS---SAAQHSTAAA 67
               P L+ +   R C+RL    LP +C  TP++A+     A  H+ +A+
Sbjct: 1936116 PELK*AEAARFCMRLLGTRLPANCLPTPVSALPHALCACSHTLSAS 1936253


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 30.8 bits (68), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = -1

Query: 141    FPCNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNA--APL----YKYLKAKQ 194
              FP N+  +Q P +   ++ C+L  S   +     +VDV+G +A  APL    +K  +  +
Sbjct: 233194 FPSNRPANQ-PVSRALSLCCYLSPSPYSVDVCVMRVDVDGGDARRAPLLQQRWKQKRKNE 233018

Query: 195    TGTLGSGIKWNFTKFLVNKEGVPINRYAPTT 225
                  G G  W    FL  +E    +R +P +
Sbjct: 233017 RTDRGDG-PWPLHLFLDCRENPSFSRRSPPS 232928


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 30.0 bits (66), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 16     CYSMRRTPGPVLELSRGQRQCLRLCTIMLPVSCAATPMNAISSA 59
              C    R  G  L+L+  +R C R      P+SCAATP  + +SA
Sbjct: 622469 CLWQIRDGGASLQLAGLRRACHRGPRAAEPMSCAATPATSRTSA 622600


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 29.3 bits (64), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 18     SMRRTPGPVLELSRGQRQCLRLCT----IMLPVSCAATP 52
              SMRRT G   E+ R    C+R  +    +  P+SC A+P
Sbjct: 276805 SMRRTRGDAWEVGRRGYCCIRRISG*QRVQQPLSCCASP 276689


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 29.3 bits (64), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 33     QRQCLRLCTIMLPVSCAATPMNAISSAAQHSTAAAIDMSANGDYKNAAS 81
              +R+C+ L    L V C+       ++  + +TA+  +M A+G Y +AAS
Sbjct: 438838 RRRCVYLTLDQLLVQCSVRQRRMWAALQRGTTASPQEMLADGGYDDAAS 438692


>LmjF03_01_20050601_V5.2
             [~/leish/curated/chr3/LmjF03_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 384518

 Score = 28.9 bits (63), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +1

Query: 46    VSCAATPMNAISSA-----AQHSTAAAIDMSANGDYKNAASIYEFT 86
             V C ATP+ A +SA        ++ A  D S NG  +N+ S++ F+
Sbjct: 94957 VRCGATPLRASASAPPCCRGHSASRATPDSSPNG*QRNSRSMFAFS 95094


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 28.9 bits (63), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 36      CLRLCTIMLPVSCAATPMNAISSA 59
               C RLC   L V C AT M A++SA
Sbjct: 1462412 CKRLCAQNLHVGCTATNMRALASA 1462341


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.5 bits (62), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 18     SMRRTPGPVLELSRGQRQCLRLCTIMLPVSCAATP 52
              S  +T   VL L R  R C R C +  P+SC  +P
Sbjct: 392847 SRHQTSKRVLRLPR*SRPCSRRCCLPGPLSCHLSP 392951


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000039_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Drosophila melanogaster # Complete
         (246 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    65   5e-11
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    31   0.88 
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    29   3.6  

>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
 Frame = +3

Query: 42     ATFGMGXFWGAESLY--GATRGVLRTTVGYAGG-SSDLPTYRKMGD----HTEVLEIDYD 94
              ATF  G +WG E  +       ++   VG+ GG      TY ++      H EVL++ YD
Sbjct: 570105 ATFAAGCYWGTEHFFVRNFKDSIVSHQVGFMGGIEGKAVTYSEVTKGTTGHAEVLDLMYD 570284

Query: 95     PTVISFKELLDLFWNNHEYGLTTPIKRQ-------YASLILYHDEEQKQVAHA--SKLEE 145
              P  +S+K+LL  F+  H    +T + RQ       Y S I YH+EEQK+ A A  +KL  
Sbjct: 570285 PEKVSYKDLLSFFFRMHN---STTVNRQAGDIGTNYRSAIFYHNEEQKKEAEAYIAKLNG 570455

Query: 146    QERR-----------APEIITTEIASKENFYPAEAYHQKYRLQGHKD 181
               + +           AP I   E A    FYPA   HQ Y L+ H +
Sbjct: 570456 ADEKLHSSFSKAFAGAPCITGLEKAG--TFYPAHEGHQNY-LEKHPN 570587


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.8 bits (68), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -2

Query: 186     LNLSPKLLQTSYVATKLNGYLAGVGGIEQFKAEAETMGLTPTQRQYCYYHVEQNEGQG 243
               + L   LLQ S++ATKL G +A  G ++  + + E  GL P+ R     H   ++  G
Sbjct: 1701567 MQLRQALLQKSHMATKLLGSIANRGDLDS-RLQREVCGLFPSPRDGAAKHAVHSKPSG 1701397


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 28.9 bits (63), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 137    VAHASKLEEQERRAPEIITTEIASKENFYPAEAYHQKYRLQGHKD 181
              VA A    E +RR    +    A+ E  +   ++HQ+  LQGH++
Sbjct: 129761 VAFAYASAEHDRRGCRDVRATGAAAEQLHATPSHHQRAVLQGHRN 129895


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000087_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Drosophila melanogaster # Complete
         (313 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done

 ***** No hits found ******


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Drosophila melanogaster # Complete
         (398 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   289   3e-78
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    32   0.62 

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  289 bits (739), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 170/375 (45%), Positives = 230/375 (61%), Gaps = 16/375 (4%)
 Frame = -3

Query: 19      GDAELRRP-FDPTAHDLDASFRLTRFADLKGXGCKVPQDVLSKLVSALQQDYSAQDQEPQ 77
               G  +L+ P FDP +  L A F+LT +  LKG  CK+PQ    KL++ LQ+  +   Q+  
Sbjct: 2095693 GAVDLKTPRFDPVSLGLPAEFQLTDYTRLKGCSCKLPQ---PKLLALLQELSATPGQK-- 2095529

Query: 78      FLNVAIPRIGIGLDCSVIPLRHG-----GLCLVQTTDFFYPIVDDPYMMGKIACANVLSD 132
                         +G+DCS++PL H       L LV TTDFF+P V DP++ G+I  ANVLSD
Sbjct: 2095528 ---------DVGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSD 2095376

Query: 133     LYAMGVTDCDNMLMLLAVSTKMTEKERDVVIPLIMRGFKDSALEAGTTVTGGQSVVNPWC 192
               LY+MG+ DCD MLMLLA ST+M E ER +    IM+GF + A  A TTVTGGQ+V+NPW 
Sbjct: 2095375 LYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTVMNPWP 2095196

Query: 193     TIGGVASTICQPNEYIVPDNAV-VGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLV-- 249
                IGGVA  +    E + P   +  GD+LVLTKPLG QVAVN  QW+ +P       +   
Sbjct: 2095195 LIGGVAMAVVSEAEMVRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGH 2095016

Query: 250     VSEEDVRKAYHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTLAAHQK---- 305
               +S E++ + Y+ A +SM RLNR  ARLM K+ AHGATD+TGFG+LGHA    A Q     
Sbjct: 2095015 ISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDA 2094836

Query: 306     -KDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQ-AAAYCKDIE 363
                + +  V+  LP+     A +K   + ++LL+G+SAETSGGLL+  P    AAA+C ++ 
Sbjct: 2094835 PRSLCLVLERLPMFKTAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTAAAAFCAELT 2094656

Query: 364     KQE-GYQAWIIGIVE 377
                 + G  +WI+G VE
Sbjct: 2094655 AVDGGCPSWIVGHVE 2094611



 Score = 29.3 bits (64), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -1

Query: 243     WNRIKLVVSEEDVRKA--YHRAMNSMARLNRVAARLMHKYNAHGATDITGFGLLGHAQTL 300
               W ++ + +   D ++A  + R   +++ +N +   L  +YN H    +   G + HA+T+
Sbjct: 1081881 WRKLLVALQSVDAQEAPEHSRRRGALSLVNGLLIILFQRYNTHQCAVL--LGAVEHAETV 1081708

Query: 301     AAHQKKDVSFVIH 313
               A   K+    ++H
Sbjct: 1081707 AESSKEPARSILH 1081669


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 32.3 bits (72), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +2

Query: 215    VGDVLVLTKPLGTQVAVNAHQWIDQPERWNRIKLVVSEEDVRKAYHRAMNSMARLNRVAA 274
              VGD  +LT P    V    HQ +D P R + ++    +  +     R      RL  V+ 
Sbjct: 297833 VGDTCILTSPAALPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVER--KDTLRLPTVSW 298006

Query: 275    RLMHKY 280
               L H Y
Sbjct: 298007 SLTHPY 298024


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   229   3e-60
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    29   5.5  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  229 bits (583), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 139/371 (37%), Positives = 201/371 (54%), Gaps = 14/371 (3%)
 Frame = -3

Query: 2       FQPEKHGLEPDFQLTKFTTHTGXSCKIPQKVLEKYLRGTEIENKNNDGYLIGSGMDCAVI 61
               F P   GL  +FQLT +T   G SCK+PQ  L   L+         D      GMDC+++
Sbjct: 2095666 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSATPGQKD-----VGMDCSIV 2095502

Query: 62      PL----KRHKDYLLIQTVDFFYPMVNDPELLGRIALANVLSDVYAVGVTQFDTVEMIVST 117
               PL     + +   L+ T DFF+P V+DP L G+I  ANVLSD+Y++G+   DT+ M+++ 
Sbjct: 2095501 PLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAA 2095322

Query: 118     STSFSEKERDVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSVCRSEEI 177
               ST   E ER +    +MKGF    +      T +   Q  +NPW +IGG+A +V    E+
Sbjct: 2095321 STEMDEHERLITTREIMKGFAERAR---LATTTVTGGQTVMNPWPLIGGVAMAVVSEAEM 2095151

Query: 178     ILPSNAQ-PGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLS-ECSDADIKETFEIAVK 235
               + P+     GD+LVLTKPLG Q+A++   W L  +  Y++ ++   S  +I+E + +A  
Sbjct: 2095150 VRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYNMATD 2094971

Query: 236     SMTYLNKNAALLMHKYQAHCATDITGFGLLGHANNLAQFQK-----EKVLFQINKLPIIK 290
               SM  LN+  A LM K+ AH ATD+TGFG+LGHANN    Q        +   + +LP+ K
Sbjct: 2094970 SMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDAPRSLCLVLERLPMFK 2094791

Query: 291     NVLKFSTLVGQSTKFRSGRSVETSGGLLICLPA-DAADKFCRDFEEATNGEQKSFQIGHV 349
                 +  S  +    +   G S ETSGGLL+  P+  AA  FC +   A +G   S+ +GHV
Sbjct: 2094790 TAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTAAAAFCAEL-TAVDGGCPSWIVGHV 2094614

Query: 350     T--AANESDAV 358
                  A N  D V
Sbjct: 2094613 EDRATNAVDGV 2094581


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 29.3 bits (64), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 30     QKVLEKYLRGTEIENKNNDGYLIGSGMDCAVIPLKRHK 67
              +  + K L   ++  + ++G ++G G+DC   P  RH+
Sbjct: 525896 RHAMRKRLHLLQVVRRQHNGAVVGDGLDCGPQPAPRHR 525783



 Score = 29.3 bits (64), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 30     QKVLEKYLRGTEIENKNNDGYLIGSGMDCAVIPLKRHK 67
              +  + K L   ++  + ++G ++G G+DC   P  RH+
Sbjct: 505033 RHAMRKRLHLLQVVRRQHNGAVVGDGLDCGPQPAPRHR 504920


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000040_1.0 # Protein # Selenoprotein 15 (Sel15) #
Drosophila melanogaster # Complete
         (178 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    34   0.064
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    29   1.4  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    29   2.3  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    28   3.0  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    28   5.3  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    27   6.6  

>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 33.9 bits (76), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +1

Query: 17     IQAELTAADCRALGFIKAQLMCSSCEKLDDFGL---DTIKPQCKQCCTLDQQPAAQR-TY 72
              I A  TAADC  L F K  + C  C  L  F +   D ++ +C+ CCT ++  AA   TY
Sbjct: 353368 ISAPATAADCLGLRFEKDTVSCRMCA*L--FLVTQKDELRQECESCCTAEKGGAADDVTY 353541

Query: 73     AKAILEV 79
                A +++
Sbjct: 353542 VSARVQL 353562


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 29.3 bits (64), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 26     CRALGFIKAQLMCSSCEKLDDFGLDTIKPQCKQCCTLD 63
              C ++G +  QL+C  C+++  + L  I  +C+ C  ++
Sbjct: 225372 CLSIGMLFGQLVCYGCQRILTYPLGAISCRCRLCSRVN 225259


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 28.9 bits (63), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 52     IKPQCKQCCTLDQQPAAQRTYAKAILE 78
              ++P C+ C TL ++P  +R+  +A+ E
Sbjct: 453086 MRPGCRSCLTLPREPQGRRSGKRAVAE 453006


>LmjF21_01_20050601_V5.2
             [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 28.5 bits (62), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
 Frame = -1

Query: 2     HKCAIF-------LLLALSCQQIQAELTAADCRALGFIKAQLMCSSCEKLDDFGLDTIKP 54
             HKCA+         +  + C+ +   L  A CRALG ++A   C        +G   +  
Sbjct: 47094 HKCALVQHHANMQAVAPVRCKGV-GNLLRAHCRALGMVRAAFECVP------YGAQAVTG 46936

Query: 55    QCKQCCTLDQQPAAQRTYAKAILEVCT 81
               KQ   +      Q ++  A+L  C+
Sbjct: 46935 AVKQRSLVPPNAVQQDSHEAAVLVSCS 46855


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 27.7 bits (60), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 40     SCEKLDDFGLDTIKPQCKQCCTLDQQPAAQRTYAKAILEVCTXKFRA 86
              +CE+LD   ++ + PQ +      QQP+A      AI ++    F A
Sbjct: 510255 ACERLDSSDVEGVPPQRRVASVDRQQPSAYAATGLAIRQISAKLFPA 510115


>LmjF25_01_20050601_V5.2
             [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 27.3 bits (59), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 27    RALGFIKAQLMCSSCEKLD-DFGLDTIKPQCKQCCTLDQQPAAQRTY 72
             R  G +   L+ +  + L  D  +  ++  C  CC+L +QP A   Y
Sbjct: 33325 RDCGLVACSLLIARTQPLSLDVSVCEMRASCFSCCSLRRQPGAS*AY 33185


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000041_1.0 # Protein # Selenoprotein H1 (SelH1) #
Drosophila melanogaster # Complete
         (249 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    30   1.6  
LmjF04_01_20050601_V5.2 [~/leish/curated/chr4/LmjF04_01_20050601...    30   2.4  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    29   3.9  
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    28   9.0  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    28   9.4  

>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 30.0 bits (66), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -2

Query: 25     NAPVLYVEHCRSXRVFRRRAEELHSALRERGLQQLQLQLNA 65
              +A VL+V  C+     +RRA+ + SA+RE GLQ  +L + A
Sbjct: 442094 DACVLHVAVCQ----LQRRADLIRSAVRELGLQLARLTIGA 441984


>LmjF04_01_20050601_V5.2
              [~/leish/curated/chr4/LmjF04_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 472856

 Score = 29.6 bits (65), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = -1

Query: 150    KSESTEEAQENEAPTSTSTSRKSKKEQKSEEEPTQVDSKEAKQSKELVKTKRQPKAQKK 208
              K +   E     APT+   +R+ +  +K++E+  Q ++ EA+  +++ + KRQ  A +K
Sbjct: 317576 KVKKQREMNLMNAPTNEVVARRRQALRKAQEKSRQTETSEARLQRKMSEVKRQEAATRK 317400


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 28.9 bits (63), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
 Frame = +2

Query: 69     PRRGAFELSLSAGGMGKQEQVALWSG----LKRGPPRARKFP-TVEEVYDRIVG--ILGD 121
              PRR          G  +    + W G    L+  PP AR  P    EV    VG  I+ D
Sbjct: 398744 PRRRTSPQRAGELGTPRTALFSSWRGAACALEGQPPDARVMPHRATEVPLMHVGWRIVAD 398923

Query: 122    QQESKEQI-NTQKLSKIDLPGSEALASPKKSESTEEAQENEAPTSTSTSRKSKKEQKSE 179
              Q+    Q+ +T +L    LP S    SP  S++  ++     PTSTST+ ++++ +K+E
Sbjct: 398924 QKRPMPQVPHTHRL----LPCSRT--SPSTSDAFVDSFSVHTPTSTSTTARTERTEKAE 399082


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 27.7 bits (60), Expect = 9.0,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%)
 Frame = +2

Query: 156    EAQENEAPTSTSTSRKSKKEQKSEEEPTQVDSKEAKQSKELVKTKRQPKAQKKQAKASES 215
              E  E +AP+  +  RK  +         +  ++ A  + +L    R+ KAQ+K  +  ES
Sbjct: 867614 ELLERQAPSQRTAKRKHARPPPPTRRA*KEGTQRA--ATQLASDNRK*KAQQKSPQRKES 867787

Query: 216    QEEVAEDKPPSSQKRKRTTRSSTD 239
                      PP  +KR  TT   T+
Sbjct: 867788 MLLRLWRSPPDLRKRSSTTSPHTN 867859


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 27.7 bits (60), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 28     VLYVEHCRSXRVFRRRAEEL-HSALRERGLQQLQLQLNAL 66
              +L+ EH R   + RRRA     S L+ R L +L+L LN+ 
Sbjct: 318287 LLFAEHVRGRAILRRRAGCFPKSCLQSRQLWRLELPLNSF 318406


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000042_1.0 # Protein # Selenoprotein H2 (SelH2) #
Drosophila melanogaster # Complete
         (146 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    28   3.0  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    27   7.4  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    26   7.8  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    26   7.9  

>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 27.7 bits (60), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 92     ASKVPHVDDILTPVCFALKLRDPHKESHRRML 123
              AS+V H+ D++ PV  A    D H+ +H+R L
Sbjct: 412151 ASEVAHIGDVVAPVQRASMRNDAHQLTHQRWL 412056



 Score = 27.7 bits (60), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%)
 Frame = -2

Query: 31      HLHSSLAEALRAIQPRVKLQLRINDKGPPEDGSFEVAIAPQPTDDSTARQSVWTGLRRMP 90
               H H   A     + PR  L L + D     D S E    P+P+   + R + W   R   
Sbjct: 1039712 HRHVRCAHVSDYLWPRPFLLLAVVDAELTADESVEAGAGPEPSARRSKRSARWPHRRSPG 1039533

Query: 91      SASKVPHVDDILTP 104
                 + VP +   L P
Sbjct: 1039532 VPADVPPLQRSLRP 1039491


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 26.6 bits (57), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 92     ASKVPHVDDILTPVCFALKLRDPHKESHRRMLTNLRHNE 130
              A+ + HV   L+P+C A      H ++       LRHNE
Sbjct: 121272 ATSLLHVCSPLSPLCTASHAHHKHADTRTFFFRTLRHNE 121156


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 26.2 bits (56), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 27     KRALHLHSSLAEALRAIQPRVKLQLRINDKGPPEDGSFEVAIAPQPTDDSTARQSV 82
              +   H+H+S      A  P+V  ++ +  + PP+  +  +  A  P ++ TA +SV
Sbjct: 857527 RSGTHVHASEGRFYDACMPKVGGEVPVPTRTPPQHLNDTLNTASPPLNNDTASRSV 857694


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 26.2 bits (56), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 8      DPLQPVLYIDHCRYXQTYRKRALHLHSSLAEALRAIQPRVKLQL 51
              D +     ID     +TY   +LH H+     LR ++P V++ +
Sbjct: 159536 DDMSECTVIDPLNCSRTYHFTSLHFHAMPMHQLRTLRPEVEMHM 159405


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000043_1.0 # Protein # Selenoprotein H3 (SelH3) #
Drosophila melanogaster # Complete
         (143 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done

 ***** No hits found ******


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000088_1.0 # Protein # Selenoprotein I (SelI) # Drosophila
melanogaster # Complete
         (414 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   120   2e-27
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    52   8e-07

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  120 bits (301), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 114/410 (27%), Positives = 179/410 (43%), Gaps = 23/410 (5%)
 Frame = -3

Query: 6       YLSEAHLRGFERYKYSSIDTSFLSVYVMHPFWNYCVKFVPKWLAPNVLTFVGFLMTVVNF 65
               Y+  A+L    +YKYSS D S +S YV+  +WN+ V  VP  +APN +TF GFL+ + + 
Sbjct: 2267416 YIPPAYLPNLRKYKYSSTDLSIVSRYVLQRYWNFVVNLVPMTIAPNCITFTGFLIGMSST 2267237

Query: 66      ILIAYYDWGFEAANSETGNTVPAWVWTVAAINILIYYNLDGMDGKQARRTGTSGPLGELF 125
                L+ YY + FE          P+W    AA  +  Y  LD +DGKQARRTGT  PLGELF
Sbjct: 2267236 ALLLYY-YFFEEG------VYPSWCLYYAAFALFAYQTLDAIDGKQARRTGTGSPLGELF 2267078

Query: 126     DHGLDSYSAALIPI------YLFSL--FGTHDLPPIRMFFVIWNVFL--NFYLTHVEKYN 175
               DHG D++   L+ +      Y+ S+  F    +  + +F VIW  F    F L +V    
Sbjct: 2267077 DHGCDAFLTPLVLLNVSLATYMTSVERFWLSTISSMSLFTVIWEQFSTGTFDLGYVNGPA 2266898

Query: 176     TG-----VMFLPWG-YDFTMWGVSGMLFVATVFGPEMYRF--SIYGFTMANMFEFVLIGS 227
                G     V+F+  G Y  ++W +S +      + P +  F     G         VL   
Sbjct: 2266897 EGIILNCVLFIVSGVYGKSIWDISAVGPYDVAYPPVLSPFFPGCSGTVHIESVRSVLFIL 2266718

Query: 228     GMVSSHPIIARNIYLSYKNKT---GKMRPMWEMLRPFFAFVWLFVITVVWSFFSRNDVIN 284
                ++S    I  N+  +    T    K+ PM   L P      L    VV  F    ++  
Sbjct: 2266717 FLISCPFTILVNVVHTVLRPTVHASKVTPMLA-LAPIITMTAL----VVHVFVVFPNLTV 2266553

Query: 285     KEPRILWILYGTIFSNIACRLIVAQMSDTRCDAFNVLMWPLAATVGVCCFPYY--QQVFD 342
               + P  + I YG + S    RL ++++S       N  +      +      +Y       
Sbjct: 2266552 RFPFAMEISYGLLMSITVTRLTLSRLSAMPYRTVNWHIVLFFLALAAASAMHYAGDASVS 2266373

Query: 343     SDLTSDTERWILYGLTIFSTLAHWHYGYGVVSEMCDHFHIRCFKVRKSSS 392
                D+      W L GL++F+ + + H      +++  +  I    ++ + S
Sbjct: 2266372 HDVVETVLGWTLTGLSVFAAMQYGHMILSAFTQIARYLSISIMTIKPNKS 2266223


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 30/156 (19%)
 Frame = +2

Query: 22     SIDTSFLSVYVMHPFWNYCVKFVPKWLAPNVLTFVGFLMTV-VNFILIAYYDWGFEAANS 80
              S D S ++ Y+  PF++Y V+F P+   PN +T VG   T+  + +L++    G +  + 
Sbjct: 333140 SADPSIMAEYLFFPFYDYVVQFYPQSWVPNKVTLVGIFSTISASVLLLSSMPAGLQFQSG 333319

Query: 81     ETGNTVPAWVWTVAAI--------------------NIL---------IYYNLDGMDGKQ 111
                   +PA +   AA+                    N++         +Y   D  DG+ 
Sbjct: 333320 RM-QLLPASLVEDAAMLQMPPLSPTQMTPILSFISPNLMLILCGSLNVLYCVADNTDGRL 333496

Query: 112    ARRTGTSGPLGELFDHGLDSYSAALIPIYLFSLFGT 147
              ARR   +  +GE  DHGLD  ++ L    +F+L G+
Sbjct: 333497 ARRDKKTSVIGEYLDHGLDCVTSLLSTCCVFALVGS 333604


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...    29   0.44 
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    28   1.4  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    27   1.8  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    27   2.7  
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    27   3.0  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    27   3.2  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    27   3.4  
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    26   3.7  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    26   4.1  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    26   4.7  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    26   4.8  
LmjF10_01_20050601_V5.2 [~/leish/curated/chr10/LmjF10_01_2005060...    26   5.0  
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    25   6.2  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    25   6.4  
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    25   7.1  
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    25   8.6  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score = 29.3 bits (64), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 43     FTGNNNQANPRRGNGWGGGGGWGGGGGGGGGGGGGRPGSG 82
              F  +++ A+PR G+G     G G   G  GG G  R GSG
Sbjct: 100275 FDASSSPASPRDGSGATQQHGGGSNRGNTGGSGSQRMGSG 100394


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 27.7 bits (60), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 16/46 (34%)
 Frame = +1

Query: 79      PGSGSGGLRPNRRIGRIQ----------------PTMSCNMPAGGG 108
               PG GSG  RP+  +   Q                P M C++ A GG
Sbjct: 1189708 PGHGSGAFRPDEDLNESQHPWMRPGWRLGVSLDIPHMQCDVAAAGG 1189845


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 27.3 bits (59), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 10     VWEKRPWDWRRIVEL-FVGIWFAIKQLFLT 38
              V  +RP    R + L F+ +WFA+ +LFLT
Sbjct: 301139 VCRRRPRTPERSLSLVFIMLWFAVMKLFLT 301050


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 40      LAPFTGNNNQANPRRGNGWGGGGGWGGGGGGGGG 73
               +A  +G  +Q+  R+  G   GGG+G  G   GG
Sbjct: 1809153 VAILSGAGSQSTKRQMLGANSGGGFGANGASAGG 1809254



 Score = 25.4 bits (54), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 14     RPWDWRRIVELFVGIWFAIKQLFLTFLAPFTGNNNQANPRR 54
              RPW W+R+    V I   +    +T L+PF     ++ PR+
Sbjct: 462284 RPWGWQRLRIPSVDICVCVSAAPVTLLSPFA---VESQPRK 462171


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 26.6 bits (57), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 76     GGRPGSGSGGLRPNRRIGRIQPTMSCNMPAGGGXG 110
              G RP + SGG  PNR        + C + +G G G
Sbjct: 197097 GDRPSTRSGGCEPNR-------MLCCGVRSGVGAG 197014


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 26.6 bits (57), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 54     RGNGWGGGGGWGGGGGGGGGGGGGRPGSGSGGLRP 88
              R +G G     GGG G     GGG  G  SG  RP
Sbjct: 599491 R*HGRGAAKEIGGGEGDAPRRGGGAQGKASGDARP 599595


>LmjF30_01_20050601_V5.2
               [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 1       MVYIDHNGRVWEKRPWDWRR 20
               ++ I HNG   E+  W+WR+
Sbjct: 1339223 VILISHNGLASEQAGWEWRK 1339282



 Score = 26.2 bits (56), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 72     GGGGGGRPGSGSGGLRPNRRIGRI 95
              G G GG+P S      P +R+GR+
Sbjct: 621389 GRGDGGKPRSMGDAAPPQKRVGRV 621460


>LmjF17_01_20050601_V5.2
             [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 26.2 bits (56), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 13    KRPWDWRRIVELFVGIWFAIKQLFLTFLAPFTGNNNQANPRRGNGWGGGGGW 64
             +RPWD +R+V     +W+  +   +T  AP T +  ++   R       G W
Sbjct: 16171 QRPWDMKRLVSKHSHVWYINET--VTEYAPTTPSKRKSRRTRKATTATMGRW 16320


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 26.2 bits (56), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 53     RRGNGWGGGGGWGGGGGGGGGGGGGRPGS 81
              RRGN W   GGWG    G       R GS
Sbjct: 287311 RRGNAWVCSGGWGASAFGSLVWWQSRSGS 287225


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 25.8 bits (55), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 74     GGGGRPGSGSGGLRPNRRIGRIQPTMSCNMPAG 106
              GG GR G+G GGLRP   +  +     C M +G
Sbjct: 453076 GGVGRVGAGKGGLRPLHSVADV-----CRMRSG 453159


>LmjF29_01_20050601_V5.2
               [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 25.8 bits (55), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 70      GGGGGGGGRPGSGSGGLRP 88
                GG  GGGRP SG G L+P
Sbjct: 1066542 AGGVQGGGRPASGHGPLKP 1066598


>LmjF10_01_20050601_V5.2
              [~/leish/curated/chr10/LmjF10_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 570864

 Score = 25.8 bits (55), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 54     RGNGWGGGGGWGGGGG--GGGGGGGGRP 79
              R   W G G W GGG    G  GG GRP
Sbjct: 163695 RDPQWRGVGSWRGGGWRVTGEEGGRGRP 163612



 Score = 25.4 bits (54), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 73     GGGGGRPGSGSGGLRPNRRIGRIQPTMSCNMPA 105
              GG G RP S S  +RP   +  +QP  + ++PA
Sbjct: 458032 GGEGVRPPSPSTSIRPLNAMTHVQPHPTPSLPA 457934


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 25.4 bits (54), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 64     WGGGGGGGGGGGGGRPGSGSGGLRPN 89
              W G G  GGG     P  G+G LRP+
Sbjct: 200124 WPGVGRSGGGTAAHHPPPGAGALRPD 200201


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 25.4 bits (54), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 42     PFTGNNNQANPRRGNGWGGGGGWGGGGG 69
              PFTG ++   P   + W  G    GGGG
Sbjct: 997113 PFTGPDDPPPPLSFSFWAAGAPLQGGGG 997030


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 25.4 bits (54), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 71     GGGGGGGRPGSGSGGLRPNRR 91
              G G GG RPGS  GG++P  R
Sbjct: 182912 GRGTGGARPGSRWGGVKPKPR 182850


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 25.0 bits (53), Expect = 8.6,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 59     GGGGGWGGGGGGGGGGGGGRPGSGSGG 85
              GGGG W  G GGG  G  G   + S G
Sbjct: 375072 GGGGRWVRGEGGGAKGPAGERRALSTG 374992


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000045_1.0 # Protein # Selenoprotein K2 (SelK2) #
Drosophila melanogaster # Complete
         (118 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    35   0.013
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    31   0.14 
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    29   0.56 
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    29   0.74 
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    28   1.4  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    27   3.7  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    26   5.3  
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    26   7.0  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    25   8.1  

>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 34.7 bits (78), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = -2

Query: 64     WGGGGGGGGGGGGGGGGGGGGGGGSGYRGGGLRPNRRIGRIPPPSQSCNA 113
              W G     G G   G   G G  G   R   + P     R PPPS SC +
Sbjct: 275505 WTGKRADRGWGAAQGAKEGKGRRGEAMRTANISPVAHCARAPPPSASCQS 275356



 Score = 33.1 bits (74), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = -1

Query: 64     WGGGGGGGGGGGGGGGGGGGGGGGSGYRGGGLRPNRRIGRIPPPSQSCNA 113
              W G     G G   G   G G  G   R   + P     R PPPS SC +
Sbjct: 279424 WTGKRADRGWGAAQGAKEGKGRRGEAMRTANISPVAHCARAPPPSASCQS 279275



 Score = 29.6 bits (65), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 17     DLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNGDNSRRGNGW 59
              + RR    FV      + +LAS LSP  G+ ++G  +RR   W
Sbjct: 175583 ETRRSFIEFVAQGCPHRSMLASTLSPPVGSVADGRTTRRNTSW 175711



 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +1

Query: 17     DLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNGDNSRRGNGWGSSSWGG 66
              DL RV+  +V   FA + L    LS   G+   G   RRGN     S+GG
Sbjct: 537334 DLWRVVKAYVQATFAEEALK---LSRARGSAGGGPPRRRGNAETGDSYGG 537474


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 31.2 bits (69), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 97     PNRRIGRIPPPSQSCNAGGCXG 118
              P R +  IPPPSQ+ N  GC G
Sbjct: 398280 PLRLVSSIPPPSQAPNMSGCGG 398215



 Score = 28.9 bits (63), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 89     GYRGGGLRPNRRIGRIPPPSQS 110
              G RGGG  P RR+ R P P  S
Sbjct: 409677 GGRGGGRMPQRRVVRTPVPRHS 409612


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 29.3 bits (64), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 17     DLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNGDNSRRGNGW 59
              + RR    FV      + +LAS LSP  G+ ++G  +RR   W
Sbjct: 194654 ETRRSFIEFVAQGCPHRSMLASTLSPPVGSVADGRTTRRNTSW 194526


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 28.9 bits (63), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 17      DLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNGDNSRRGNGW 59
               + RR    FV      + +LAS LSP  G+ ++G  +RR   W
Sbjct: 2513932 ETRRSFIEFVAQGCPHRSMLASTLSPPVGSVADGRTTRRNTSW 2514060



 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 93      GGLRPNRRIGRIPPPSQSCNA 113
               GGL P     R P PSQ C+A
Sbjct: 2484412 GGLHPRHNTRRQPSPSQRCHA 2484474


>LmjF33_01_20050601_V5.2
              [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = +3

Query: 52     NSRRGNGWGSSSWGGGGGGGGGGGGGGGGGGGGGGGSGYRGGGLRPNRRIGRIPPP 107
              +SRR N   +S  G  G G G       G   G  GSG RG G+ P+  +G   PP
Sbjct: 329433 SSRRTN---ASENGTTGNGDGVSISTPRGRAAGEAGSGARGTGMSPSGAMGGAAPP 329591



 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 17     DLRRVLDTFVGIWFAVKQLLASFLSPFTGNDSNGDNSRRGNGW 59
              + RR    FV      + +LAS LSP  G+ ++G  +RR   W
Sbjct: 982015 ETRRSFIEFVAQGCPHRSMLASTLSPPVGSVADGRTTRRNTSW 981887


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 91     RGGGLRPNRRIGRIPPPSQ 109
              RG  L PNRRI   PPP +
Sbjct: 921170 RGSCLSPNRRIAPPPPPQE 921114


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 26.2 bits (56), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 96     RPNRRIGRIPPPSQSCNA 113
              RP RR   +P PSQ C+A
Sbjct: 509536 RPRRRCSAMPRPSQRCSA 509589


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 25.8 bits (55), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 81     GGGGGGGSGYRGGGLRPNRRIGRIPPP 107
              GGGG      RG G++ +R     PPP
Sbjct: 491758 GGGGNSNRFARGSGVQASRSAAPFPPP 491838


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = +1

Query: 47     DSNGDNSRRGNG----WGSSS---WGGGGGGGGGGGGGGGGGGGG 84
              D+ G   R GNG    +G+S+   WGG G G   G    G  GGG
Sbjct: 281479 DAGGVPGRHGNGEDGAYGASAAGIWGGDGSGDANGQWSSGPFGGG 281613


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) #
Drosophila melanogaster # Complete
         (197 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    79   2e-15
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    29   2.0  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    28   4.6  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    28   5.3  

>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
 Frame = +3

Query: 10      VNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGC 69
               ++ EE R+ LT  +Y + +E GT+ P  G Y+  +++G Y C  C   L+ S  K+  GC
Sbjct: 1031730 MSDEEWRRILTAQEYHILREKGTD-PVGGKYDDVFDEGEYVCAGCKTPLYLSSMKFACGC 1031906

Query: 70      GWPAFNDVLDKG-KVTLHRDASIPGMVRTEVRCSRCSAHMGHVFDDG---PPPKHRRFCI 125
               GWP F D + K  +    RD       R E+ C+ C++H+GHVF       PP + R C+
Sbjct: 1031907 GWPGFYDCIPKRVREQPDRDGR-----RVEIVCNVCNSHLGHVFRGEGFRNPPPNERHCV 1032071

Query: 126     NSASIDF 132
               NS SI F
Sbjct: 1032072 NSTSIIF 1032092


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 29.3 bits (64), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 99     VRCSRCSAHMGHVFDDGPPPKHRRF 123
              VRC   S H+  +F   PPP H RF
Sbjct: 954436 VRCLPLSPHLPVLFSKPPPPSHHRF 954362



 Score = 27.7 bits (60), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 96     RTEVRC-SRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKKRIRTE 140
              R+ VRC SR SA +   F D P P H   C ++AS     +R+R+E
Sbjct: 864510 RSWVRCHSRSSATL--TFSDAPLPDHSDVCTSTAST--FSQRVRSE 864635


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +2

Query: 47     GVYQCIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSA 106
              G+Y C+       +++ +   G GW A  D  DKGK  +  D S+  M        RCS 
Sbjct: 185525 GLYSCLSN-----AADERGQRGIGWAA--DARDKGKQHVSGDPSMTTMTEAPDEALRCSQ 185683

Query: 107    HMG 109
               +G
Sbjct: 185684 GVG 185692


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 27.7 bits (60), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = -1

Query: 117    PPKH------RRFCINSASIDFVKKRIRTEVRCARCNAHMGHVFEDGPKPTRKR 164
              PP+H      R +  + + +D    R+ +  R A CN    H   D  KPTR+R
Sbjct: 751829 PPRHLSGCLLRSYLTSLSIVDLFHSRM-SRCRAAHCNVSRAHEHTDTHKPTRQR 751671


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000046_1.0 # Protein # Selenoprotein T (SelT) # Drosophila
melanogaster # Complete
         (198 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    49   3e-06
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    27   9.2  

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
 Frame = +3

Query: 44     MTFLYCYSXGYRKAFEDYVGLLGEKYP---QIQVNGGNYDPPGLNYYLSKMIFALKIIII 100
              +  LYC   GY K FED    L    P   ++++ GG Y  P      +K + +   +  
Sbjct: 510333 LEVLYCTG*GYAKYFEDMKQQLQHTLPNAQEVRIVGGTYPTPPARALAAK-VCSTAFLAS 510509

Query: 101    VSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVP 160
              + V  A     FL     ++ +  +   I A     FL NM+   L  +GAFE++L+   
Sbjct: 510510 LGVALAGQQLVFLPPTVLNFIAQQRGMLIGAG----FLLNMIGGALGQTGAFEVSLDGEL 510677

Query: 161    VWSKLQTGRFPSPEVLFQII 180
              ++SKLQ G  P+   + +I+
Sbjct: 510678 IFSKLQAGAVPAVAEIRRIV 510737



 Score = 28.1 bits (61), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 99     IIVSVVSAVSPFTFLGLNTPSWWSH 123
              ++ S VSA SP   L L  P WW+H
Sbjct: 692106 LVTSTVSAASPR--LPLELPPWWTH 692038


>LmjF33_01_20050601_V5.2
              [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 26.9 bits (58), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 10     ALLVLCLCAGYALVFAEGEKEIPVTKFGQNIAPTMTFLYCYSXGYR 55
              + +++CLCAGY   F       P+    +   PT TF  C     R
Sbjct: 809841 SYILICLCAGYPFPF---HSVFPLVCSRRRSTPTHTFFLCVCVSQR 809713


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000090_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Drosophila melanogaster # Complete
         (596 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   219   4e-57
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   140   3e-33
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...   105   1e-22
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    53   8e-07
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    35   0.17 
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    34   0.32 
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    33   0.75 
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    32   1.2  
LmjF10_01_20050601_V5.2 [~/leish/curated/chr10/LmjF10_01_2005060...    32   1.3  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    32   1.8  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    31   3.5  
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    30   5.2  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    29   8.5  
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    29   9.0  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  219 bits (558), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 249/504 (49%), Gaps = 18/504 (3%)
 Frame = +1

Query: 94     DRAAMYAQP----VRKMSTKGGSYDYDLIVIGGGSAGLACA-KEAVLNGARVACLDFVKP 148
              +RAA  + P    + + S +  S  YDL+V+G GS GL      A     +VA +D V+ 
Sbjct: 105604 NRAASPSPPPLAKILRFSQRLMSRAYDLVVLGAGSGGLEAGWNAAATYKKKVAVVD-VQA 105780

Query: 149    TPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVD-EKIKPDWHKLVQS 207
              T        +GGTCVNVGC+PKKLM   +   + + E+  +GW ++ E + P+W  L+ +
Sbjct: 105781 THGPPFFAALGGTCVNVGCVPKKLMVTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAA 105960

Query: 208    VQNHIKSVNWVTRVDLRDKK-VEYINGLGSFVDSHTLLAKLKSGE------RTITAQTFV 260
                  +  +N   +    D + + +  G G+  D+HT+L + KS +       T+  +  +
Sbjct: 105961 KNKVVNGINESYKSMFADTEGLSFHMGFGALQDAHTVLVR-KSEDPNSDVLETLDTEYIL 106137

Query: 261    IAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGL----GY 316
              IA G  P    +PG  E+ ITS++ F L+  P + L VG GYI +E AG   G     GY
Sbjct: 106138 IATGSWPTRLGVPGD-EFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGY 106314

Query: 317    EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETG 376
                      ++LRGFD ++ + +   +   GI       P  + K +DG       +V   
Sbjct: 106315 VDLCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGS-----NHVHFN 106479

Query: 377    EEAEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKD-KIPVDSQEATNVANIYAVGDIIYG 435
              +  E+ YD V+ AIGR      L L  AGV   K+  + VD+   T+V NIYA+GD+   
Sbjct: 106480 DGTEEDYDQVMLAIGRVPRSQTLQLDKAGVQTAKNGAVQVDAYSKTSVDNIYAIGDVT-N 106656

Query: 436    KPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADE 495
              +  LTPVA+  G   A  ++GG  +  D+  VA  VF+       G++EE+A K    + 
Sbjct: 106657 RVMLTPVAINEGAAFAETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNH--ET 106830

Query: 496    IEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKS 555
              + V+   + P    I     +   ++ + ++   + V G+H +G  A E+IQ     +K 
Sbjct: 106831 VAVYESCFTPLMHNISGSKHKEFMIRIITDQPSGE-VLGVHMLGDSAPEIIQSVGICMKM 107007

Query: 556    GLTINTLINTVGIHPTTAEEFTRL 579
              G  I+   NT+G+HPT+AEE   +
Sbjct: 107008 GAKISDFHNTIGVHPTSAEELCSM 107079


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  140 bits (353), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 138/501 (27%), Positives = 219/501 (43%), Gaps = 12/501 (2%)
 Frame = +1

Query: 86      PPFQHPHCDRAAMYAQPVRKMSTKGGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDF 145
               P F H      +M+ + +  +++      YD+ VIGGG  G   A +A   G + AC++ 
Sbjct: 1324387 PHFTHTQA-HTSMFRRNIAHLAS------YDVTVIGGGPGGYVAAIKAAQLGLKTACIE- 1324542

Query: 146     VKPTPTLGTKWGVGGTCVNVGCIPKK-LMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKL 204
                        +  +GGTC+NVGCIP K L+H   L  +A    A YG    E +  D   +
Sbjct: 1324543 --------KRGALGGTCLNVGCIPSKALLHATHLYHDAHANFAQYGLRGGENVTMDVSAM 1324698

Query: 205     VQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAK-LKSGERTITAQTFVIAV 263
                      +K++        +  KV Y  G GSFV+ +T+  K L   E T+ ++  ++A 
Sbjct: 1324699 QAQKGKGVKALTGGVEYLFKKNKVTYYKGEGSFVNPNTIKVKGLDGKEETLESKKTIVAT 1324878

Query: 264     GGRP-RYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM- 321
               G  P   P +P   +  ++S     LD  P K +VVG G IGLE       LG E TV+ 
Sbjct: 1324879 GSEPTELPFLPFDEKVVMSSTGALDLDHVPKKMIVVGGGVIGLELGSVWARLGAEVTVVE 1325058

Query: 322     --VRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEA 379
                  R       D   A L  A ++   +  +  T  +S    ++G  +      + G+  
Sbjct: 1325059 FASRCAATTDADVSKA-LTDALVKHEKMKIMTNTKVVS--GTNNGSSVTIEVEDKDGKHQ 1325229

Query: 380     EDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKPEL 439
                   D +L ++GR+     LN     + +++  I ++    TNV N+YA+GD++   P L
Sbjct: 1325230 TLEADALLCSVGRRPHTTGLNAEAINLQMERGFICINDHFETNVPNVYAIGDVVNKGPML 1325409

Query: 440     TPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVF 499
                  A   G   A  L  G    ++Y  +   ++T  E A VG +EE  VK+ G D     
Sbjct: 1325410 AHKAEEEGVACAEIL-AGKPGHVNYSVIPGVIYTNPEVAQVGETEEQ-VKKRGID----- 1325568

Query: 500     HGYYKPTEFFIPQKS------VRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAAL 553
                  YK  +F     S          ++K V ++  D R+ G+  +   AGE+I     A+
Sbjct: 1325569 ---YKVGKFPFSANSRAKAVGTEDGFVKVVTDKKTD-RILGVQIVCTAAGEMIAEPTLAM 1325736

Query: 554     KSGLTINTLINTVGIHPTTAE 574
               + G +   L  T   HPT +E
Sbjct: 1325737 EYGASSEDLGRTCHAHPTMSE 1325799


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 12/385 (3%)
 Frame = -2

Query: 204    LVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSG-ERTITAQTFVIA 262
              L++++ N  ++    T   L +  +E ++GLGSF   +++    K G E T+ A  FVIA
Sbjct: 818317 LIKAITNAAETRETQTLEVLANAHIEVLSGLGSFKTPNSVAVTKKDGTEETVEADYFVIA 818138

Query: 263    VGGRPRYPDIPGAVEYG---ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPT 319
               G  PR P  P AV  G    TSDD+  +   P   +++GAG IG E A      G    
Sbjct: 818137 TGAHPR-PH-PTAVADGKVVFTSDDIM-MQPLPKSIVIIGAGVIGCEFASIFANFGVTQV 817967

Query: 320    VMVRSI--VLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGE 377
               ++     +L   D+ +A  V   +E++G+ F   +  +     +DGK     ++V    
Sbjct: 817966 NIIEKSGRILPMEDEDIALFVQTLLEQKGVCFHHHSA-MESSSINDGKFHYTLRDVRDNS 817790

Query: 378    EAEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNV---ANIYAVGDIIY 434
                + V D+ L +IGR   +  LNL   G+TV+ ++I  D  E   +    +IYA GD   
Sbjct: 817789 LHQHVTDSALVSIGRVPAISKLNLEAIGITVKGNRI--DRDEFLRIEPHKHIYACGDTC- 817619

Query: 435    GKPELTPVAVLAGRLLARRLYGGSTQ---RMDYKDVATTVFTPLEYACVGLSEEDAVKQF 491
               +  L  VA L GR     +Y    +   ++   +++T +F   E A VGL+E+   K  
Sbjct: 817618 TRVALVNVAELEGRACIDHMYTPYPEEQLKLKLDNLSTIMFLDQEVAAVGLNEQQCQKMS 817439

Query: 492    GADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAA 551
               + ++  +   Y+     +   + R  ++K V       +V G+  +GP A  +I+  + 
Sbjct: 817438 ISYKMARYS--YEYVGRALAMGNTR-GFIKLVVTNDKKMQVLGVRAVGPHASSIIELASL 817268

Query: 552    ALKSGLTINTLINTVGIHPTTAEEF 576
              A+ +  +   L N   ++P   + F
Sbjct: 817267 AIHNRDSAYDLRNLHAVYPAITQGF 817193


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 181/447 (40%), Gaps = 28/447 (6%)
 Frame = -2

Query: 158     VGGTCVNVGCIPKKLMHQASLLGEAVHEAAA---YGWNVDEKIKPDWHKLVQSVQNHIKS 214
               +GG  +  G +  K M + S +   +   AA   YG ++D  ++ D  K+ QS++   + 
Sbjct: 1282759 LGGNDLWDGALQSKTMWECSAIMAKMRGDAAMRLYGESLDRYLEIDEVKMRQSMEQVSRI 1282580

Query: 215     VNWVTRVDLR-DKKVEYINGLGSFVDSHTLLAKLKSGE--RTITAQTFVIAVGGRPR-YP 270
                    +  L+    VE + G  +F  +H +    K  +  R+ITA  F++A G +PR +P
Sbjct: 1282579 REEQIQAALKASPNVELVLGRATFSSNHEIQCHSKRTKEFRSITADYFIVATGSKPRKHP 1282400

Query: 271     DIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI--VLR 328
                +       +TSD +      P   ++VGAG IG E A  +  LG     ++     +L 
Sbjct: 1282399 YVAADGRLVMTSDHIMRAPL-PKSLVIVGAGVIGCEFASIIGRLGKTKVSIIDKAPHILP 1282223

Query: 329     GFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTV-- 386
                 D  +  ++ + M+  GI     +    ++  ++     K ++         V  TV  
Sbjct: 1282222 REDPDIVRMIESGMDRAGIVVHHNSDLYDMQPWEETVEEAKARHPADPAPQSGVQYTVMD 1282043

Query: 387     --------------LWAIGRKGLVDDLNLPNAGVTVQKDKIPVDS-QEATNVANIYAVGD 431
                             L +IGR      L + N  +  +  ++ V+   +     +I+AVGD
Sbjct: 1282042 RTTRKLTTFQVERALISIGRVPDYSRLGIENTTLKTRGSQLHVNEFGQCVGTPHIFAVGD 1281863

Query: 432     IIYGKPELTPVAVLAGRLLARRLYGGSTQRMD--YKDVATTVFTPLEYACVGLSEEDAVK 489
                     +L  +     +L    +YG   + +    + +++  F     A VG +E    +
Sbjct: 1281862 AA-THMQLVSMGEAQAKLAVDYIYGTEPKVVPNLTETMSSVAFLTRAVASVGYNESQC-R 1281689

Query: 490     QFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGF 549
               + G   I   + Y   +       +    ++K +     ++R+ G+  +G  A  ++   
Sbjct: 1281688 EKGIAYIAARYSYEVVSRAVAAANT--KGFVKIICADDPERRILGVRALGMNASTLVDIG 1281515

Query: 550     AAALKSGLTINTLINTVGIHPTTAEEF 576
               A A+++G  +  L   +  +P  ++ F
Sbjct: 1281514 ALAIQNGQGVFDLAGRLTAYPAVSQAF 1281434


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 35.0 bits (79), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -2

Query: 105    KMSTKGGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLD---FVKPTPTLGTKWGVGG 160
              ++S    SYDYD+I++GG  AG   AK     G +V  ++   F KP   +G     GG
Sbjct: 612789 RLSPARTSYDYDVIIVGGSIAGPVLAKALSDQGRKVLMVERTLFTKPDRIVGELLQPGG 612613


>LmjF06_01_20050601_V5.2
             [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 34.3 bits (77), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +3

Query: 29    QNRGSLTTKVPHWISSSLSCAHHTFQRTMNLTGQRGSRDSTGATGGNAPAGSGAGAPPPF 88
             + R S TT++    S S SC          + G RGS  +    G  A  GS   +PPP 
Sbjct: 77139 RQRPSATTQLSLKCSPSRSCRRTQA*VVAAVAGPRGSSLAGVEVGSTARRGSAGRSPPPT 77318

Query: 89    QHP 91
              HP
Sbjct: 77319 GHP 77327


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 32.7 bits (73), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 115    YDLIVIGGGSAGLACAKEAVLNGARVACLD 144
              +DL+VIGGG  GL  A +A   G RVA +D
Sbjct: 164033 FDLLVIGGGLTGLYTAVDAAQRGLRVALVD 164122



 Score = 29.3 bits (64), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 31     RGSLTTKVPHWISSSLSCAHHTFQRTMNLTGQRGSRDSTGATGGNA 76
              +G+ T +V H +S   +C +   ++    TG+R  R   G  GG+A
Sbjct: 276999 KGADTRRVKHVLSVKYTCTYIQARKGQGKTGEREDRGKEGKGGGSA 276862


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 32.3 bits (72), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -3

Query: 79     GSGAGAPPPFQHPHCDRAAMYAQPVRKMSTKGGSYDYDLIVIGGGSA 125
              G G  APPP  HP       ++ PVR+MS      D  + V GGG A
Sbjct: 524103 GGGTAAPPPQSHP-------FSHPVRRMSCA----DERVCVRGGGGA 523996


>LmjF10_01_20050601_V5.2
              [~/leish/curated/chr10/LmjF10_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 570864

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = -3

Query: 50     HHTFQRTMNLTGQRGSRDSTGATGGNAPAGSGA-------GAPPPFQHPH 92
              HH F++  +  G RGSR  +G      PAG  A       GAPPP  H H
Sbjct: 297547 HHDFRKPRDAYGARGSRRVSGGGAFPWPAGGLAGLVGRLRGAPPP-THQH 297401


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 113    YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTP--TLGTKWGVGGTCVN 164
              + YD +V+G G +GL  A     +G  VAC+  + P+   T+  + G+     N
Sbjct: 610734 HTYDCVVVGAGGSGLRAAMGVAASGYDVACISKLYPSRSHTIAAQGGINAALAN 610895



 Score = 30.0 bits (66), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = -3

Query: 34    LTTKVPHWISSSLSCAHHTFQRTMNLTGQRGSRDSTGATGGNAPAGSGAGAPPPFQHPHC 93
             + T V   +SSS+SC +        L G    R   GA G +   G G  +    +H  C
Sbjct: 61737 VNTAVAMCMSSSMSCVYVHCDDCARLNGVTKRRREIGAAGTDVDVGEGIASSTSNRHT-C 61561

Query: 94    DRAAMYAQPVRKMST 108
             +   +   P R MST
Sbjct: 61560 E--CVSGSPTRFMST 61522



 Score = 29.6 bits (65), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 565    TVGIHPTTAEEFTRLAITKRSGLDPTPAS 593
              ++ + P  A  F  L+ T RSG  PTPAS
Sbjct: 570486 SIALSPAAATRFATLSTTSRSGPRPTPAS 570572


>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 30.8 bits (68), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 83      GAPPPFQHPHCDRAAMYAQPVRKMSTKGG--SYDYDLIVIGGGSAGLACAKEAVLNGAR 139
               G P     P+C R   Y +P R  ST+ G  +  +  +++      LACA    L+  R
Sbjct: 1037571 GTPRERGRPNCRRQWRYPRPQRHQSTRAGGMASSHRTLMVNNACLALACAPPTALSCHR 1037747


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 30.0 bits (66), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +1

Query: 43     SSSLSCAHHTFQRTMNLTGQRGS----RDSTGATGGNAPAGSGAGAPPPFQHPHCDR--- 95
              +++LS   H  QRT  L GQRG     R    +   ++ A S   A  P  HPH      
Sbjct: 220381 TNTLSRHVHCRQRTACLVGQRGGERSHRHRYESLRDSSQAVSKPTAAAPHTHPHAPSNVA 220560

Query: 96     AAMYAQPVRKMSTKGG 111
              A    +PVR  + + G
Sbjct: 220561 AVAVTEPVRCAAQRSG 220608


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 29.3 bits (64), Expect = 8.5,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -2

Query: 64     GSRDSTGATGGNAPAGSGAGAPPPFQHPHCDRAAMYAQPV 103
              G R  T + G    AG+G G+PP  Q P  DRAA  A P+
Sbjct: 127969 GGRSGTPSDGCVRVAGTGQGSPPTHQ-PCADRAASAALPL 127853


>LmjF27_01_20050601_V5.2
               [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 29.3 bits (64), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 60      TGQRGSRDSTGATGGNAP-AGSGAGAPPPFQHPHCDRA 96
               TGQ  SR  T     + P  GSGA  PP  + PH  +A
Sbjct: 1108957 TGQMHSRGRTSCELSSRPEVGSGAPPPPSLRKPHARKA 1109070


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000091_1.0 # Protein # Thioredoxin reductase 2 (TR2) #
Drosophila melanogaster # Complete
         (516 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   214   1e-55
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   124   2e-28
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    85   2e-16
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    65   9e-11
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    38   0.019
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    33   0.80 
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    32   1.4  
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    31   2.3  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    31   2.4  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  214 bits (546), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 149/478 (31%), Positives = 235/478 (49%), Gaps = 11/478 (2%)
 Frame = +1

Query: 33     YDLVVLGGGSAGLACAKEAAGCGARVLCFDYVKPTPVGTKW--GIGGTCVNVGCIPKKLM 90
              YDLVVLG GS GL     AA    + +    V+ T  G  +   +GGTCVNVGC+PKKLM
Sbjct: 105679 YDLVVLGAGSGGLEAGWNAAATYKKKVAVVDVQATH-GPPFFAALGGTCVNVGCVPKKLM 105855

Query: 91     HQASLLGEAVHEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKK-VEYV 149
                 +   + + E+  +GW ++  ++ P+W+ L+ +    +  +N   +    D + + + 
Sbjct: 105856 VTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAAKNKVVNGINESYKSMFADTEGLSFH 106035

Query: 150    NSMATFRDSHT--IEYVAMPGAEHRQ-VTSEYVVVAVGGRPRYPDIPGAVELGITSDDIF 206
                    +D+HT  +     P ++  + + +EY+++A G  P    +PG  E  ITS++ F
Sbjct: 106036 MGFGALQDAHTVLVRKSEDPNSDVLETLDTEYILIATGSWPTRLGVPGD-EFCITSNEAF 106212

Query: 207    SYEREPGRTLVVGAGYVGLECACFLKGL----GYEPTVMVRSIVLRGFDRQMSELLAAMM 262
                E  P R L VG GY+ +E A    G     GY        ++LRGFD ++ + L   +
Sbjct: 106213 YLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGYVDLCYRGDLILRGFDTEVRKSLTKQL 106392

Query: 263    TERGIPFLGTTIPKAVERQADGRLLVRYRNTTTQMDGSDVFDTVLWAIGRKGLIEDLNLD 322
                 GI       P  + +  DG   V + N  T+ D    +D V+ AIGR    + L LD
Sbjct: 106393 GANGIRVRTNLNPTKITKNEDGSNHVHF-NDGTEED----YDQVMLAIGRVPRSQTLQLD 106557

Query: 323    AAGVKTHDDKIV-VDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGSTQL 381
               AGV+T  +  V VDA   TSV +I+A+GD+   R  LTPVAI  G   A  +F G  + 
Sbjct: 106558 KAGVQTAKNGAVQVDAYSKTSVDNIYAIGDVT-NRVMLTPVAINEGAAFAETVFGGKPRA 106734

Query: 382    MDYADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLK 441
               D+  VA  VF+       GM+EE A   +  + + V+   + P    I     +   ++
Sbjct: 106735 TDHTKVACAVFSIPPIGTCGMTEEEAA--KNHETVAVYESCFTPLMHNISGSKHKEFMIR 106908

Query: 442    AVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEFTRL 499
               + +    + +LG+H +G  A E+IQ     +K G  +    NT+G+HPT+AEE   +
Sbjct: 106909 IITDQPSGE-VLGVHMLGDSAPEIIQSVGICMKMGAKISDFHNTIGVHPTSAEELCSM 107079


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  124 bits (310), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 125/478 (26%), Positives = 211/478 (44%), Gaps = 16/478 (3%)
 Frame = +1

Query: 33      YDLVVLGGGSAGLACAKEAAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKK-LMH 91
               YD+ V+GGG  G   A +AA  G +  C +         +  +GGTC+NVGCIP K L+H
Sbjct: 1324453 YDVTVIGGGPGGYVAAIKAAQLGLKTACIE--------KRGALGGTCLNVGCIPSKALLH 1324608

Query: 92      QASLLGEAVHEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVNS 151
                  L  +A      YG    + N+  D   +       +K++        +  KV Y   
Sbjct: 1324609 ATHLYHDAHANFAQYGLRGGE-NVTMDVSAMQAQKGKGVKALTGGVEYLFKKNKVTYYKG 1324785

Query: 152     MATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRP-RYPDIPGAVELGITSDDIFSYER 210
                 +F + +TI+   + G E   + S+  +VA G  P   P +P   ++ ++S      + 
Sbjct: 1324786 EGSFVNPNTIKVKGLDGKE-ETLESKKTIVATGSEPTELPFLPFDEKVVMSSTGALDLDH 1324962

Query: 211     EPGRTLVVGAGYVGLECACFLKGLGYEPTVM-VRSIVLRGFDRQMSELLA-AMMTERGIP 268
                P + +VVG G +GLE       LG E TV+   S      D  +S+ L  A++    + 
Sbjct: 1324963 VPKKMIVVGGGVIGLELGSVWARLGAEVTVVEFASRCAATTDADVSKALTDALVKHEKMK 1325142

Query: 269     FLGTTIPKAVERQADGRLLVRYRNTTTQMDGSD------VFDTVLWAIGRKGLIEDLNLD 322
                +  T  K V    +G       + T +++  D        D +L ++GR+     LN +
Sbjct: 1325143 IMTNT--KVVSGTNNG------SSVTIEVEDKDGKHQTLEADALLCSVGRRPHTTGLNAE 1325298

Query: 323     AAGVKTHDDKIVVDAAEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGSTQLM 382
               A  ++     I ++    T+VP+++A+GD++   P L   A   G   A  + AG    +
Sbjct: 1325299 AINLQMERGFICINDHFETNVPNVYAIGDVVNKGPMLAHKAEEEGVACA-EILAGKPGHV 1325475

Query: 383     DYADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQKS------VR 436
               +Y+ +   ++T  E + VG +EE  ++ RG D        YK  +F     S        
Sbjct: 1325476 NYSVIPGVIYTNPEVAQVGETEEQ-VKKRGID--------YKVGKFPFSANSRAKAVGTE 1325628

Query: 437     HCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAE 494
                 ++K V +   D +ILG+  +   AGE+I     A++ G + + L  T   HPT +E
Sbjct: 1325629 DGFVKVVTDKKTD-RILGVQIVCTAAGEMIAEPTLAMEYGASSEDLGRTCHAHPTMSE 1325799



 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +3

Query: 16     RSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKEAAGCGARVLCF 61
              RS+ G  R+AA+R R      VLGGG   L     AAGC     C 
Sbjct: 398010 RSADGVGRVAAAR-RLRESFTVLGGGDGALYARANAAGCRTERSCL 398144


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 172/386 (44%), Gaps = 11/386 (2%)
 Frame = -2

Query: 122    LVRSVQNHIKSVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVV 181
              L++++ N  ++    T   L +  +E ++ + +F+  +++      G E   V ++Y V+
Sbjct: 818317 LIKAITNAAETRETQTLEVLANAHIEVLSGLGSFKTPNSVAVTKKDGTEE-TVEADYFVI 818141

Query: 182    AVGGRPR-YPDIPGAVELGITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTV 240
              A G  PR +P      ++  TSDDI   +  P   +++GAG +G E A      G     
Sbjct: 818140 ATGAHPRPHPTAVADGKVVFTSDDIM-MQPLPKSIVIIGAGVIGCEFASIFANFGVTQVN 817964

Query: 241    MVRSI--VLRGFDRQMSELLAAMMTERGIPFLGTTIPKAVERQA--DGRLLVRYRNTTTQ 296
              ++     +L   D  ++  +  ++ ++G+ F   +   A+E  +  DG+     R+    
Sbjct: 817963 IIEKSGRILPMEDEDIALFVQTLLEQKGVCFHHHS---AMESSSINDGKFHYTLRDVRDN 817793

Query: 297    MDGSDVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDAAEATSV---PHIFAVGDII 353
                   V D+ L +IGR   I  LNL+A G+    ++I  D  E   +    HI+A GD  
Sbjct: 817792 SLHQHVTDSALVSIGRVPAISKLNLEAIGITVKGNRI--DRDEFLRIEPHKHIYACGDTC 817619

Query: 354    YGRPELTPVAILSGRLLARRLFA--GSTQL-MDYADVATTVFTPLEYSCVGMSEETAIEL 410
                R  L  VA L GR     ++      QL +   +++T +F   E + VG++E+   ++
Sbjct: 817618 -TRVALVNVAELEGRACIDHMYTPYPEEQLKLKLDNLSTIMFLDQEVAAVGLNEQQCQKM 817442

Query: 411    RGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFA 470
                +  +  +   Y+     +   + R  ++K V       ++LG+  +GP A  +I+  +
Sbjct: 817441 SISYKMARYS--YEYVGRALAMGNTRG-FIKLVVTNDKKMQVLGVRAVGPHASSIIELAS 817271

Query: 471    AALKTGLTVKTLLNTVGIHPTTAEEF 496
               A+    +   L N   ++P   + F
Sbjct: 817270 LAIHNRDSAYDLRNLHAVYPAITQGF 817193


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 187/467 (40%), Gaps = 32/467 (6%)
 Frame = -2

Query: 62      DYVKPTPVGTKWGIGGTCVNVGCIPKKLMHQASLL-----GEAVH----EAVAYGWNVDD 112
               DY K   V  K  +GG  +  G +  K M + S +     G+A      E++     +D+
Sbjct: 1282798 DYNKRVCVVEKARLGGNDLWDGALQSKTMWECSAIMAKMRGDAAMRLYGESLDRYLEIDE 1282619

Query: 113     TNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHR 172
                 +R    ++ R  +  I++    +        VE V   ATF  +H I+  +    E R
Sbjct: 1282618 VKMRQSMEQVSRIREEQIQAALKAS------PNVELVLGRATFSSNHEIQCHSKRTKEFR 1282457

Query: 173     QVTSEYVVVAVGGRPR-YPDIPGAVELGITSDDIFSYEREPGRTLVVGAGYVGLECACFL 231
                +T++Y +VA G +PR +P +     L +TSD I      P   ++VGAG +G E A  +
Sbjct: 1282456 SITADYFIVATGSKPRKHPYVAADGRLVMTSDHIMRAPL-PKSLVIVGAGVIGCEFASII 1282280

Query: 232     KGLGYEPTVMVRSI--VLRGFDRQMSELLAAMMTERGI------------PFLGTTIPKA 277
                 LG     ++     +L   D  +  ++ + M   GI            P+  T     
Sbjct: 1282279 GRLGKTKVSIIDKAPHILPREDPDIVRMIESGMDRAGIVVHHNSDLYDMQPWEETVEEAK 1282100

Query: 278     VERQAD-----GRLLVRYRNTTTQMDGSDVFDTVLWAIGRKGLIEDLNLDAAGVKTHDDK 332
                   AD     G        TT ++    V +  L +IGR      L ++   +KT   +
Sbjct: 1282099 ARHPADPAPQSGVQYTVMDRTTRKLTTFQV-ERALISIGRVPDYSRLGIENTTLKTRGSQ 1281923

Query: 333     IVVDA-AEATSVPHIFAVGDIIYGRPELTPVAILSGRLLARRLFAGSTQLMD--YADVAT 389
               + V+   +    PHIFAVGD      +L  +     +L    ++    +++      +++
Sbjct: 1281922 LHVNEFGQCVGTPHIFAVGDAA-THMQLVSMGEAQAKLAVDYIYGTEPKVVPNLTETMSS 1281746

Query: 390     TVFTPLEYSCVGMSEETAIELRGADNIEVFHGYYKPTEFFIPQKSVRHCYLKAVAEVSGD 449
                 F     + VG +E    E +G   I   + Y   +       +    ++K +     +
Sbjct: 1281745 VAFLTRAVASVGYNESQCRE-KGIAYIAARYSYEVVSRAVAAANT--KGFVKIICADDPE 1281575

Query: 450     QKILGLHYIGPVAGEVIQGFAAALKTGLTVKTLLNTVGIHPTTAEEF 496
               ++ILG+  +G  A  ++   A A++ G  V  L   +  +P  ++ F
Sbjct: 1281574 RRILGVRALGMNASTLVDIGALAIQNGQGVFDLAGRLTAYPAVSQAF 1281434



 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 147/371 (39%), Gaps = 17/371 (4%)
 Frame = -3

Query: 138     RVDLRDKKVEYVNSMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGAVE 197
               R  L    V+ +   ATF + + I+       E+R + ++ VV+A G  PR         
Sbjct: 1279053 RAFLEASGVQLIEGKATFANPNEIDVHTEGTGEYRSLQADNVVIATGAIPRSHAFAKCDH 1278874

Query: 198     LGITSDDIFSYEREPGRTLVVGAGYVGLECACFLKGLGYEPTVMVRSI--VLRGFDRQMS 255
                 I +         P   +V+GAG +G E A     LG     +V     +L   D  ++
Sbjct: 1278873 NRILNSTSLFEMPIPASMVVIGAGAMGCEVASMFAKLGRTKVRLVDKAPRILPKEDEDVA 1278694

Query: 256     ELLAAMMTERGIPF-LGTTIPKAVERQADGRLLVRYRNTTTQMDGSDVF---------DT 305
                 +   +  RG+    G  +      + D R  +R           D+F         + 
Sbjct: 1278693 SYVQRHLIRRGVVIHQGCRLFDLEAGEEDCRYSLR-----------DIFSGDIETYHAER 1278547

Query: 306     VLWAIGRKGLIEDLNLDAAGVKTHDDKIVVDA-AEATSVPHIFAVGDIIYGRPELTPVAI 364
                + A+GR+  +  L L+   ++  + ++  D         HI+ +GD   GR +    A 
Sbjct: 1278546 AMVAVGRQPNLGALGLENTKMRVENGQLDCDEYGRCKPYKHIYCIGDAT-GRQKTVNTAQ 1278370

Query: 365     LSGRLLARRLFAGSTQLM----DYADVATTVFTPLEYSCVGMSEETAIELRGADNIEVFH 420
                +G+ +   +F  S +L        ++AT +F   E + +G+SE+      G   I    
Sbjct: 1278369 TAGQAVVDTMFGCSPKLAVSNNALTNIATDMFLEDEVASIGLSEKQC-RASGIGYIVARL 1278193

Query: 421     GYYKPTEFFIPQKSVRHCYLKAVAEVSGDQKILGLHYIGPVAGEVIQGFAAALKTGLTVK 480
                Y   T   +     +  ++K +     ++++LG+  +GP AG V++  +  +    +V 
Sbjct: 1278192 EYKHLTRPIV--MGAKDGFVKMIVTNDREKRVLGVRAVGPHAGSVVEVASLPILKNESVY 1278019

Query: 481     TLLNTVGIHPT 491
               T+L     +P+
Sbjct: 1278018 TMLKHNPAYPS 1277986


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 37.7 bits (86), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -2

Query: 10     STHNALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKEAAGCGARVLCFD---YVKP 66
              ST   L  +L   RL+ +R  YDYD++++GG  AG   AK  +  G +VL  +   + KP
Sbjct: 612828 STLLLLNRTLSRLRLSPARTSYDYDVIIVGGSIAGPVLAKALSDQGRKVLMVERTLFTKP 612649


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 32.7 bits (73), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +1

Query: 35     LVVLGGGSAGLACAKEAAGCGARVLCFD 62
              ++++GGG AG + A EAA CGA+V+  +
Sbjct: 537268 VIIVGGGLAGCSAAIEAANCGAQVILLE 537351


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 32.0 bits (71), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 26/49 (53%)
 Frame = +2

Query: 14     ALRSSLGWCRLAASRPRYDYDLVVLGGGSAGLACAKEAAGCGARVLCFD 62
              A RSS  W  L  S     +DL+V+GGG  GL  A +AA  G RV   D
Sbjct: 163979 APRSSR-WSALQRSSAADPFDLLVIGGGLTGLYTAVDAAQRGLRVALVD 164122


>LmjF23_01_20050601_V5.2
             [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 31.2 bits (69), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 47    CAKEAAGCGARVLCFDYVKPTPVGTKW 73
             CA+ +AGCG RVLC         GT W
Sbjct: 73965 CARTSAGCGCRVLCRLRCTSETRGTAW 74045



 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 47    CAKEAAGCGARVLCFDYVKPTPVGTKW 73
             CA+ +AGCG RVLC         GT W
Sbjct: 65804 CARTSAGCGCRVLCRLRCTSETRGTAW 65884


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 485    TVGIHPTTAEEFTRLSITKRSGRDPTPAS 513
              ++ + P  A  F  LS T RSG  PTPAS
Sbjct: 570486 SIALSPAAATRFATLSTTSRSGPRPTPAS 570572


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000049_1.0 # Protein # Methionine sulfoxide reductase A1
(MsrA1) # Anopheles gambiae # Complete
         (236 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    79   3e-15
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    31   0.65 
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    30   1.2  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    28   7.6  

>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 25/166 (15%)
 Frame = +3

Query: 31     KATFGMGXFWGCDSLF--GATKGVLRTRVGYAGG-----STESPAYKKMGDHTEVIEIDY 83
              +ATF  G +WG +  F       ++  +VG+ GG      T S   K    H EV+++ Y
Sbjct: 570102 RATFAAGCYWGTEHFFVRNFKDSIVSHQVGFMGGIEGKAVTYSEVTKGTTGHAEVLDLMY 570281

Query: 84     DPQTISYNDLLDLFWNNHEYGLTTRMKRQ-------YMSLILYHNEQQRQIAEA-----S 131
              DP+ +SY DLL  F+  H    +T + RQ       Y S I YHNE+Q++ AEA     +
Sbjct: 570282 DPEKVSYKDLLSFFFRMHN---STTVNRQAGDIGTNYRSAIFYHNEEQKKEAEAYIAKLN 570452

Query: 132    RAEEQVKR------APEQIITEIAPAGPFYPAENYHQKYRLQGHTD 171
               A+E++        A    IT +  AG FYPA   HQ Y L+ H +
Sbjct: 570453 GADEKLHSSFSKAFAGAPCITGLEKAGTFYPAHEGHQNY-LEKHPN 570587


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 31.2 bits (69), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 102    EYGLTTRMKRQYMSL-ILYHNEQQRQIAEASRAEEQVKRAPEQI 144
              + G  T   RQ++ L +L H E QR++A   R    V RAP ++
Sbjct: 732251 QRGRGTDAARQHLQLTVLAHGEHQRRVARVLRRGRHVARAPVRV 732382


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 30.4 bits (67), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 106    TTRMKRQYMSLILYHNEQQRQIAEASRAEEQVKRAPEQIITEIAPAGP 153
              TTR +R   S+IL H+ + RQ    + A E + RAP      +  AGP
Sbjct: 311468 TTRHQRALRSIILQHSTRPRQSRPRAPASESLVRAP------VPGAGP 311593


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 27.7 bits (60), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +2

Query: 166    LQGHTDLAKGIGLTPDLLHTSHVA-----ARLNGYL--IGVSGLKQFEDEADLLG 213
              ++GHT L +G+G   D LH  H+       RL   +  +G  GL+  E+   LLG
Sbjct: 525047 VRGHTALEEGVGGAGDDLHVRHLPFVLGRQRLQDAVVWVGAVGLEYLENVRALLG 525211


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000050_1.0 # Protein # Methionine sulfoxide reductase A2
(MsrA2) # Anopheles gambiae # Complete
         (236 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    78   7e-15
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    31   0.66 
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    30   1.2  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    28   8.0  

>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 25/166 (15%)
 Frame = +3

Query: 31     KATFGMGXFWGCDSLF--GATKGVLRTRVGYAGG-----STESPAYKKMGDHTEVIEIDY 83
              +ATF  G +WG +  F       ++  +VG+ GG      T S   K    H EV+++ Y
Sbjct: 570102 RATFAAGCYWGTEHFFVRNFKDSIVSHQVGFMGGIEGKAVTYSEVTKGTTGHAEVLDLMY 570281

Query: 84     DPQTISYIDLLDLFWNNHEYGLTTRMKRQ-------YMSLILYHNEQQRQIAEA-----S 131
              DP+ +SY DLL  F+  H    +T + RQ       Y S I YHNE+Q++ AEA     +
Sbjct: 570282 DPEKVSYKDLLSFFFRMHN---STTVNRQAGDIGTNYRSAIFYHNEEQKKEAEAYIAKLN 570452

Query: 132    RAEEQVKR------APEQIITEIAPAGPFYPAENYHQKYRLQGHTD 171
               A+E++        A    IT +  AG FYPA   HQ Y L+ H +
Sbjct: 570453 GADEKLHSSFSKAFAGAPCITGLEKAGTFYPAHEGHQNY-LEKHPN 570587


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 31.2 bits (69), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 102    EYGLTTRMKRQYMSL-ILYHNEQQRQIAEASRAEEQVKRAPEQI 144
              + G  T   RQ++ L +L H E QR++A   R    V RAP ++
Sbjct: 732251 QRGRGTDAARQHLQLTVLAHGEHQRRVARVLRRGRHVARAPVRV 732382


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 30.4 bits (67), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 106    TTRMKRQYMSLILYHNEQQRQIAEASRAEEQVKRAPEQIITEIAPAGP 153
              TTR +R   S+IL H+ + RQ    + A E + RAP      +  AGP
Sbjct: 311468 TTRHQRALRSIILQHSTRPRQSRPRAPASESLVRAP------VPGAGP 311593


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 27.7 bits (60), Expect = 8.0,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +2

Query: 166    LQGHTDLAKGIGLTPDLLHTSHVA-----ARLNGYL--IGVSGLKQFEDEADLLG 213
              ++GHT L +G+G   D LH  H+       RL   +  +G  GL+  E+   LLG
Sbjct: 525047 VRGHTALEEGVGGAGDDLHVRHLPFVLGRQRLQDAVVWVGAVGLEYLENVRALLG 525211


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Anopheles gambiae # Complete
         (396 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   278   4e-75
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    29   5.2  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    28   9.7  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  278 bits (712), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 165/381 (43%), Positives = 229/381 (60%), Gaps = 16/381 (4%)
 Frame = -3

Query: 17      NTGMVLRRP-FDPTAHDLDASFRLTRFADLKGXCCKVPKEVLEKLVSSLQQDYMQDPDQP 75
               N  + L+ P FDP +  L A F+LT +  LKG  CK+P+    KL++ LQ+         
Sbjct: 2095696 NGAVDLKTPRFDPVSLGLPAEFQLTDYTRLKGCSCKLPQP---KLLALLQE--------- 2095553

Query: 76      FMPMSSPRIGIGLDCSVIPLRHG-----GLCMVQTTDFFYPIVDDPYMMGKIACANVLSD 130
                +  +  +  +G+DCS++PL H       L +V TTDFF+P V DP++ G+I  ANVLSD
Sbjct: 2095552 -LSATPGQKDVGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSD 2095376

Query: 131     LYAMGVTEVDNMLMLLAVSTKMIEKERDVVIPLIMRGFKDSALEAGTSVTGGHSVVNPWC 190
               LY+MG+ + D MLMLLA ST+M E ER +    IM+GF + A  A T+VTGG +V+NPW 
Sbjct: 2095375 LYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTVMNPWP 2095196

Query: 191     TIGGVATTICQQNEFIVPDNAV-VGDVLVLTKALGTQVAVNAHQWLDQSERWNRIKLV-- 247
                IGGVA  +  + E + P   +  GD+LVLTK LG QVAVN  QWL +        +   
Sbjct: 2095195 LIGGVAMAVVSEAEMVRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGH 2095016

Query: 248     VSEEDVRKAYHRAMDSMSRLNRVAARLMHKYNAHGATDVTGFGLLGHAQTLASHQK---- 303
               +S E++ + Y+ A DSM RLNR  ARLM K+ AHGATDVTGFG+LGHA    + Q     
Sbjct: 2095015 ISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDA 2094836

Query: 304     -NEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQ-AAAYCKDIE 361
                  +  V+  LP+     A +K   + ++LL+G+SAETSGGLL+  P    AAA+C ++ 
Sbjct: 2094835 PRSLCLVLERLPMFKTAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTAAAAFCAELT 2094656

Query: 362     KQE-GCQAWIIGIVEKGSRTA 381
                 + GC +WI+G VE  +  A
Sbjct: 2094655 AVDGGCPSWIVGHVEDRATNA 2094593



 Score = 29.6 bits (65), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 241     WNRIKLVVSEEDVRKA--YHRAMDSMSRLNRVAARLMHKYNAHGATDVTGFGLLGHAQTL 298
               W ++ + +   D ++A  + R   ++S +N +   L  +YN H    +   G + HA+T+
Sbjct: 1081881 WRKLLVALQSVDAQEAPEHSRRRGALSLVNGLLIILFQRYNTHQCAVL--LGAVEHAETV 1081708

Query: 299     ASHQKNEVSFVIH 311
               A   K     ++H
Sbjct: 1081707 AESSKEPARSILH 1081669


>LmjF18_01_20050601_V5.2
             [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 29.3 bits (64), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 76    FMPMSSPRIGIGLDCSVIPLRHGGLCM 102
             + P + PR  +   CS  PLR  G+CM
Sbjct: 17912 YRPCAGPRGAVSWGCSASPLRSCGMCM 17832


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 28.5 bits (62), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +2

Query: 94     PLRHGGLCMVQTTDFFYPIV----DDPYMMGKIACANVLSD 130
              PLR G  C   T  F++P      +  Y++  + CA  LSD
Sbjct: 619133 PLRAGSTCAFSTHTFYFPSKFLSGNGVYIVTNVLCAESLSD 619255


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   233   2e-61
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    30   2.4  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    30   3.1  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    30   4.0  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  233 bits (594), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 141/367 (38%), Positives = 198/367 (53%), Gaps = 14/367 (3%)
 Frame = -3

Query: 2       FKPESYGLSHDFRLTKFSTLRGXGSKVPQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGI 61
               F P S GL  +F+LT ++ L+G   K+PQ  L  LL  +     G KD           +
Sbjct: 2095666 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSATP-GQKD-----------V 2095523

Query: 62      GLDSSVIALKHD------LFLVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQ 115
               G+D S++ L H       LFLV + DFF+P + DPF+ G+I  ANV+SD++++G  + D 
Sbjct: 2095522 GMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDT 2095343

Query: 116     IKLIVTAPTEFTEQEREVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCH 175
               + +++ A TE  E ER +    +M+GF E A+     V  G    NPW +IGG A AV  
Sbjct: 2095342 MLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTGGQTVMNPWPLIGGVAMAVVS 2095163

Query: 176     RSELIMPYNAQ-PGDALVLTKPLGTQLATNAYIWMGEQQSDSWAQLRERFTVADIEQTYR 234
                +E++ P      GD LVLTKPLG Q+A N   W+          +    +  +IE+ Y 
Sbjct: 2095162 EAEMVRPTGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYN 2094983

Query: 235     IALESMSRLNKTGAELMKKYGAHAATDVTGFGLYGHAENLASHQTA-----DVDFHLDTL 289
               +A +SM RLN+ GA LM+K+GAH ATDVTGFG+ GHA N  + Q        +   L+ L
Sbjct: 2094982 MATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNFGAAQAVGDAPRSLCLVLERL 2094803

Query: 290     PIIKNVREIAETLGRGAKLLAGKAVETSGGLLICLPR-EAAAGFCEEYRRCTKH-EAWIV 347
               P+ K     ++ +    +LL G + ETSGGLL+  P   AAA FC E         +WIV
Sbjct: 2094802 PMFKTAVAASKQMNDKYRLLEGYSAETSGGLLVAFPSTTAAAAFCAELTAVDGGCPSWIV 2094623

Query: 348     GHVEKGA 354
               GHVE  A
Sbjct: 2094622 GHVEDRA 2094602


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 30.4 bits (67), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 277    HQTADVDFHLDTLPIIKNVREIAETLGRGAKLLAGKAVETSGGLLICLPRE 327
              H+ A VD HLD LP+   +  +A  L   A++L  +AV    G++    RE
Sbjct: 196791 HRNAVVDLHLDPLPVAVELERVAAVL---ARVLRDEAVADHVGVVFQQCRE 196648



 Score = 30.4 bits (67), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 277    HQTADVDFHLDTLPIIKNVREIAETLGRGAKLLAGKAVETSGGLLICLPRE 327
              H+ A VD HLD LP+   +  +A  L   A++L  +AV    G++    RE
Sbjct: 167081 HRNAVVDLHLDPLPVAVELERVAAVL---ARVLRDEAVADHVGVVFQQCRE 166938



 Score = 30.0 bits (66), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -1

Query: 277    HQTADVDFHLDTLPIIKNVREIAETLGRGAKLLAGKAVETSGGLLICL---PREAAA 330
              H+ A VD HLD LP+   +  +A  L   A++L  +AV    G++      P +AAA
Sbjct: 146345 HRNAVVDLHLDPLPVAVELERVAAVL---ARVLRDEAVADHVGVVFQQSGEPSKAAA 146184


>LmjF33_01_20050601_V5.2
              [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 30.0 bits (66), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 320    LLICLPREAAAGFCEEYRRCTKHEAWIVGHVEKGARG 356
              LL CLPR AA    +E+    + EAW  GH + G  G
Sbjct: 179734 LLFCLPRRAAGEAGQEHHHKVR-EAWHGGHADGGRAG 179627


>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 29.6 bits (65), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
 Frame = +3

Query: 317     SGGLLICLPREAAAGFCEEYRRCTKHEAWIVGHVEKGAR--------GVKMNP 361
               +G    C P  A A FC  +RR  +  A+ + H   GAR        GV+M P
Sbjct: 1865451 NGAAQAC*PPRAVAFFCAAWRRHRRPFAFAIAHPR*GARVRKADTLCGVEMPP 1865609



 Score = 28.5 bits (62), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 250    LMKKYGAHAATDVTGFGLYGHAENLASHQTADVDFH 285
              L+ +YG  AA ++  +   GH     ++ TAD D H
Sbjct: 679429 LVHRYGTQAAMELPRYNARGHIRQGHTYMTADTDSH 679536


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000051_1.0 # Protein # Selenoprotein 15 (Sel15) #
Anopheles gambiae # Complete
         (163 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    27   4.7  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    27   5.6  

>LmjF06_01_20050601_V5.2
             [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 27.3 bits (59), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 42    SSLSDYGLIELKEHCLECCQKDTEADSK-LKVYPAAVLEVCTXK 84
             +SLS    I LK+ CL+  Q++ +   + +KV  A+VL+V T +
Sbjct: 66778 TSLSGLVTINLKQECLQWSQRNPKGGKQTIKVPLASVLDVFTTR 66647


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 27.3 bits (59), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = +1

Query: 30     GLIKSQLFCSSCSSLSDYG------LIELKEHCLECCQ 61
              G ++S +F    + L D G      L+ L++HCLEC +
Sbjct: 129313 GYLRSHVFALRHAKLRDTGDEVCEGLLLLRQHCLECAR 129426


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000052_1.0 # Protein # Selenoprotein H1 (SelH1) #
Anopheles gambiae # Complete
         (131 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    28   1.3  
LmjF13_01_20050601_V5.2 [~/leish/curated/chr13/LmjF13_01_2005060...    28   2.2  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    27   3.4  
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    27   4.1  

>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 28.5 bits (62), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 100    LVWSGLPKGPPRKDKFPEPKTILDDVLKV 128
              L W G  K PP+  K P  KT+  DVLK+
Sbjct: 186730 LPW*GEKKRPPQHQKEPREKTLTVDVLKI 186816



 Score = 26.2 bits (56), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
 Frame = +2

Query: 3       PRRKRAAAAKSTETAAKKAKPEESASTPVEESQDGAYVFIEHCKSXSVF---KRKAAEVH 59
               PR +    A S+ T A  A+ + +  +P   + D A     H    S+    K   AE +
Sbjct: 1845719 PRSQSVPTAGSSATGAGTAEAQLTTESP--STADSALPVTAHEYFKSIMELAKDAEAEHY 1845892

Query: 60      SGLCELA------PEHKFQLVLNEDGKPRRGA 85
                 +   A      P+H   + + E   PRRGA
Sbjct: 1845893 RAVAREARASSRGPQHDVSVDVREGESPRRGA 1845988


>LmjF13_01_20050601_V5.2
              [~/leish/curated/chr13/LmjF13_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 654604

 Score = 27.7 bits (60), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 88     VSIAKGKDGEKVLVWSGLPKGPPRKDKFPE 117
              + + K K GEK+LVWS        ++ FPE
Sbjct: 540720 MKVTKHKQGEKILVWSAFKDFTDDEEGFPE 540631


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 27.3 bits (59), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -2

Query: 16     TAAKKAKPEESASTPVEESQDGAYVFIEHCKSXSVFKRKAAEVHSGLCELAPEHKFQLVL 75
              TAA +++  E   TP+  + DGA   + H     V        H+ LC L  E + QL L
Sbjct: 202177 TAADRSEQRERIDTPLTTTLDGARHILPHTIVRGV-------THNHLCSLPRERRRQLSL 202019


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 26.9 bits (58), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 2      APRRKRAAAAKSTETAAKKAKPEES 26
              A  RK AAAA+ TE+  +KAK EE+
Sbjct: 132053 AGTRKIAAAARGTESCRRKAKREEA 131979


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000053_1.0 # Protein # Selenoprotein K1 (SelK1) #
Anopheles gambiae # Complete
         (96 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    28   0.81 
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    28   1.3  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    27   1.8  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    27   2.5  
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    27   2.6  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    26   4.7  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    25   6.1  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    25   6.5  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    25   7.2  

>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 28.5 bits (62), Expect = 0.81,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 37     RTMLDFQGGGGSGGRDTTRGYGGSGGGG 64
              R ++   GGGG+ G    RGY GSG GG
Sbjct: 320896 RELI*VSGGGGACGCVDCRGYRGSGAGG 320979


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 27.7 bits (60), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 59     GSGGGGGGGPPGGGPRRRPIGRPMTLSDCTIPGGG 93
               SGGG  G PP   P     G+PMT +    P  G
Sbjct: 443119 ASGGGNKGKPPTALPAAACDGKPMTTAGPQDPTAG 443223



 Score = 25.4 bits (54), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 63     GGGGGPPGGGPRRRP 77
              G   GPP G PRRRP
Sbjct: 451521 GSSSGPPAGCPRRRP 451565


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 27.3 bits (59), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 47     GSGGRDTTRGYGGSGGGGGGGPPG 70
              G GG  T  GY G+GG G G P G
Sbjct: 302182 GQGGSRTMYGYAGTGGHGSGHPFG 302253


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 26.9 bits (58), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 43      QGGGGSGGRDTTRGYGGSGGGGGGGPP 69
               Q GG +  +D+T  +    GGGG GPP
Sbjct: 1567113 QRGGSAFVKDSTATWV*QSGGGGAGPP 1567033


>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 55      RGYGGSGGGGGGGPPGGGPRRRPIGRPMTL 84
               R +G + G  G G      RRR IGRP +L
Sbjct: 1193859 REHGAAVGDDGSGRLAASLRRRHIGRPESL 1193770


>LmjF26_01_20050601_V5.2
               [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 25.8 bits (55), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = +3

Query: 43      QGGGGSGGRDTTRGYGGSGGGGGGGPPGGGPRRRPIGRP 81
               Q G   G    TRG G   GGG G     G RRR   RP
Sbjct: 1014993 QRGAPFGCVSDTRGLGNCDGGGRGRNGASGGRRRA*VRP 1015109


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 25.4 bits (54), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = +1

Query: 52     DTTRGYGGSGGGGGGGPPG-----GGPRRRPIGRPMTLSD 86
              DTT   G +GG  G G PG      G RR  +   M   D
Sbjct: 433009 DTTPVPGAAGGDSGNGNPGAKGGLAGTRRHTLAASMRALD 433128


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 25.4 bits (54), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 44     GGGGSGG--RDTTRGYGGSGGGGGGGPPGGGPRR 75
              G GG  G  R TTR   G+  G G  P GG PRR
Sbjct: 481190 GCGGCSGVPRSTTRVRDGATRGAGAPPTGGSPRR 481291


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 25.4 bits (54), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 3      YISRNGAVQEAQPW 16
              Y+SRNG   +A PW
Sbjct: 964079 YVSRNGTTLDASPW 964120


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000054_1.0 # Protein # Selenoprotein T (SelT) # Anopheles
gambiae # Complete
         (202 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    40   0.001
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    30   1.7  

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 40.0 bits (92), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 6/143 (4%)
 Frame = +3

Query: 48     MTFLYCYSXGYRKAFDDYHNLILEKYP---EITIRGSNYDPSGVNMLLSKVLLVTKLLLI 104
              +  LYC   GY K F+D    +    P   E+ I G  Y       L +KV     L  +
Sbjct: 510333 LEVLYCTG*GYAKYFEDMKQQLQHTLPNAQEVRIVGGTYPTPPARALAAKVCSTAFLASL 510512

Query: 105    AALMSNYDIGRYIGNPFAGWWQWCFNNKLYASMMIF---FLGNTLEAQLISSGAFEITLN 161
                 ++        G           N       M+    FL N +   L  +GAFE++L+
Sbjct: 510513 GVALA--------GQQLVFLPPTVLNFIAQQRGMLIGAGFLLNMIGGALGQTGAFEVSLD 510668

Query: 162    DVPVWSKLETGRFPAPQEMFQII 184
                 ++SKL+ G  PA  E+ +I+
Sbjct: 510669 GELIFSKLQAGAVPAVAEIRRIV 510737


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 29.6 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 113    IGRYIGNPFAGWWQWCF 129
              +GR  G P   WWQW F
Sbjct: 934629 LGRSGGKPLHAWWQWGF 934579


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000085_1.0 # Protein # Eukaryotic elongation factor
(eEFSec) # Caenorhabditis elegans # Complete
         (500 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...   151   1e-36
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...   108   1e-23
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    65   9e-11
LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    60   4e-09
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    59   7e-09
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    56   9e-08
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    52   9e-07
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    50   4e-06
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    50   5e-06
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    48   2e-05
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    47   3e-05
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    38   0.018
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    33   0.74 
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    32   1.6  

>LmjF34_01_20050601_V5.2
               [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score =  151 bits (382), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 106/359 (29%), Positives = 174/359 (48%), Gaps = 42/359 (11%)
 Frame = +1

Query: 14      LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFST-------- 65
               +N+G+LGHVDSGKT L + ++   ST+AFD    S +    R  TLDLGFS         
Sbjct: 1301260 VNIGLLGHVDSGKTALAKALSSTASTAAFDKSPQSQS----RGITLDLGFSACEVSVEDG 1301427

Query: 66      ---------MTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEH 116
                           L+  +  L+DCPGH+ LIR V+  + + D  ++++D   GIQ QTAE 
Sbjct: 1301428 NEDATQVLRAAELTKVQCTLVDCPGHASLIRTVVGGAQIIDAMVLVVDATKGIQVQTAEC 1301607

Query: 117     LLLASKFCPNRVIIVLNKCDLAEKSKISESAKK-----VRKGLKSMGVDENSPIVEMSLA 171
               L+L  +     +++VLNK D  +   +S + K+     +++ L+ +      P V +   
Sbjct: 1301608 LVLG-EVLAKPLVVVLNKIDAIQ--GVSPAGKEAALAALKRKLQQVFRRTRWPTVAIVEV 1301778

Query: 172     DGYFKE----------------EMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQ 215
                   +E                ++L+ + LA      E + +   +F + +DHCFA++GQ
Sbjct: 1301779 AAAPREVAGGIGHPVNTEAVLPQVLRAVDLAALKSAKESEAERPAQFYMLVDHCFAVRGQ 1301958

Query: 216     GTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLVAPSFDEH 275
               GTV TGTV+ GV+R+   +  P L   R+VK L+ + + V     G R    VA  FD  
Sbjct: 1301959 GTVFTGTVVAGVVRVGDTVLVPELQTTRKVKGLQAFHKPVELAQGGDRVGLCVA-QFDPT 1302135

Query: 276     RFSR---CICGPLG-TLKSTKFVLATVEPIQFFRKSINSKSKIHVAVAFETVMAECQFL 330
                  R   C     G TL S+  ++A V  +++     ++ ++ H+ +   TVM   ++ 
Sbjct: 1302136 WMERGVVCSAASSGRTLVSSSQLIARVHRVRYHPLPCDTHTRFHITIGHATVMGTMRYF 1302312



 Score = 39.3 bits (90), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
 Frame = +1

Query: 15     NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTD----------GIRRNTLDLGFS 64
              N+ ++ HVD GKTTL+  +    +    D  AT T TD           I+  T  +  +
Sbjct: 243328 NVSVVAHVDHGKTTLSDAMLRFSNLLPADG-ATGTFTDRLKVEKERGITIKAQTCSVLLT 243504

Query: 65     TMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLA 120
                 + +   + LID PGH      V  +    + A +++DV  G++ QT      A
Sbjct: 243505 VRETGTQYLVNLIDTPGHVDFQYEVSRSLCASEGAALLVDVRQGVEAQTMAQFYAA 243672


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 15/281 (5%)
 Frame = +1

Query: 14     LNLGILGHVDSGKTTLTRRI----AELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSL 69
              L +G +GHVD GKTTLT  I    A+ G   A D  A   + +   R             
Sbjct: 314716 LIIGTIGHVDHGKTTLTSAITTVLAKRGQAQALDYFAIDKSPEEKSRKITINATHVEYES 314895

Query: 70     SGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVI 129
                R    IDCPGH   ++ ++  +   D  I+++    G+ PQT EHLL+ S+     ++
Sbjct: 314896 EKRHYGHIDCPGHMDFVKNMITGAAQMDGGIIVVAATDGVMPQTREHLLICSQIGLPALV 315075

Query: 130    IVLNKCDLAEKSKISESAKKVRKGLKSMGVD-ENSPIVEMSL-----ADGYFKEEMLQNL 183
                +NK D+ ++        +VR+ L+      E +PIV  S       D  ++E +L+ +
Sbjct: 315076 GFINKVDMTDEDTCDLVDMEVREQLEKYKFPAEETPIVRGSALKAVEGDAKYEENILELV 315255

Query: 184    KLAIESRIFEPKRDEEGEFLIAIDHCFAI--KGQGTVLTGTVIRGVLRLNTEIEFPALNE 241
              +   +  I +P R+ +  FL+AI+H + I    +  ++TG V +GVL+LNT+ E    + 
Sbjct: 315256 R-KCDEWIPDPPRNTDKPFLMAIEHVYEIGKDKKSVIVTGRVDQGVLKLNTDAELAGFSA 315432

Query: 242    KR---RVKTLETWKQRVGQVAAGARAAFLVAPSFDEHRFSR 279
              K+   RV  +E + + + +   G      +  + D    S+
Sbjct: 315433 KKSTVRVTGIEMYHKTLSECMPGDSVGVSIVGTGDTTSLSK 315555


>LmjF17_01_20050601_V5.2
             [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 43/298 (14%)
 Frame = -3

Query: 14    LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
             +NL ++GHVD+GK+T T                   +  AE+G  S   A          
Sbjct: 43195 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAER 43016

Query: 55    RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AG 108
              R  T+D+      S       +ID PGH   I+ ++  ++  D AI++ID       AG
Sbjct: 43015 ERGITIDIALWKFES-PKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAG 42839

Query: 109   IQP--QTAEHLLLASKFCPNRVIIVLNKCD----LAEKSKISESAKKVRKGLKSMGVD-- 160
             I    QT EH LLA      ++++  NK D       +S+  E +K+V   LK +G +  
Sbjct: 42838 ISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGAYLKRVGYNPE 42659

Query: 161   ----------ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCF 210
                       +   ++E S    ++K   L +    +E     P R  +    + +   +
Sbjct: 42658 KVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEP----PVRPVDKPLRLPLQDVY 42491

Query: 211   AIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
              I G GTV  G V  G+++    + F   N    VK++E   +++ +   G    F V
Sbjct: 42490 KIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNVGFNV 42317



 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 43/298 (14%)
 Frame = -1

Query: 14    LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
             +NL ++GHVD+GK+T T                   +  AE+G  S   A          
Sbjct: 40986 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAER 40807

Query: 55    RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AG 108
              R  T+D+      S       +ID PGH   I+ ++  ++  D AI++ID       AG
Sbjct: 40806 ERGITIDIALWKFES-PKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAG 40630

Query: 109   IQP--QTAEHLLLASKFCPNRVIIVLNKCD----LAEKSKISESAKKVRKGLKSMGVD-- 160
             I    QT EH LLA      ++++  NK D       +S+  E +K+V   LK +G +  
Sbjct: 40629 ISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGAYLKRVGYNPE 40450

Query: 161   ----------ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCF 210
                       +   ++E S    ++K   L +    +E     P R  +    + +   +
Sbjct: 40449 KVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEP----PVRPVDKPLRLPLQDVY 40282

Query: 211   AIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
              I G GTV  G V  G+++    + F   N    VK++E   +++ +   G    F V
Sbjct: 40281 KIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNVGFNV 40108



 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 43/298 (14%)
 Frame = -2

Query: 14    LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
             +NL ++GHVD+GK+T T                   +  AE+G  S   A          
Sbjct: 29981 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAER 29802

Query: 55    RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AG 108
              R  T+D+      S       +ID PGH   I+ ++  ++  D AI++ID       AG
Sbjct: 29801 ERGITIDIALWKFES-PKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAG 29625

Query: 109   IQP--QTAEHLLLASKFCPNRVIIVLNKCD----LAEKSKISESAKKVRKGLKSMGVD-- 160
             I    QT EH LLA      ++++  NK D       +S+  E +K+V   LK +G +  
Sbjct: 29624 ISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGAYLKRVGYNPE 29445

Query: 161   ----------ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCF 210
                       +   ++E S    ++K   L +    +E     P R  +    + +   +
Sbjct: 29444 KVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEP----PVRPVDKPLRLPLQDVY 29277

Query: 211   AIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
              I G GTV  G V  G+++    + F   N    VK++E   +++ +   G    F V
Sbjct: 29276 KIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNVGFNV 29103



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 43/298 (14%)
 Frame = -1

Query: 14    LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
             +NL ++GHVD+GK+T T                   +  AE+G  S   A          
Sbjct: 34386 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAER 34207

Query: 55    RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AG 108
              R  T+D+      S       +ID PGH   I+ ++  ++  D AI++ID       AG
Sbjct: 34206 ERGITIDIALWKFES-PKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAG 34030

Query: 109   IQP--QTAEHLLLASKFCPNRVIIVLNKCD----LAEKSKISESAKKVRKGLKSMGVD-- 160
             I    QT EH LLA      ++++  NK D       +S+  E +K+V   LK +G +  
Sbjct: 34029 ISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGAYLKRVGYNPE 33850

Query: 161   ----------ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCF 210
                       +   ++E S    ++K   L +    +E     P R  +    + +   +
Sbjct: 33849 KVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALGMLEP----PVRPVDKPLRLPLQDVY 33682

Query: 211   AIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
              I G GTV  G V  G+++    + F   N    VK++E   +++ +   G    F V
Sbjct: 33681 KIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNVGFNV 33508



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 43/298 (14%)
 Frame = -1

Query: 14    LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
             +NL ++GHVD+GK+T T                   +  AE+G  S   A          
Sbjct: 36582 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAER 36403

Query: 55    RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AG 108
              R  T+D+      S       +ID PGH   I+ ++  ++  D AI++ID       AG
Sbjct: 36402 ERGITIDIALWKFES-PKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAG 36226

Query: 109   IQP--QTAEHLLLASKFCPNRVIIVLNKCD----LAEKSKISESAKKVRKGLKSMGVD-- 160
             I    QT EH LLA      ++++  NK D       +S+  E +K+V   LK +G +  
Sbjct: 36225 ISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGAYLKRVGYNPE 36046

Query: 161   ----------ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCF 210
                       +   ++E S    ++K   L +    +E     P R  +    + +   +
Sbjct: 36045 KVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEP----PVRPVDKPLRLPLQDVY 35878

Query: 211   AIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
              I G GTV  G V  G+++    + F   N    VK++E   +++ +   G    F V
Sbjct: 35877 KIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNVGFNV 35704



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 43/298 (14%)
 Frame = -1

Query: 14    LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
             +NL ++GHVD+GK+T T                   +  AE+G  S   A          
Sbjct: 38778 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAER 38599

Query: 55    RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AG 108
              R  T+D+      S       +ID PGH   I+ ++  ++  D AI++ID       AG
Sbjct: 38598 ERGITIDIALWKFES-PKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAG 38422

Query: 109   IQP--QTAEHLLLASKFCPNRVIIVLNKCD----LAEKSKISESAKKVRKGLKSMGVD-- 160
             I    QT EH LLA      ++++  NK D       +S+  E +K+V   LK +G +  
Sbjct: 38421 ISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGAYLKRVGYNPE 38242

Query: 161   ----------ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCF 210
                       +   ++E S    ++K   L +    +E     P R  +    + +   +
Sbjct: 38241 KVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEP----PVRPVDKPLRLPLQDVY 38074

Query: 211   AIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
              I G GTV  G V  G+++    + F   N    VK++E   +++ +   G    F V
Sbjct: 38073 KIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNVGFNV 37900



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 43/298 (14%)
 Frame = -2

Query: 14    LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
             +NL ++GHVD+GK+T T                   +  AE+G  S   A          
Sbjct: 32177 MNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAER 31998

Query: 55    RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AG 108
              R  T+D+      S       +ID PGH   I+ ++  ++  D AI++ID       AG
Sbjct: 31997 ERGITIDIALWKFES-PKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAG 31821

Query: 109   IQP--QTAEHLLLASKFCPNRVIIVLNKCD----LAEKSKISESAKKVRKGLKSMGVD-- 160
             I    QT EH LLA      ++++  NK D       +S+  E +K+V   LK +G +  
Sbjct: 31820 ISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGAYLKRVGYNPE 31641

Query: 161   ----------ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCF 210
                       +   ++E S    ++K   L +    +E     P R  +    + +   +
Sbjct: 31640 KVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDMLEP----PVRPVDKPLRLPLQDVY 31473

Query: 211   AIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
              I G GTV  G V  G+++    + F   N    VK++E   +++ +   G    F V
Sbjct: 31472 KIGGIGTVPVGRVETGIMKPGDVVTFAPANVTTEVKSIEMHHEQLAEAQPGDNVGFNV 31299


>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 111/280 (39%), Gaps = 45/280 (16%)
 Frame = -1

Query: 9      SSVGPLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTM-- 66
              S    +N+G +GHV  GK+T+ + ++ +  T  F   A    T       + LG++    
Sbjct: 436911 SRQATINVGTIGHVAHGKSTVVKALSGV-KTQKFHREAVMNIT-------IHLGYANAKV 436756

Query: 67     ------------------------------TSLSGRRLALIDCPGHSGLIRAVLAASTVF 96
                                            T    R  + +DCPGH  L+  +L  + + 
Sbjct: 436755 YQCETCPRPTCYQTYPSSQPDSTPCPNCGETMTLKRHFSFVDCPGHDVLMATMLNGAAIM 436576

Query: 97     DMAIVIIDVVAGI-QPQTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRKGLK 155
              D A+++I       QPQT EHL          ++++ NK DL  + K  +  + VR  L 
Sbjct: 436575 DAALLLIAANESFPQPQTLEHLKAVEIMKLRHLVVLQNKIDLVGEVKAHDQYRHVRAYLD 436396

Query: 156    SMGVDENSPIVEMSLADGYFKEEMLQNLKLAIES--RIFEPKRDEEGEFLIAIDHCFAIK 213
              ++ +  N PIV +S        ++ +N+   +E    I  P R  +    + +   F I 
Sbjct: 436395 NIAL--NVPIVPIS-------AQLKRNVDYLLEYLLHIPMPVRQLKAPVRMTVVRSFDIN 436243

Query: 214    G---------QGTVLTGTVIRGVLRLNTEIEF-PALNEKR 243
                        +G V  GTV +GV+++   +E  P L   R
Sbjct: 436242 KPGEGDIESLKGGVAGGTVTQGVIKVGQVVEIRPGLVRSR 436123



 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 118/299 (39%), Gaps = 42/299 (14%)
 Frame = -3

Query: 14     LNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTM------- 66
              +N+G +GHV  GK+T+ + ++ +  T  F   A    T       + LG++         
Sbjct: 439705 INVGTIGHVAHGKSTVVKALSGV-KTQKFHREAVMNIT-------IHLGYANAKVYQCET 439550

Query: 67     -------------------------TSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIV 101
                                       T    R  + +DCPGH  L+  +L  + + D A++
Sbjct: 439549 CPRPTCYQTYPSSQPDSTPCPNCGETMTLKRHFSFVDCPGHDVLMATMLNGAAIMDAALL 439370

Query: 102    IIDVVAGI-QPQTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRKGLKSMGVD 160
              +I       QPQT EHL  A       +I++ NK DL  K + +     +   L +    
Sbjct: 439369 LIAANESFPQPQTLEHLAAAEMIGVLSLIVLQNKVDLVSKERAAAQYSIIHHYLATKTAY 439190

Query: 161    ENSPIVEMSL---ADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAI-----DHCFAI 212
                +P++ +     A+  F  + L ++ L           +    F +++     D   A+
Sbjct: 439189 AKAPVIPICAQQHANISFLLDYLVHIPLPRRQLHHAQYMNVLRSFDVSLPGPAGDGAKAL 439010

Query: 213    KGQGTVLTGTVIRGVLRLNTEIE-FPALNEKRRVKTLETWKQRVGQVAAGARAAFLVAP 270
              K  G V+ GTV  GVL +  EIE  P L   RR   +     R   V +G   A++ +P
Sbjct: 439009 K--GGVIGGTVAAGVLCVGDEIEIIPGLLVLRRRDGV---LPRRADVLSGRELAYVASP 438848


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
 Frame = +3

Query: 18      ILGHVDSGKTTLTRRI--------------AELGSTSAFDAHATSTTTDGIRRNTLDLGF 63
               +LGHVD+GKT+L  RI               ++G+T        S T + I+++  +L  
Sbjct: 1235199 VLGHVDTGKTSLLDRIRSTNVQGGEAGGITQQIGATFFPRESLVSATAELIKKHKCNLNV 1235378

Query: 64      STMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHL-LLASK 122
                         L +ID PGH          S++ D+AI+++D++ G++ QT E + LL  K
Sbjct: 1235379 PG--------LLVIDTPGHESFTNLRSRGSSLCDIAILVVDIMHGLEQQTRESIRLLREK 1235534

Query: 123     FCPNRVIIVLNKCD 136
                CP   I+ LNK D
Sbjct: 1235535 RCP--FIVALNKVD 1235570



 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 25/194 (12%)
 Frame = +3

Query: 66      MTSLSGRRLALIDCPGHSGLIRAVLAAST--VFDMAIVIIDVVAGIQPQTAEHLLLASKF 123
               + + S + + L D  GH   ++  +   T  + D A ++I    GIQ  T EHL L    
Sbjct: 1270284 LATRSSKVVTLYDLAGHERYLKTTVLGMTRNMPDYACIVISANNGIQRMTKEHLALCLAL 1270463

Query: 124     -CPNRVIIVLNKCDLAEKSKISESAKKVRKGLKSMGV----------------------D 160
                 P    IV+ + D    +   E+   + K LK   V                      D
Sbjct: 1270464 KLP--FFIVVTRIDSTPPNIHDETLSNIHKLLKIPTVRKLSYPVRRHDEVTLAAKNLRHD 1270637

Query: 161     ENSPIVEMSLADGYFKEEMLQNLKLAIESRIFEPKRDEEGEFLIAIDHCFAIKGQGTVLT 220
                 +PI E+S   G    ++LQ L L    + +   RD   E +  ID  F + G GTV+ 
Sbjct: 1270638 RIAPIFEVSNVTGAGIPDLLQFLNLLPTRKDWRQARDMPKEMI--IDSTFFVTGVGTVVG 1270811

Query: 221     GTVIRGVLRLNTEI 234
               G + +GV R+N  +
Sbjct: 1270812 GIITQGVFRVNETV 1270853


>LmjF22_01_20050601_V5.2
              [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
 Frame = -2

Query: 16     LGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLA 75
              + I+GHVD GKTTL   +           +  +    GI +N   +G   + +  G  + 
Sbjct: 515049 VSIMGHVDHGKTTLLDHLRH--------TNVAAGEAGGITQN---VGAFQVKTPDGHIIT 514903

Query: 76     LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLAS-KFCPNRVIIVLNK 134
               ID PGH+         +T  D+ ++I+  V G+QPQT E + LA  K  P  +++ + K
Sbjct: 514902 FIDTPGHAAFTAMREVGATTNDLIVLIVSAVDGVQPQTREVIELAQRKGTP--MVVAVTK 514729

Query: 135    CDLAEKSKISESAKKVRKGLKSMGVD-----ENSPIVEMSLADGYFKEEMLQNLKLAIE- 188
               D             V+  L + GVD      +  +V++   DG    E+L+ L L  E 
Sbjct: 514728 IDR------QPDCDYVKDQLAANGVDLEEKGGDVQLVKICAKDGRGIPELLEALHLQAEL 514567

Query: 189    SRIFEPKRDEEGEFLI-----------AIDHCFAIKGQGTVLTGTVIRGVLRL 230
                +  P       +++           A+  C  +K     +TGTV   V R+
Sbjct: 514566 CEVATPTPSRAEMYVLESRNLGVSEVAAVVRCGTVKPGQVFVTGTVYGTVKRI 514408


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
 Frame = -3

Query: 15     NLGILGHVDSGKTTLTRRIAELGSTS--AFDAHATSTTTDGIRRNTLDLGFSTMTSLSGR 72
              N+GI  H+D+GKTT T R+      +    D  + +TTTD ++    D G +  ++    
Sbjct: 763037 NIGIAAHIDAGKTTTTERMLFYAGVTKRVGDVDSGTTTTDFMKEEA-DRGITIQSAAVSL 762861

Query: 73     R-----LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKF-CPN 126
              R     + LID PGH      V     + D  + + D  AG+Q Q+   L  + +F  P 
Sbjct: 762860 RWRDHGINLIDTPGHVDFTVEVERTMRIVDGVVALFDASAGVQAQSYTVLQQSRRFNAP- 762684

Query: 127    RVIIVLNKCD 136
               +I  LNK D
Sbjct: 762683 -LIAFLNKMD 762657


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 32/180 (17%)
 Frame = +3

Query: 14     LNLGILGHVDSGKTTLT------------------RRIAELGSTSAFD-AHATSTT---- 50
               N+   GHVD+GK+T++                  RR AE+     ++ A+    +    
Sbjct: 481506 FNIVFCGHVDAGKSTISGHLLMEKGLVDQREMEKLRREAEINHREGWEYAYVMDVSEEER 481685

Query: 51     TDGIRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG-- 108
              + GI R T    F T      RR+ ++D PGH   + +++  +T  D+ +++I    G  
Sbjct: 481686 SKGITRETGAAYFET----EKRRVTVLDAPGHKAFVPSMIGGATQADICVLVISSRTGEF 481853

Query: 109    -----IQPQTAEHLLLASKFCPNRVIIVLNKCDLAE--KSKISESAKKVRKGLKSMGVDE 161
                      QT EH +L       ++I V+NK D  +  K + SE   +++  L+  G DE
Sbjct: 481854 ETGFEKGGQTREHAMLVRTCGVKQMICVINKMDEMKWSKERYSEIVGRLKPFLRQNGYDE 482033


>LmjF25_01_20050601_V5.2
             [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 11/196 (5%)
 Frame = -3

Query: 15    NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIR-RNTLDLGFSTMTSLSG-- 71
             N+ ++ HVD GKTTL   +     T A   +    + D  R R    L  +T   L    
Sbjct: 42661 NIAVIAHVDHGKTTLVDSMLSQSGTVANAHNRVMDSKDQERERGITILAKNTAILLDNGK 42482

Query: 72    RRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIV 131
             RR+ ++D PGH      V  A  + +  I+++D   G++P T  ++L  +     R I+ 
Sbjct: 42481 RRINIVDTPGHLDFSGEVERALQMVEGIILLVDAKEGVRPGT-RYVLRKALSLHLRPIVC 42305

Query: 132   LNKCDLAEKSKISESAKKVRKGLKSMGVDENSPIVEM---SLADGYF-----KEEMLQNL 183
             LNK D  +   I+++ + V         DEN   ++    S   GY      KE  L  L
Sbjct: 42304 LNKID-KDDLNIAKTEQAVEDLFLEAAEDENQLDMKFLYGSGRSGYMNEDPKKEGTLTPL 42128

Query: 184   KLAIESRIFEPKRDEE 199
                I S +  PK D++
Sbjct: 42127 FDTIFSTVPAPKTDDD 42080


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
 Frame = +2

Query: 16     LGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDLGFSTMTSLSGRRLA 75
                ++GHV+ GKT L   +      S   A      T  +R  T+                
Sbjct: 475241 FAVMGHVNHGKTALLDAL----QGSRIGAEEPHHITQSVRAFTM-----PRPGADNDLFT 475393

Query: 76     LIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEHLLLASKFCPNRVIIVLNKC 135
               ID PGH   +        + D+  ++I V  GI+ QT E + +A       VI+VLNK 
Sbjct: 475394 FIDTPGHRIFVETRFHVQLMADVIALVISVAEGIESQTHETIKVALN-VDKPVIVVLNKL 475570

Query: 136    DLAEKSKISESA-KKVRKGLKSMGVD 160
              DL   +  +E A +++   L S+G+D
Sbjct: 475571 DLLSDALTAEKAVRRILAELYSIGLD 475648


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
 Frame = +2

Query: 15     NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLDL----GFSTMTSLS 70
              N+GI  H+DSGKTTL+ RI                T  G   ++++L    G +  ++ +
Sbjct: 162734 NIGISAHIDSGKTTLSERILFYSGRIGKIHEVKGGTEVGATMDSMELEKERGITIRSAAT 162913

Query: 71     GRR-----LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113
                R     + +ID PGH      V  A  V D AI+++  V G+Q QT
Sbjct: 162914 QCRWKNSTINIIDTPGHVDFTIEVERALRVLDGAILLMCAVGGVQSQT 163057



 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
 Frame = -3

Query: 15    NLGILGHVDSGKTTLTR---------RIAELGSTSAFDAHATSTTTD-GIRRNTLDLGFS 64
             N+ ++ HVD GK+TL+          ++ E G     D  A        I+   + + + 
Sbjct: 60709 NMSVIAHVDHGKSTLSDSLVGAAGIIKMEEAGDKRIMDTRADEIARGITIKSTAISMHYH 60530

Query: 65    TMTSLSG-----RR---LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEH 116
                 + G     +R   + LID PGH      V AA  V D A+V++D V G+  QT E 
Sbjct: 60529 VPKEMIGDLDDDKRDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ET 60353

Query: 117   LLLASKFCPNRVIIVLNKCDLA 138
             +L  +     R ++ +NK D A
Sbjct: 60352 VLRQALTERIRPVVFINKVDRA 60287



 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
 Frame = -2

Query: 15    NLGILGHVDSGKTTLTR---------RIAELGSTSAFDAHATSTTTD-GIRRNTLDLGFS 64
             N+ ++ HVD GK+TL+          ++ E G     D  A        I+   + + + 
Sbjct: 57194 NMSVIAHVDHGKSTLSDSLVGAAGIIKMEEAGDKRIMDTRADEIARGITIKSTAISMHYH 57015

Query: 65    TMTSLSG-----RR---LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQTAEH 116
                 + G     +R   + LID PGH      V AA  V D A+V++D V G+  QT E 
Sbjct: 57014 VPKEMIGDLDDDKRDFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ET 56838

Query: 117   LLLASKFCPNRVIIVLNKCDLA 138
             +L  +     R ++ +NK D A
Sbjct: 56837 VLRQALTERIRPVVFINKVDRA 56772


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 38.1 bits (87), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 25/150 (16%)
 Frame = +2

Query: 18      ILGHVDSGKTTL---------------TRRIAELGSTSAFDAHATSTTTDGI-----RRN 57
               I GHVD+GK+T                  R  +   T   D+   +   D       R  
Sbjct: 1656428 IAGHVDAGKSTTLGHLLLLLGRVSIQDVERNEKADRTHHKDSFKYAWLLDQCEEERRRGV 1656607

Query: 58      TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVV-----AGIQPQ 112
               T+D G S       RR+ ++D PGH   +  +++++T  D A++++         G+   
Sbjct: 1656608 TIDSG-SFCFETEHRRVHILDAPGHKDFVLNMISSATQADAALLVVTATNSEFETGLHHG 1656784

Query: 113     TAEHLLLASKFCPNRVIIVLNKCDLAEKSK 142
               T  HLL+        +++ +NK D    S+
Sbjct: 1656785 TKSHLLVLKTLGVGSIVVAVNKMDAVAYSQ 1656874


>LmjF31_01_20050601_V5.2
             [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 32.7 bits (73), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +3

Query: 6     STSSSVGPLNLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
             +TS+ V P+ + +L     G+ T T  I+ + +TSA  A   S+++ G RR TLD
Sbjct: 56481 ATSNRVQPVEVKMLRERPGGRCTGTPGISSVPNTSARSAVDVSSSSTGFRRVTLD 56645


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 16/77 (20%)
 Frame = +1

Query: 73     RLALIDCPG-----HSGL---IRAVLAAS--------TVFDMAIVIIDVVAGIQPQTAEH 116
              R+AL+ CPG     HSG+   +R VL  +        ++    + + D     QPQT E 
Sbjct: 548722 RMALLACPGQHLRHHSGIGNQLRQVLHFAYNALLFC*SIAHFTLKVFD*----QPQTPEF 548889

Query: 117    LLLASKFCPNRVIIVLN 133
              LLL S F   R+I++L+
Sbjct: 548890 LLLRSFFGNQRMILLLS 548940


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000082_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Caenorhabditis elegans # Complete
         (163 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   134   3e-32
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    90   8e-19

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  134 bits (337), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
 Frame = -3

Query: 3      SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQXGLTNKNYTQLKELLDVYKKDGLEVLA 62
              S+YDF V  ++     L  +KG  L+I NVAS+ G T   Y     L + YK  G  VLA
Sbjct: 239310 SIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLA 239131

Query: 63     FPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNE-KGGFMFD 121
              FPCNQFAGQEP  E ++++F   +FK E  + +K+ VNG+ + PL+ +LKN  KG     
Sbjct: 239130 FPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTT 238951

Query: 122    AIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDI 155
               +KWNFT FLV +DG  + RF P     ++EK +
Sbjct: 238950 LVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 238849



 Score =  133 bits (335), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
 Frame = -1

Query: 2      SSVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQXGLTNKNYTQLKELLDVYKKDGLEVL 61
              SS+YDF V  ++     L  +KG  L+I NVAS+ G T   Y     L + YK  G  VL
Sbjct: 236987 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 62     AFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNE-KGGFMF 120
              AFPCNQFAGQEP  E ++++F   +FK E  + +K+ VNG+ + PL+ +LKN  KG    
Sbjct: 236807 AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGT 236628

Query: 121    DAIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDI 155
                +KWNFT FLV +DG  + RF P     ++EK +
Sbjct: 236627 TLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 236523



 Score =  133 bits (335), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
 Frame = -2

Query: 2      SSVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQXGLTNKNYTQLKELLDVYKKDGLEVL 61
              SS+YDF V  ++     L  +KG  L+I NVAS+ G T   Y     L + YK  G  VL
Sbjct: 234661 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 62     AFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNE-KGGFMF 120
              AFPCNQFAGQEP  E ++++F   +FK E  + +K+ VNG+ + PL+ +LKN  KG    
Sbjct: 234481 AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGT 234302

Query: 121    DAIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDI 155
                +KWNFT FLV +DG  + RF P     ++EK +
Sbjct: 234301 TLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKL 234197


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 89.7 bits (221), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 79/159 (49%)
 Frame = -3

Query: 1       MSSVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQXGLTNKNYTQLKELLDVYKKDGLEV 60
               M+SV+ ++    NG  V L  Y G   +IVNVAS+  L + N   L E+   Y      V
Sbjct: 1227184 MASVFTYSAVQ-NGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 61      LAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMF 120
               LAFPC QFA QEP    +I  +  D     P +F +++V G    PLF+ L+ ++G    
Sbjct: 1227007 LAFPCAQFANQEPLNNTEIAQWCEDLGLLFP-VFDRVNVKGSSADPLFQMLRAQQG---- 1226843

Query: 121     DAIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDIKEAL 159
                A  WN+TK+L  R G   ++  P      + + I+  L
Sbjct: 1226842 -APLWNYTKYLCDRSGVPRRKLEPGCSMDALRQSIECVL 1226729



 Score = 26.9 bits (58), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 84      ADKFKFEPTLFQKIDVNGDKQSPLFK 109
               A+ F   P+LF+ + +  DK+ P+FK
Sbjct: 2370535 ANAFARGPSLFKDVSLGSDKEPPVFK 2370458


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000083_1.0 # Protein # Glutathione peroxidase 5 (GPx5) #
Caenorhabditis elegans # Complete
         (119 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    28   1.2  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    27   2.8  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    26   5.3  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    25   9.7  

>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 28.5 bits (62), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 65     RGDENSMRKARTPWASYYEIEFA 87
              RGDE  + +ART W++  EI  A
Sbjct: 752455 RGDEKKIERARTEWSTTMEIRNA 752523


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 40     SSLFPIFSTVCGQDSINNFPNY 61
              SSL PI  TVCG+D  + FP +
Sbjct: 616202 SSLCPISRTVCGRDGAHAFPCF 616137


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 26.2 bits (56), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 93      DSANAGADLWRVACHVAARFLNCTT 117
               D+AN G  +WR  CH+      C+T
Sbjct: 1083249 DAANHGNVIWRQRCHLPTAHGGCST 1083323


>LmjF19_01_20050601_V5.2
             [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 25.4 bits (54), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = -3

Query: 21    WHFSKFQMISDARIGLYINSSLFPIFSTVCGQDSINNFPNYYIFRGDENSMRKARTPWAS 80
             WH   + +  D R G+ I+ SLF     +C   S + F +    +         RTP A 
Sbjct: 55227 WHMCVYVLALDLRKGIAISLSLFIAAVILCALSSFSLFISALPHKNSRAGGS*ERTPPAL 55048

Query: 81    YYEIEFAELG 90
             Y  +    +G
Sbjct: 55047 YACVTGTHIG 55018


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000084_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Caenorhabditis elegans # Complete
         (207 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    53   2e-07
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    31   0.74 
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    30   1.3  

>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 27/156 (17%)
 Frame = +3

Query: 6      RAYFGLQXFWGESAW--AKLKGVVVT-RVGYAGGKQPNP-TY----KNIKDHTEITEITF 57
              RA F    +WG   +     K  +V+ +VG+ GG +    TY    K    H E+ ++ +
Sbjct: 570102 RATFAAGCYWGTEHFFVRNFKDSIVSHQVGFMGGIEGKAVTYSEVTKGTTGHAEVLDLMY 570281

Query: 58     DPKVIEYSKLTNFFWKHHNPAERRKK------QYQSAILYVNDDQKKVAE---ETLKVAK 108
              DP+ + Y  L +FF++ HN     ++       Y+SAI Y N++QKK AE     L  A 
Sbjct: 570282 DPEKVSYKDLLSFFFRMHNSTTVNRQAGDIGTNYRSAIFYHNEEQKKEAEAYIAKLNGAD 570461

Query: 109    DK-HGDIE---------TYIEPLDKFYQAEDYHQKY 134
              +K H             T +E    FY A + HQ Y
Sbjct: 570462 EKLHSSFSKAFAGAPCITGLEKAGTFYPAHEGHQNY 570569


>LmjF35_01_20050601_V5.2
               [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.8 bits (68), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 1       MAYLERAYF--GLQXFWGESAWAKLKGVVVTRVGYAGGKQPNPTYKN 45
               +A L R  F  G +  WG +AW+  +G   TR G+    QP   Y N
Sbjct: 1384982 LASLHRPLFFAGTRSSWGYAAWSLARGGADTRAGFPCVCQPVLLYTN 1384842


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 30.0 bits (66), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
 Frame = -2

Query: 99     VAEETLKVAKDKHGDIETYIEPLDKFYQAEDYHQKYWFRQKKILFDELSLLDTQVAEGEL 158
              VA+E      D+H   +  +E +D+ ++A  + ++Y       + +ELS +    A G +
Sbjct: 671729 VAQEGRLQTADRHLGEQLSLEEVDQLWKAAQHRRRYPLPMPWFIAEELS-ISYDAAGGFV 671553

Query: 159    ATKLNAYCAGFQDFHDL---ERLAKEYGLKDSFVNKVKDY 195
                 +     G +DF  L     +A+ +G+K + V  + D+
Sbjct: 671552 KRIIQNAIKGIKDFDPLAIHREVARNWGVKVAAVVVLDDF 671433


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000057_1.0 # Protein # Selenoprotein 15 (Sel15) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    28   2.2  
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    27   4.3  

>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 28.5 bits (62), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 90     PQVQAFVHKDMARQFGGKVKVKHVRG 115
              P V+A+V +D   + GG++  KH RG
Sbjct: 547207 PHVRAYVGRDATAERGGQLCPKHARG 547130


>LmjF30_01_20050601_V5.2
               [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 27.3 bits (59), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 42      GLCERLSDYHLETLLTDCLQC 62
                LC+R S Y    L  DCLQC
Sbjct: 1241907 ALCQRQSHYVRHNLSDDCLQC 1241969


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000058_1.0 # Protein # Selenoprotein K (SelK) #
Caenorhabditis elegans # Complete
         (110 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    29   0.62 
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    28   0.96 
LmjF12_01_20050601_V5.2 [~/leish/curated/chr12/LmjF12_01_2005060...    28   1.1  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    28   1.2  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    27   1.7  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    27   1.9  
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    27   2.6  
LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    26   3.5  
LmjF08_01_20050601_V5.2 [~/leish/curated/chr8/LmjF08_01_20050601...    26   3.8  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    26   4.5  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    26   4.8  
LmjF10_01_20050601_V5.2 [~/leish/curated/chr10/LmjF10_01_2005060...    26   5.3  
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    25   6.7  

>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 28.9 bits (63), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = +3

Query: 57     RGGGVNGAGGGGNAYRRNGGGGGGGGRNIGGLPTSSGVAPPPMGGGCCGG 106
              RG G +G G     + RNGGG    G     LP       PP    C GG
Sbjct: 132297 RGEGPDGTGAAEGDHTRNGGGRDAAGVLHSHLPQHGAHRAPPAANRCGGG 132446


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 28.1 bits (61), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 57     RGGGVNGAGGGGNAYRRNGGGGGGGGRNIGGL 88
              R G +    GG +A RR GGGGG    +   L
Sbjct: 304505 RAGAILNKSGGTDADRRPGGGGGASDVDFASL 304410



 Score = 26.2 bits (56), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 78     GGGGGRNIGGLPTSSGVAPPPMGGGCCGGG 107
              GG   ++  G+P++SG APP    G   G 
Sbjct: 575405 GGAPAQSPDGVPSASGTAPPAASDGADTGA 575316



 Score = 26.2 bits (56), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 77    GGGGGGRNIGGLPTSSGVAPPPM 99
             G GGG +   GL TSSGV  PP+
Sbjct: 30501 GEGGGAK---GLVTSSGVVWPPL 30560


>LmjF12_01_20050601_V5.2
              [~/leish/curated/chr12/LmjF12_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 675347

 Score = 28.1 bits (61), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 38     GFTSPTNRNSNSQDYRNIVRGGGVNGAGGGGNA 70
              GF++P+   S   +YR + RGG  +    G +A
Sbjct: 184051 GFSAPSMPTSTKAEYRGLRRGGAPSAGALGSDA 183953


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 66      GGGNAYRRNGGGGGGGGRNIGGLPTSSGVAPPP 98
               G G A   +  GG     N+GG P+SS  AP P
Sbjct: 1742537 GNGAAAAESARGG-----NVGGTPSSSTTAPAP 1742620



 Score = 25.8 bits (55), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 57      RGGGVNGAGGGGNAYRRNGGGGGGGGRNIGGLPT 90
               R G +  + GG NA R +GGG       +   PT
Sbjct: 1779769 RSGSLERSTGGANAVRNSGGGTTDSAGALSSSPT 1779870


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 27.3 bits (59), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +2

Query: 88     LPTSSGV--APPPMGGGCC---GGGGXG 110
              LP +S +  APPP+GGG C   G  G G
Sbjct: 108230 LPFASFILAAPPPLGGGACVSPGSCGNG 108313



 Score = 27.3 bits (59), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
 Frame = -2

Query: 66      GGGNAYRRNGGGGGGGGRNIGGLPTS-------SGVAPPP 98
               GGGN Y   GG G  G   I   P +        G A PP
Sbjct: 1349076 GGGNVYNGRGGSGASGNPTIHKTPPAPVYQDPHRGAALPP 1348957



 Score = 26.2 bits (56), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 69     NAYRRNGGGGGGGGRNIGGLPTSSGVAPPPMGGGCCGG 106
              N ++   G      +   G PTS GVA P +G    GG
Sbjct: 417342 NTHQVGSGAQSKAAQRTAGAPTSLGVADPRIGSRNRGG 417455


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 27.3 bits (59), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -3

Query: 76      GGGGGGGRNIGGLPTSSGVAPPPMG----GGCCG 105
                GGG G R+ GG  +++   PPP        CCG
Sbjct: 1124416 AGGGTGSRHAGGSSSAATALPPPFAEVRQTRCCG 1124315


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 26.9 bits (58), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
 Frame = +2

Query: 42     PTNRNSNSQDYRNIVRGGGVNGAGGGGNAYRRNGG--------GGGGGGRNIGG 87
              P  R S S D  + V+GG        GNA    GG        GGGG  R  GG
Sbjct: 471086 PHLRPSASVDTLSSVKGGSTEPGDRAGNASSPVGGFSSIATLAGGGGAPRLTGG 471247


>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 26.2 bits (56), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 62     NGAGGGGNAYRRNGGGGGGGGRNIGG 87
              N   GGGNAYR       GGG NIG 
Sbjct: 109930 NSGYGGGNAYRV------GGGNNIGA 109989



 Score = 25.4 bits (54), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 86     GGLPTSSGVAPPPMGGGCCG 105
              GG P SS + PPP    C G
Sbjct: 357161 GGTPRSSALLPPPPEADCVG 357102



 Score = 25.0 bits (53), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
 Frame = +2

Query: 63    GAGGGGNAYRRN-------GGGGGGGGRNIGGLPTSSGVAPP 97
             G GGGG A  ++        GG GGG  N     + SG  PP
Sbjct: 94490 GPGGGGAAMVKSLTVVVNPCGGRGGGELNSTWDKSLSGTGPP 94615


>LmjF08_01_20050601_V5.2
              [~/leish/curated/chr8/LmjF08_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 574972

 Score = 26.2 bits (56), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = -2

Query: 42     PTNRNSNSQDYRNIV----RGGGVNGAGGGGNAYRRNGGGG-GGGGRNIGGLPTSSGVAP 96
              P  R++NS   R I     R      A    N    +G G   G G  +GG PT+S  +P
Sbjct: 444975 PRQRSANSGGARAIADVPARASPTATAAKCDNGLNTSGDGPREGQGATVGGTPTTSSTSP 444796

Query: 97     PPMGGG 102
                +  G
Sbjct: 444795 LAVAQG 444778


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 26.2 bits (56), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 39     FTSPTNRNSNSQDYRNIVRGGGVNGAGGGGNAYRRNGGG 77
              F SPT R+ + Q  R + R       GGGG+++     G
Sbjct: 836319 FASPTPRSIDHQHSRTMHRHAHDLRGGGGGSSHTERKAG 836203


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 25.8 bits (55), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 40      TSPTNRNSNSQDYRNIVRGGGVNGAGGGGNAYRR 73
               T+   R+S+  +     R   + GAGGG N Y+R
Sbjct: 1389057 TAARRRHSSYSNSPYTARS*AIRGAGGGSNRYQR 1389158


>LmjF10_01_20050601_V5.2
              [~/leish/curated/chr10/LmjF10_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 570864

 Score = 25.8 bits (55), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 63     GAGGGGNAYRRNGGGGGGGGRNIGGLPTSSGVAPPPMGGGCCG 105
              G  GG + +RR  G   GG R+  G      + PPPM  G CG
Sbjct: 368435 GESGGCSRHRRRVGERDGGVRDSAG-----ALVPPPMCRGRCG 368322


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 25.4 bits (54), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 41     SPTNRNSNSQDYRNIVRGGGVNGAGGGGNAYRRNGGGGGGGGRNIGGLPTSS 92
              +P N  ++     +  R  G + + G G A+R   G G G   + GG+PTSS
Sbjct: 345358 APLNIPNSGSGVGDAGRLTGWSSSQGSGAAHR---GNGHGSSMSAGGVPTSS 345504


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    87   6e-18
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    28   3.1  
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    28   3.3  
LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    28   3.6  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    28   3.7  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    27   4.9  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    27   8.1  

>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 86.7 bits (213), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/128 (36%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
 Frame = +3

Query: 23      KDVKQTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWA 82
               KD+   EW+ +L  + Y + RE GT+ P  G ++D F++G YVC  C + L+ S  KF  
Sbjct: 1031724 KDMSDEEWRRILTAQEYHILREKGTD-PVGGKYDDVFDEGEYVCAGCKTPLYLSSMKFAC 1031900

Query: 83      GCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVF-NDGPKE-TTGERYX 140
               GCGWP F + + +   +    DR     R E+ C  C++HLGHVF  +G +     ER+ 
Sbjct: 1031901 GCGWPGFYDCIPK--RVREQPDRDG--RRVEIVCNVCNSHLGHVFRGEGFRNPPPNERHC 1032068

Query: 141     INSVCMAF 148
               +NS  + F
Sbjct: 1032069 VNSTSIIF 1032092



 Score = 26.6 bits (57), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 35     PNEVYRVARESGTETPHTGGFNDHFEKGRYVCLC 68
              P  +    R+  +  P  GG+   +++G+ VC C
Sbjct: 206947 PTPLESCGRKEASSAPGCGGYRLRYQRGQSVCWC 207048



 Score = 26.6 bits (57), Expect = 8.5,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
 Frame = -2

Query: 55     FNDHFEKGRY--VCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRT 112
              F +++EK +   + +CC                WP   E V    ++V   D   G+H T
Sbjct: 174225 FQEYYEKAKSNSIMICCSV--------------WPKVVERVSSHLDLVTAEDSPAGLHGT 174088

Query: 113    EVRCKTCDAHLGHVFNDGPKETTGERYXI 141
              E     C   L  + N  P++     Y I
Sbjct: 174087 EASFDLC---LQQIMN-APRQGVPGTYHI 174013


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 27.7 bits (60), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 65      VCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANI 99
               VC+C    LF S   +W GCGW   S   G+DA +
Sbjct: 1489434 VCMCMRLVLF-SLLVYWIGCGWVVVS---GKDAPV 1489526



 Score = 27.7 bits (60), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 65      VCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANI 99
               VC+C    LF S   +W GCGW   S   G+DA +
Sbjct: 1494008 VCMCMRLVLF-SLLVYWIGCGWVVVS---GKDAPV 1494100


>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 82     AGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDA 121
              A CGW AF++  G      RI   + G+  T   C T DA
Sbjct: 328735 AACGWIAFADPAGCQRGH*RICCVARGITDTREACSTPDA 328616


>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 27.7 bits (60), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
 Frame = +3

Query: 73     LFNSDAKFWAGCGWPAFSESVGQDANI------VRIVDRSHGMHRTEVRCKTC 119
              LF S    W GC W      VG  +        V  V  +H MHR+      C
Sbjct: 581943 LFTSADPRWCGC*WGTHVARVGPSSPFLLLHKSVHYVAAAHSMHRSPFSASLC 582101


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 27.7 bits (60), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 30     WKSVLPNEVYRVARESGTETPHTGGFNDHFEKGR 63
              W+++ P +  R  R SGT  P     + HF   R
Sbjct: 562564 WRALAPRQSARSTRPSGTGRPPATARSPHFSSAR 562463


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 27.3 bits (59), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 88     AFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGH 125
              A    V +   + RIV + H + R +V       HLGH
Sbjct: 446705 AVEGDVARHIRVARIVSKVHRLQRVQVHLAVFARHLGH 446592



 Score = 26.9 bits (58), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +2

Query: 106    SHGMHRTEVRCKTCDAHLGHVFNDGPKET 134
              +H   R    CK C  H+G +    P+ +
Sbjct: 399827 AHAQKRQRTPCKACSRHVGLILRSAPRAS 399913


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 26.6 bits (57), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 67      LCC-GSELFNSDAKFWAGCGWP 87
               +CC G    ++   +WAGC WP
Sbjct: 1147659 MCCQGHTTCSAKKNYWAGCTWP 1147724


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000060_1.0 # Protein # Selenoprotein T1 (SelT1) #
Caenorhabditis elegans # Complete
         (258 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    47   2e-05
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    30   1.7  
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    29   4.1  
LmjF17_01_20050601_V5.2 [~/leish/curated/chr17/LmjF17_01_2005060...    28   5.4  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   5.5  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    28   7.4  

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
 Frame = +3

Query: 98     LRIFYCVSXGYKQAFDQFTTFAKEKYPN---MPIEGANFAPVLWKAYVAQALSFVKMAVL 154
              L + YC   GY + F+      +   PN   + I G  +     +A  A+  S   +A L
Sbjct: 510333 LEVLYCTG*GYAKYFEDMKQQLQHTLPNAQEVRIVGGTYPTPPARALAAKVCSTAFLASL 510512

Query: 155    VLVLGGINPFERFGLGYPQILQHAHGNKMSSCMLVFMLGNLVEQSLISTGAFEVYLGNEQ 214
               + L G    ++     P +L      +       F+L N++  +L  TGAFEV L  E 
Sbjct: 510513 GVALAG----QQLVFLPPTVLNFIAQQRGMLIGAGFLL-NMIGGALGQTGAFEVSLDGEL 510677

Query: 215    IWSKIESGRVPSPQEFMQLI 234
              I+SK+++G VP+  E  +++
Sbjct: 510678 IFSKLQAGAVPAVAEIRRIV 510737



 Score = 30.0 bits (66), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 125    NMPIEGANFAPVLWKAYVAQ 144
              ++P+ G  F PVLW++YV++
Sbjct: 388451 SLPVSGQAFFPVLWRSYVSR 388392


>LmjF30_01_20050601_V5.2
               [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 30.0 bits (66), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +1

Query: 33      RTVSAEEHSHDENHVHEKDDFEAEFGDETDSQSFSQG--TEEDHI--EVREQSSFVKPTA 88
               R V+   H+HD  +  E    + E GD+ +++S  +G  T+E  +  + R Q+SF     
Sbjct: 1013641 RAVNRSAHTHDIKYSAESVTKQREDGDKRETRSQGRGWQTKEASVCPKARLQTSFRTTAY 1013820

Query: 89      VHH 91
                HH
Sbjct: 1013821 THH 1013829


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 28.9 bits (63), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 59      DETDSQSFSQGTEEDHIEVREQSSFVKPTAVHHAKD 94
               DE  S + + G E  H+E R QS     TAVH   D
Sbjct: 1811099 DENTSDAANFGVECKHVEARRQSEGSAVTAVHRVVD 1811206


>LmjF17_01_20050601_V5.2
              [~/leish/curated/chr17/LmjF17_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 684831

 Score = 28.5 bits (62), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = -3

Query: 27     SVCDVLRTVSAEEHSHDE-----NHVHEKDDFEAEFGDETDSQSFSQGTEEDHIEVREQS 81
              S+C  L T+ +  H H        H     DF     DE  SQS SQ      I +    
Sbjct: 208138 SLCGFLLTLVSRYHRHSHMMSRLPHFRSDSDFHR---DEESSQSMSQVRARPAIRLDTSL 207968

Query: 82     SFVKPTAV 89
              SF+  T++
Sbjct: 207967 SFISTTSI 207944


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 28.5 bits (62), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 103    CVSXGYKQAFDQFTTFAKEKYPNMPIEGANFAPVLWKAYVAQALSFVKMAVLVLVLGGI 161
              C +   ++  D FT   K  + +   +   FAPVL  AYVA  +      V   V GG+
Sbjct: 287625 CSAGSTRRRLDVFTRTPKYTHTHTLTQERGFAPVLPSAYVAICICIRVCRVTGAVCGGV 287801


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 28.1 bits (61), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 27     SVCDVLRTVSAEEHSHDENHVHEKDDFEAEFGD--ETDSQSFSQGTEEDHIEVREQS 81
              +V  VLR + A EH  +   +  K + +   G   E + +   QG  +DH  VR ++
Sbjct: 578848 AVPHVLRNIDAAEHGEETRRLPYKAELQPHVGQHVEQEVRLLQQGHPKDHEGVRAEA 578678



 Score = 27.7 bits (60), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 31     VLRTVSAEEHSHDENHVHEKDDFEAEFGD--ETDSQSFSQGTEEDHIEVREQS 81
              VLR + A EH  +   +  K + +   G   E + +   QG  +DH  VR ++
Sbjct: 585591 VLRNIDAAEHGEETRRLPYKAELQPHVGQHVEQEVRLLQQGHPKDHEGVRAEA 585433



 Score = 27.7 bits (60), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 31     VLRTVSAEEHSHDENHVHEKDDFEAEFGD--ETDSQSFSQGTEEDHIEVREQS 81
              VLR + A EH  +   +  K + +   G   E + +   QG  +DH  VR ++
Sbjct: 582214 VLRNIDAAEHGEETRRLPYKAELQPHVGQHVEQEVRLLQQGHPKDHEGVRAEA 582056


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000061_1.0 # Protein # Selenoprotein T2 (SelT2) #
Caenorhabditis elegans # Complete
         (216 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    40   0.001
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    28   3.5  

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 40.0 bits (92), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 6/143 (4%)
 Frame = +3

Query: 72     LTILYCVSXGYKQAFNQFYEFAKEKYPG---LVIEGGNFSPDFWKGCLAQIVGVAKIGLI 128
              L +LYC   GY + F    +  +   P    + I GG +     +   A++   A +  +
Sbjct: 510333 LEVLYCTG*GYAKYFEDMKQQLQHTLPNAQEVRIVGGTYPTPPARALAAKVCSTAFLASL 510512

Query: 129    AIVITGSNPFEYIGFGYPQILQTAHYNR---FSYSLLVFMIGNLFESTLSSTGAFEIFLG 185
               + + G    + + F  P +L      R        L+ MIG      L  TGAFE+ L 
Sbjct: 510513 GVALAG----QQLVFLPPTVLNFIAQQRGMLIGAGFLLNMIG----GALGQTGAFEVSLD 510668

Query: 186    DKQIWSKISKERVPTQEEFLNLI 208
               + I+SK+    VP   E   ++
Sbjct: 510669 GELIFSKLQAGAVPAVAEIRRIV 510737


>LmjF31_01_20050601_V5.2
             [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 28.5 bits (62), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -2

Query: 11    LFFIASIFDVFRAEKEPPAEDSRLEDYLSSELETTAIPTVVNENSHSQDVVDSGFSKDLP 70
             LF  A I D+  A  +PP E+SR+++     L+    P  +    H Q +V++  +  + 
Sbjct: 65653 LFPAAQITDL-PAYSQPPIENSRIDELSLHCLQVVNNPVAIFSLCHGQPLVEA-ITSSMN 65480

Query: 71    KLTILYCV 78
              LT L C+
Sbjct: 65479 MLTQLGCI 65456


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000062_1.0 # Protein # Selenoprotein U (SelU) #
Caenorhabditis elegans # Complete
         (219 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF27_01_20050601_V5.2 [~/leish/curated/chr27/LmjF27_01_2005060...    29   2.5  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    29   3.0  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    27   9.6  

>LmjF27_01_20050601_V5.2
              [~/leish/curated/chr27/LmjF27_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1130447

 Score = 29.3 bits (64), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -1

Query: 10     AALGGALVYANLPTYLTIGAVAPTF------AHLAAAKLVPIRGGPKEKEVVERN 58
              AAL G +    LP  L    V P+       A   AAK++  RGGPK K +VER+
Sbjct: 410231 AALSGWMAVGELPRSL*GLRVVPSLRYFFFCADWQAAKMMRQRGGPK*KGLVERS 410067


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 28.9 bits (63), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 41     KLVPIRGGPKEKEVVERNEQFTADSLFKKGPIMVMAVRRPGXMLCRREAAEL--HTLLPL 98
              +LVP    P+   + + + +  +    + GP  VMA+R P     R +AAE   H  +PL
Sbjct: 548568 ELVPFACAPQMALMQQGHPRLRSPGRGRVGPAAVMAIRAPASTGTR*DAAECSGHVRVPL 548747


>LmjF25_01_20050601_V5.2
             [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 27.3 bits (59), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 14    GALVYANLPTYLTIGAVAPTFAHLAAAKLVPIRGGPKEKEVVERN 58
             G+ V++    Y   GA   TFAH +A+    +RG P  K  V R+
Sbjct: 99495 GSSVFSTCSMYCVAGA-RTTFAHTSASPTPRLRGPPSLKRFVSRS 99626


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000063_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Caenorhabditis elegans # Complete
         (667 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF05_01_20050601_V5.2 [~/leish/curated/chr5/LmjF05_01_20050601...   218   1e-56
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...   128   1e-29
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    64   4e-10
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    59   2e-08
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    44   6e-04
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    35   0.24 
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    35   0.25 
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    33   0.65 
LmjF20_01_20050601_V5.2 [~/leish/curated/chr20/LmjF20_01_2005060...    33   0.92 
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    32   1.5  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    31   3.5  
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    31   3.6  

>LmjF05_01_20050601_V5.2
              [~/leish/curated/chr5/LmjF05_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 465823

 Score =  218 bits (556), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 151/493 (30%), Positives = 243/493 (49%), Gaps = 11/493 (2%)
 Frame = +1

Query: 168    LRDHTYDLIVIGGGSGGLAAA-KEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIP 226
              L    YDL+V+G GSGGL A    A+   KKVA +D            LGGTCVNVGC+P
Sbjct: 105664 LMSRAYDLVVLGAGSGGLEAGWNAAATYKKKVAVVDVQATHGPPFFAALGGTCVNVGCVP 105843

Query: 227    KKLMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLRE-KT 285
              KKLM   +     I ++  +GW++    +   W  L  +    +  +N  Y+    + + 
Sbjct: 105844 KKLMVTGAQYMDLIRESGGFGWEMNRESLCPNWKTLIAAKNKVVNGINESYKSMFADTEG 106023

Query: 286    VTYINSYGEFTGPFEI----SATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYTITS 341
              +++   +G       +    S       +E L  +  LI+TG  P    +PG  E+ ITS
Sbjct: 106024 LSFHMGFGALQDAHTVLVRKSEDPNSDVLETLDTEYILIATGSWPTRLGVPG-DEFCITS 106200

Query: 342    DDLFQLPYSPGKTLCVGASYVSLECAGFLHGF---GFDVTVMVR-SILLRGFDQDMAERI 397
              ++ F L  +P + LCVG  Y+++E AG  +G+   G  V +  R  ++LRGFD ++ + +
Sbjct: 106201 NEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPRGGYVDLCYRGDLILRGFDTEVRKSL 106380

Query: 398    RKHMIAYGMKFEAGV-PTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILM 456
               K + A G++    + PT+I      T  + G   V +    EE         +Y+ +++
Sbjct: 106381 TKQLGANGIRVRTNLNPTKI------TKNEDGSNHVHFNDGTEE---------DYDQVML 106515

Query: 457    AIGREAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAG 516
              AIGR   +  + L   GV+ AK+  V       T++  +YAIGDV      LTPVAI  G
Sbjct: 106516 AIGRVPRSQTLQLDKAGVQTAKNGAVQVDAYSKTSVDNIYAIGDVTNRV-MLTPVAINEG 106692

Query: 517    RVLMRRIFDGANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLE 576
                    +F G    T++ ++   VF+    G CG++EE+A   +  + + +Y + F PL 
Sbjct: 106693 AAFAETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNH--ETVAVYESCFTPLM 106866

Query: 577    YTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLI 636
              + IS    K+  ++  I       +V+G H+L  +A E+ Q  GI +K+ AK +DF   I
Sbjct: 106867 HNISGSKHKE--FMIRIITDQPSGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFHNTI 107040

Query: 637    GIHPTVAENFTTL 649
              G+HPT AE   ++
Sbjct: 107041 GVHPTSAEELCSM 107079


>LmjF32_01_20050601_V5.3
               [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score =  128 bits (322), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 122/483 (25%), Positives = 214/483 (44%), Gaps = 10/483 (2%)
 Frame = +1

Query: 172     TYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMH 231
               +YD+ VIGGG GG  AA +A++LG K AC++            LGGTC+NVGCIP K + 
Sbjct: 1324450 SYDVTVIGGGPGGYVAAIKAAQLGLKTACIE--------KRGALGGTCLNVGCIPSKALL 1324605

Query: 232     QASLLGHSIH-DAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYIN 290
                A+ L H  H +  +YG +  E  V    + ++      + +L  G     ++  VTY  
Sbjct: 1324606 HATHLYHDAHANFAQYGLRGGE-NVTMDVSAMQAQKGKGVKALTGGVEYLFKKNKVTYYK 1324782

Query: 291     SYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRP-KYPEIPGVKEYTITSDDLFQLPY 349
                 G F  P  I       K E L + + +++TG  P + P +P  ++  ++S     L +
Sbjct: 1324783 GEGSFVNPNTIKVKGLDGKEETLESKKTIVATGSEPTELPFLPFDEKVVMSSTGALDLDH 1324962

Query: 350     SPGKTLCVGASYVSLECAGFLHGFGFDVTVM-VRSILLRGFDQDMAERIRKHMIAYGMKF 408
                P K + VG   + LE        G +VTV+   S      D D+++ +   ++ +  K 
Sbjct: 1324963 VPKKMIVVGGGVIGLELGSVWARLGAEVTVVEFASRCAATTDADVSKALTDALVKH-EKM 1325139

Query: 409     EAGVPTRI-------EQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGRE 461
               +    T++         +  + ++K GK++                  E + +L ++GR 
Sbjct: 1325140 KIMTNTKVVSGTNNGSSVTIEVEDKDGKHQTL----------------EADALLCSVGRR 1325271

Query: 462     AVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMR 521
                 T  +    I ++  +    +    + T +P VYAIGDV+   P L   A + G V   
Sbjct: 1325272 PHTTGLNAEAINLQMERGFICINDHFE-TNVPNVYAIGDVVNKGPMLAHKAEEEG-VACA 1325445

Query: 522     RIFDGANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISE 581
                I  G      Y  IP  ++T  E    G +EE  + K G D  +     F     + ++
Sbjct: 1325446 EILAGKPGHVNYSVIPGVIYTNPEVAQVGETEEQ-VKKRGIDYKV---GKFPFSANSRAK 1325613

Query: 582     RMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPT 641
                +  +  ++K++  + + ++++G  I+   AGE+     +A++  A   D  R    HPT
Sbjct: 1325614 AVGTEDGFVKVVTDK-KTDRILGVQIVCTAAGEMIAEPTLAMEYGASSEDLGRTCHAHPT 1325790

Query: 642     VAE 644
               ++E
Sbjct: 1325791 MSE 1325799


>LmjF31_01_20050601_V5.2
               [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 146/357 (40%), Gaps = 16/357 (4%)
 Frame = -3

Query: 277     YRVQLREKTVTYINSYGEFTGPFEISA-TNKKKKVEKLTADRFLISTGLRPKYPEIPGVK 335
               YR  L    V  I     F  P EI   T    +   L AD  +I+TG  P+        
Sbjct: 1279056 YRAFLEASGVQLIEGKATFANPNEIDVHTEGTGEYRSLQADNVVIATGAIPRSHAFAKCD 1278877

Query: 336     EYTI-TSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSI--LLRGFDQD 392
                  I  S  LF++P  P   + +GA  +  E A      G     +V     +L   D+D
Sbjct: 1278876 HNRILNSTSLFEMPI-PASMVVIGAGAMGCEVASMFAKLGRTKVRLVDKAPRILPKEDED 1278700

Query: 393     MAERIRKHMIAYGMKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYN 452
               +A  +++H+I  G+    G            D +AG+    +  ++  +G+++    E  
Sbjct: 1278699 VASYVQRHLIRRGVVIHQGC--------RLFDLEAGEEDCRYSLRDIFSGDIETYHAE-- 1278550

Query: 453     TILMAIGREAVTDDVGLTTIGVERAKSKKVLGR---REQSTTIPW--VYAIGDVLEGTPE 507
                 ++A+GR+       L  +G+E  K +   G+    E     P+  +Y IGD   G  +
Sbjct: 1278549 RAMVAVGRQP-----NLGALGLENTKMRVENGQLDCDEYGRCKPYKHIYCIGDA-TGRQK 1278388

Query: 508     LTPVAIQAGRVLMRRIFDGANELTEYD----QIPTTVFTPLEYGCCGLSEEDAMMKYGKD 563
                   A  AG+ ++  +F  + +L   +     I T +F   E    GLSE     K  + 
Sbjct: 1278387 TVNTAQTAGQAVVDTMFGCSPKLAVSNNALTNIATDMFLEDEVASIGLSE-----KQCRA 1278223

Query: 564     NIIIYHNVFNPLEYTISER---MDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQ 617
               + I Y  +   LEY    R   M     ++KMI   + E++V+G   + P+AG V +
Sbjct: 1278222 SGIGY--IVARLEYKHLTRPIVMGAKDGFVKMIVTNDREKRVLGVRAVGPHAGSVVE 1278058



 Score = 35.8 bits (81), Expect = 0.10,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 142/371 (38%), Gaps = 19/371 (5%)
 Frame = -2

Query: 295     FTGPFEISATNKK-KKVEKLTADRFLISTGLRP-KYPEIPGVKEYTITSDDLFQLPYSPG 352
               F+   EI   +K+ K+   +TAD F+++TG +P K+P +       +TSD + + P  P 
Sbjct: 1282510 FSSNHEIQCHSKRTKEFRSITADYFIVATGSKPRKHPYVAADGRLVMTSDHIMRAPL-PK 1282334

Query: 353     KTLCVGA-----SYVSLECAGFLHGFGFDVTVMVRSILLRGFDQDMAERIRKHMIAYGMK 407
                 + VGA      + S+   G L      +      IL R  D D+   I   M   G+ 
Sbjct: 1282333 SLVIVGAGVIGCEFASI--IGRLGKTKVSIIDKAPHILPRE-DPDIVRMIESGMDRAGIV 1282163

Query: 408     FEAGVPTRIEQIDEKTDEKAGKYRVF--WPKKNEETGEMQEVSEEYNTI-----LMAIGR 460
                         Q  E+T E+A         P+   +   M   + +  T      L++IGR
Sbjct: 1282162 VHHNSDLYDMQPWEETVEEAKARHPADPAPQSGVQYTVMDRTTRKLTTFQVERALISIGR 1281983

Query: 461     EAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLM 520
                     +G+    ++   S+  +    Q    P ++A+GD      +L  +     ++ +
Sbjct: 1281982 VPDYSRLGIENTTLKTRGSQLHVNEFGQCVGTPHIFAVGDAATHM-QLVSMGEAQAKLAV 1281806

Query: 521     RRIFDGANELTE--YDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYT 578
                 I+    ++     + + +  F        G +E        ++  I Y  +     Y 
Sbjct: 1281805 DYIYGTEPKVVPNLTETMSSVAFLTRAVASVGYNESQC-----REKGIAY--IAARYSYE 1281647

Query: 579     ISER---MDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFDRL 635
               +  R         ++K+IC  + E +++G   L  NA  +     +A++      D    
Sbjct: 1281646 VVSRAVAAANTKGFVKIICADDPERRILGVRALGMNASTLVDIGALAIQNGQGVFDLAGR 1281467

Query: 636     IGIHPTVAENF 646
               +  +P V++ F
Sbjct: 1281466 LTAYPAVSQAF 1281434


>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 114/493 (23%), Positives = 203/493 (41%), Gaps = 13/493 (2%)
 Frame = -2

Query: 167    WLRDHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIP 226
              W R     + V+GGG  G+AAA  A  LGKK AC+  ++ S  G     G    N     
Sbjct: 818572 WTRKFD--VCVLGGGPAGIAAAVRAYELGKK-ACI--IEESRIG-----GADFWNGALQS 818423

Query: 227    KKLMHQASL----LGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLR 282
              K L   A      +G++ H   K   +LP  K++H  ++L  ++ +   +        L 
Sbjct: 818422 KTLWEMAKFARYTMGNTSHRFMKSVIELP--KIKH--SNLIKAITNAAETRETQTLEVLA 818255

Query: 283    EKTVTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPK-YPEIPGVKEYTITS 341
                 +  ++  G F  P  ++ T K    E + AD F+I+TG  P+ +P      +   TS
Sbjct: 818254 NAHIEVLSGLGSFKTPNSVAVTKKDGTEETVEADYFVIATGAHPRPHPTAVADGKVVFTS 818075

Query: 342    DDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGF-DVTVMVRS-ILLRGFDQDMAERIRK 399
              DD+   P  P   + +GA  +  E A     FG   V ++ +S  +L   D+D+A  ++ 
Sbjct: 818074 DDIMMQPL-PKSIVIIGAGVIGCEFASIFANFGVTQVNIIEKSGRILPMEDEDIALFVQT 817898

Query: 400    HMIAYGMKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIG 459
               +   G+ F          I++      GK+  +  +   +    Q V++   + L++IG
Sbjct: 817897 LLEQKGVCFHHHSAMESSSIND------GKFH-YTLRDVRDNSLHQHVTD---SALVSIG 817748

Query: 460    REAVTDDVGLTTIGVERAKSKKVLGRREQSTTIP--WVYAIGDVLEGTPELTPVAIQAGR 517
              R      + L  IG+    ++  + R E     P   +YA GD       L  VA   GR
Sbjct: 817747 RVPAISKLNLEAIGITVKGNR--IDRDEFLRIEPHKHIYACGDTCTRVA-LVNVAELEGR 817577

Query: 518    VLMRRIFDGANELT---EYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNP 574
                +  ++    E     + D + T +F   E    GL+E+       +   I Y      
Sbjct: 817576 ACIDHMYTPYPEEQLKLKLDNLSTIMFLDQEVAAVGLNEQQC-----QKMSISYKMARYS 817412

Query: 575    LEYT-ISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIALKLAAKKADFD 633
               EY   +  M     ++K++   +++ +V+G   + P+A  + +   +A+       D  
Sbjct: 817411 YEYVGRALAMGNTRGFIKLVVTNDKKMQVLGVRAVGPHASSIIELASLAIHNRDSAYDLR 817232

Query: 634    RLIGIHPTVAENF 646
               L  ++P + + F
Sbjct: 817231 NLHAVYPAITQGF 817193


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = +3

Query: 135    TLHTSWPLMYIKGNAVGGLKELKALKQDYLKEWLR------DHTYDLIVIGGGSGGLAAA 188
              T HT +   YI  N  G     + L++ + +  L       DHTYD +V+G G  GL AA
Sbjct: 610614 T*HTQYTHTYIYINIKG--SSARMLRRTFTRLALSRAYPVIDHTYDCVVVGAGGSGLRAA 610787

Query: 189    KEASRLGKKVACLDFVKPSPQGTSWGLGG 217
                 +  G  VAC+  + PS   T    GG
Sbjct: 610788 MGVAASGYDVACISKLYPSRSHTIAAQGG 610874


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 712926 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 713042



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 720480 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 720596



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 735286 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 735402



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 742886 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 743002



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 750415 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 750531



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 765493 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 765609



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 773035 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 773151



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 788107 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 788223



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 795660 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 795776



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 803202 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 803318



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 810741 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 810857



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 825564 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 825680



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 833112 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 833228



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 840647 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 840763



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 848194 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 848310



 Score = 34.7 bits (78), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 863266 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 863382



 Score = 34.7 bits (78), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 727745 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 727861



 Score = 34.7 bits (78), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 757944 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 758060



 Score = 34.7 bits (78), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 780568 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 780684



 Score = 34.7 bits (78), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 818024 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 818140



 Score = 34.7 bits (78), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 855734 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 855850



 Score = 30.0 bits (66), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 21     SSPANPHVSDTLSMGVAASGMPPPKRPAPAESPTLPGETLVDAP 64
              ++PA PH   T S G A +G PP +R        LP      +P
Sbjct: 550582 AAPAGPHSMCTHSRGTAPAGRPPGRRGGSCGCARLPAVVSSTSP 550713


>LmjF36_01_20050601_V5.2
              [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 34.7 bits (78), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 484    GRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRR 522
              GRRE +  +PW  ++G+ L+G PEL    +   R  +RR
Sbjct: 472649 GRREHTLLLPWPGSLGEGLDGCPELMAPLLPPVRAQVRR 472533


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 33.1 bits (74), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +3

Query: 20     ASSPANPHVSDTLSMGVAASGMPPPKRPAPAESPTLPGETLVDAP 64
               SSPA+   SD  +  +  S  PPP    PA S T P     D P
Sbjct: 112884 GSSPADGSFSDLTAADIYGSLQPPPALSLPARSETSPSHRTKDNP 113018


>LmjF20_01_20050601_V5.2
              [~/leish/curated/chr20/LmjF20_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 742551

 Score = 32.7 bits (73), Expect = 0.92,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +2

Query: 173    YDLIVIGGGSGGLAAAKEASRLGKKVACLD 202
              +DL+VIGGG  GL  A +A++ G +VA +D
Sbjct: 164033 FDLLVIGGGLTGLYTAVDAAQRGLRVALVD 164122


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 32.0 bits (71), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 11     FKRQPRQQEASSPANPHVSDTLSMGVAASGMPPPKRPAPAESPTLPGETLV 61
              ++R   ++  +S A P  S  +S  V    +PPP+R  P  +PT  G  LV
Sbjct: 371209 WRRSVHRRSTASTAPPPASAAMSRSV----LPPPRRGVPDPAPTRRGSALV 371069


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 30.8 bits (68), Expect = 3.5,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 34/78 (43%)
 Frame = -1

Query: 15     PRQQEASSPANPHVSDTLSMGVAASGMPPPKRPAPAESPTLPGETLVDAPGIPLKEALKE 74
              PRQ     P  PH+SD +    A S  P P         TL  +TL +AP  PL+     
Sbjct: 920197 PRQ----CPKQPHISDPVGESAADSSTPRPLH-------TL--DTLQNAPVHPLEHVHVA 920057

Query: 75     AANSKIVIFYNSSDEEKQ 92
               A S +   + S+D  +Q
Sbjct: 920056 VAGSNVP*LWQSTDGCEQ 920003


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 30.8 bits (68), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +3

Query: 12     KRQPRQQEASSPANPHVSDTLSMGVAASGMPPPKRPAPAESPTLPGETLVDAPGIPLKEA 71
              +R  +Q     PA  H+S TL+    +   PP    AP   P++P   L DA   P ++ 
Sbjct: 523005 RRDSKQLLRRQPAR-HLSITLARTCPSKSQPPRMDAAPLRPPSVP---LCDADQHPAQKP 523172

Query: 72     LKEAANSKI 80
              L+  A+ ++
Sbjct: 523173 LQRIASRRL 523199


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000093_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Saccharomyces cerevisiae # Complete
         (167 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   107   3e-24
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    77   6e-15
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    27   6.0  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  107 bits (268), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
 Frame = -3

Query: 5      YSFSPIDENGNPFPFNSLRNKVVLIVNVASHXAFTPQ-YKELEYLYEKYKSHGLVIVAFP 63
              Y F     +  P+     +   +LI NVAS   FT   Y+    LY KYK  G +++AFP
Sbjct: 239304 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 239125

Query: 64     CGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSGKSGIKMI 123
              C QF  QE   ++E+  F   ++   FPI+ K+  NG+ + P+Y +LKN+  G  G  ++
Sbjct: 239124 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLV 238945

Query: 124    KWNFEKFVVDRNGKVVKRFS 143
              KWNF  F+VD++G  V RF+
Sbjct: 238944 KWNFTAFLVDKDGHAVCRFA 238885



 Score =  105 bits (263), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
 Frame = -2

Query: 5      YSFSPIDENGNPFPFNSLRNKVVLIVNVASHXAFTPQ-YKELEYLYEKYKSHGLVIVAFP 63
              Y F     +  P+     +   +LI NVAS   FT   Y+    LY KYK  G +++AFP
Sbjct: 234652 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 234473

Query: 64     CGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSGKSGIKMI 123
              C QF  QE   ++E+  F   ++   FPI+ K+  NG+ + P+Y +LKN+  G  G  ++
Sbjct: 234472 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLV 234293

Query: 124    KWNFEKFVVDRNGKVVKRFS 143
              KWNF  F+VD++G  V RF+
Sbjct: 234292 KWNFTAFLVDKDGHAVCRFA 234233



 Score =  105 bits (262), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
 Frame = -1

Query: 5      YSFSPIDENGNPFPFNSLRNKVVLIVNVASHXAFTPQ-YKELEYLYEKYKSHGLVIVAFP 63
              Y F     +  P+     +   +LI NVAS   FT   Y+    LY KYK  G +++AFP
Sbjct: 236978 YDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFP 236799

Query: 64     CGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSGKSGIKMI 123
              C QF  QE   ++E+  F   ++   FPI+ K+  NG+ + P+Y +LKN+  G  G  ++
Sbjct: 236798 CNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLV 236619

Query: 124    KWNFEKFVVDRNGKVVKRFS 143
              KWNF  F+VD++G  V RF+
Sbjct: 236618 KWNFTAFLVDKDGHAVCRFA 236559


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
 Frame = -3

Query: 1       MQEFYSFSPIDENGNPFPFNSLRNKVVLIVNVASHXAFTPQYKE-LEYLYEKYKSHGLVI 59
               M   +++S + +NG             LIVNVAS  +      E L  + + Y S    +
Sbjct: 1227184 MASVFTYSAV-QNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTV 1227008

Query: 60      VAFPCGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSGKSG 119
               +AFPC QF NQE   + EI ++C+D  G+ FP+  ++   G   DP+++ L+     + G
Sbjct: 1227007 LAFPCAQFANQEPLNNTEIAQWCED-LGLLFPVFDRVNVKGSSADPLFQMLR----AQQG 1226843

Query: 120     IKMIKWNFEKFVVDRNG 136
                 +  WN+ K++ DR+G
Sbjct: 1226842 APL--WNYTKYLCDRSG 1226798


>LmjF19_01_20050601_V5.2
              [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 27.3 bits (59), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 105    PVYKFLKNSVSGKSGIKMIKWNFEKFVVDRNGKVVKR 141
              P+Y+ L   V+ K G+ + + N E   V +NG+ +KR
Sbjct: 103334 PLYRALACRVANKDGLYVAEGNRETSHVGQNGRGIKR 103224


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000094_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Saccharomyces cerevisiae # Complete
         (162 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   137   5e-33
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    90   8e-19

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  137 bits (344), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
 Frame = -3

Query: 2      TTSFYDLECKDKKGESFKFDQLKGKVVLIVNVASKXGFTPQ-YKELEELYKKYQDKGFVI 60
              T S YD +      + +   Q KG  +LI NVASK GFT   Y+    LY KY+  GF++
Sbjct: 239316 TMSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMV 239137

Query: 61     LGFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLG 120
              L FPCNQF  QEPG++E++  F    +   FPIM+K+ VNG +   +Y+YLK+   G+LG
Sbjct: 239136 LAFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILG 238957

Query: 121    FKGIKWNFEKFLVDSNGKVVQRFSSLTKPSSLDQEIQSLL 160
                 +KWNF  FLVD +G  V RF+     S +++++  LL
Sbjct: 238956 TTLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 238837



 Score =  132 bits (331), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
 Frame = -1

Query: 3      TSFYDLECKDKKGESFKFDQLKGKVVLIVNVASKXGFTPQ-YKELEELYKKYQDKGFVIL 61
              +S YD +      + +   Q KG  +LI NVASK GFT   Y+    LY KY+  GF++L
Sbjct: 236987 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 236808

Query: 62     GFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGF 121
               FPCNQF  QEPG++E++  F    +   FPIM+K+ VNG +   +Y+YLK+   G+LG 
Sbjct: 236807 AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGT 236628

Query: 122    KGIKWNFEKFLVDSNGKVVQRFSSLTKPSSLDQEIQSLL 160
                +KWNF  FLVD +G  V RF+     S +++++  LL
Sbjct: 236627 TLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 236511



 Score =  132 bits (331), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
 Frame = -2

Query: 3      TSFYDLECKDKKGESFKFDQLKGKVVLIVNVASKXGFTPQ-YKELEELYKKYQDKGFVIL 61
              +S YD +      + +   Q KG  +LI NVASK GFT   Y+    LY KY+  GF++L
Sbjct: 234661 SSIYDFKVNGSDHQPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVL 234482

Query: 62     GFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGF 121
               FPCNQF  QEPG++E++  F    +   FPIM+K+ VNG +   +Y+YLK+   G+LG 
Sbjct: 234481 AFPCNQFAGQEPGTEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGT 234302

Query: 122    KGIKWNFEKFLVDSNGKVVQRFSSLTKPSSLDQEIQSLL 160
                +KWNF  FLVD +G  V RF+     S +++++  LL
Sbjct: 234301 TLVKWNFTAFLVDKDGHAVCRFAPGATVSEIEKKLLPLL 234185


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 89.7 bits (221), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
 Frame = -3

Query: 13      KKGESFKFDQLKGKVVLIVNVASKXGFTPQYKE-LEELYKKYQDKGFVILGFPCNQFGKQ 71
               + G++    +  G   LIVNVAS+        E L E+ + Y  + F +L FPC QF  Q
Sbjct: 1227154 QNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFPCAQFANQ 1226975

Query: 72      EPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGFKGIKWNFEKF 131
               EP ++ +I ++C+ + G+ FP+  +++V GS+AD ++  L++Q+   L      WN+ K+
Sbjct: 1226974 EPLNNTEIAQWCE-DLGLLFPVFDRVNVKGSSADPLFQMLRAQQGAPL------WNYTKY 1226816

Query: 132     LVDSNGKVVQRFSSLTKPSSLDQEIQSLL 160
               L D +G   ++        +L Q I+ +L
Sbjct: 1226815 LCDRSGVPRRKLEPGCSMDALRQSIECVL 1226729


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000095_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Saccharomyces cerevisiae # Complete
         (163 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...   134   4e-32
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    92   2e-19
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    31   0.47 
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    27   8.7  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score =  134 bits (336), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 1/147 (0%)
 Frame = -3

Query: 15     QPFPFDQLKGKVVLIVNVASKXGFTPQ-YKELEALYKRYKDEGFTIIGFPCNQFGHQEPG 73
              QP+   Q KG  +LI NVASK GFT   Y+   ALY +YK  GF ++ FPCNQF  QEPG
Sbjct: 239274 QPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFPCNQFAGQEPG 239095

Query: 74     SDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVD 133
              ++EE+  F    +   FPIM+K+ VNG +E P+Y +LK+   G+LG   +KWNF  FLVD
Sbjct: 239094 TEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLVKWNFTAFLVD 238915

Query: 134    KKGKVYERYSSLTKPSSLSETIEELLK 160
              K G    R++     S + + +  LL+
Sbjct: 238914 KDGHAVCRFAPGATVSEIEKKLLPLLQ 238834



 Score =  129 bits (324), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 1/147 (0%)
 Frame = -1

Query: 15     QPFPFDQLKGKVVLIVNVASKXGFTPQ-YKELEALYKRYKDEGFTIIGFPCNQFGHQEPG 73
              QP+   Q KG  +LI NVASK GFT   Y+   ALY +YK  GF ++ FPCNQF  QEPG
Sbjct: 236948 QPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFPCNQFAGQEPG 236769

Query: 74     SDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVD 133
              ++EE+  F    +   FPIM+K+ VNG +E P+Y +LK+   G+LG   +KWNF  FLVD
Sbjct: 236768 TEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLVKWNFTAFLVD 236589

Query: 134    KKGKVYERYSSLTKPSSLSETIEELLK 160
              K G    R++     S + + +  LL+
Sbjct: 236588 KDGHAVCRFAPGATVSEIEKKLLPLLQ 236508



 Score =  129 bits (324), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 1/147 (0%)
 Frame = -2

Query: 15     QPFPFDQLKGKVVLIVNVASKXGFTPQ-YKELEALYKRYKDEGFTIIGFPCNQFGHQEPG 73
              QP+   Q KG  +LI NVASK GFT   Y+   ALY +YK  GF ++ FPCNQF  QEPG
Sbjct: 234622 QPYDLGQHKGHPLLIYNVASKCGFTKGGYETATALYNKYKHLGFMVLAFPCNQFAGQEPG 234443

Query: 74     SDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVD 133
              ++EE+  F    +   FPIM+K+ VNG +E P+Y +LK+   G+LG   +KWNF  FLVD
Sbjct: 234442 TEEEVKSFACTRFKAEFPIMEKVCVNGEHEHPLYHYLKNTCKGILGTTLVKWNFTAFLVD 234263

Query: 134    KKGKVYERYSSLTKPSSLSETIEELLK 160
              K G    R++     S + + +  LL+
Sbjct: 234262 KDGHAVCRFAPGATVSEIEKKLLPLLQ 234182


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
 Frame = -3

Query: 12      KKGQPFPFDQLKGKVVLIVNVASKXGFTPQYKE-LEALYKRYKDEGFTIIGFPCNQFGHQ 70
               + G+     +  G   LIVNVAS+        E L  + + Y    FT++ FPC QF +Q
Sbjct: 1227154 QNGKTVVLQKYSGYATLIVNVASRCSLASTNIEMLNEVQQAYGSRRFTVLAFPCAQFANQ 1226975

Query: 71      EPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKF 130
               EP ++ EIAQ+C+ + G+ FP+  +++V G + DP+++ L++Q+   L      WN+ K+
Sbjct: 1226974 EPLNNTEIAQWCE-DLGLLFPVFDRVNVKGSSADPLFQMLRAQQGAPL------WNYTKY 1226816

Query: 131     LVDKKGKVYERYSSLTKPSSLSETIEELL 159
               L D+ G    +        +L ++IE +L
Sbjct: 1226815 LCDRSGVPRRKLEPGCSMDALRQSIECVL 1226729


>LmjF18_01_20050601_V5.2
             [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 30.8 bits (68), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -3

Query: 22    LKGKVVLIVNVASKXGFTPQYKELEALYKRYKDEGFTII-------GFPCNQFGHQEPGS 74
             L G+VVL            +++E EAL +R    G  ++       GF C  FGH+   +
Sbjct: 44511 LPGRVVLF-----------RWREREALERRKDRAGAFVVWGSLCLCGFSCTLFGHRHTTA 44365

Query: 75    DEEIAQFCQLNY 86
              E  AQ  QL +
Sbjct: 44364 CETRAQVLQLCF 44329


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 26.6 bits (57), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 71     EPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNE 103
              +PG    ++   +L +GVT PI++   V GG E
Sbjct: 394153 DPGESAVVSCEARLRHGVTLPILRLAWVQGGLE 394251


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000075_1.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Saccharomyces cerevisiae # Complete
         (184 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...   110   4e-25
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    29   1.5  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    29   2.4  
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    28   4.6  

>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score =  110 bits (276), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 12/167 (7%)
 Frame = +3

Query: 20     TLACGXFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQ 79
              T A G +WGTEH + +   D IV  +VG+  G E K     +V+Y  V  G T  AEVL 
Sbjct: 570108 TFAAGCYWGTEHFFVRNFKDSIVSHQVGFMGGIEGK-----AVTYSEVTKGTTGHAEVLD 570272

Query: 80     VSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKE----LAKIK 135
              + Y+P+ ++ ++L  FFFR+H+ TT N Q  D GT YRS +F H++   KE    +AK+ 
Sbjct: 570273 LMYDPEKVSYKDLLSFFFRMHNSTTVNRQAGDIGTNYRSAIFYHNEEQKKEAEAYIAKLN 570452

Query: 136    ---EEWQPKWGNKIA-----TVIEPIKNFYDAEEYHQLYLDKNPQGY 174
                 E+    +    A     T +E    FY A E HQ YL+K+P GY
Sbjct: 570453 GADEKLHSSFSKAFAGAPCITGLEKAGTFYPAHEGHQNYLEKHPNGY 570593


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 29.3 bits (64), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 61     SVSYKRVCGGDTDFAEVLQVSYNP 84
              SV Y+R CG    FA VL ++++P
Sbjct: 619960 SVLYRRTCGAHALFARVLSLAFSP 619889


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 28.9 bits (63), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 150    IEPIKNFYDAEEYHQLYLDKNPQ 172
              + P + +   E+YHQLY  KNP+
Sbjct: 626334 VNPDEEYRYTEDYHQLYYSKNPR 626402


>LmjF14_01_20050601_V5.2
              [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 27.7 bits (60), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 15     KDKLITLACGXFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVC 68
              + +L  +ACG +    H+    L  R++ C  G A G  +   +PSS  ++R C
Sbjct: 570731 QTELYAVACGAYVSPFHLDTSVL--RVLCC--GCALGRRTGSSTPSSTVHRRAC 570880


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000076_1.0 # Protein # Selenoprotein O (SelO) #
Saccharomyces cerevisiae # Complete
         (688 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    35   0.15 
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    32   2.2  

>LmjF34_01_20050601_V5.2
             [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 35.4 bits (80), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 518   KDKSDTATLFGAFDEEYLGMFFNSKQLQQMAETEEAFAAGEKVFDANGELRLL--NEKLQ 575
             KDK + A LF   D        N +Q     +T + F      FDA G++R L   EK Q
Sbjct: 68685 KDKPE-ARLFRLVDS-------NRQQWGFYNDTTDVFFVARFTFDAEGKVRALGDTEKEQ 68840

Query: 576   EIRNWTQDYLTLVPPTETAA 595
                N T+ YL  +PPTET A
Sbjct: 68841 NSDNETE-YLVSIPPTETVA 68897


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 31.6 bits (70), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 196195 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 196365



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 180403 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 180573



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 182377 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 182547



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 184351 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 184521



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 186325 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 186495



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 188299 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 188469



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 190273 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 190443



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 192247 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 192417



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 194221 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 194391



 Score = 31.2 bits (69), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 369    TAKRYSFANQPSI--IWWNLQQFAKDLACLLGPEARDLELLLKGEL--NSVDDALEKT 422
              T +    AN P +  +   L++ AKD A   GPEAR LE  + GEL   + +D  E+T
Sbjct: 178429 TLRELDMANDPDVKPLLAQLEELAKDPAAAKGPEARRLEKAI-GELARRAAEDEAERT 178599



 Score = 30.8 bits (68), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 368    DTAKRYSFANQPSIIWWNLQQFAKDL 393
              D  K YS+   P++ W++L++FA DL
Sbjct: 542294 DAEKGYSYTRFPAVTWFHLKRFAMDL 542217


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SPP00000077_1.0 # Protein # Selenoprotein R  (SelR) #
Saccharomyces cerevisiae # Complete
         (168 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    97   5e-21
LmjF07_01_20050601_V5.2 [~/leish/curated/chr7/LmjF07_01_20050601...    29   1.8  
LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    28   2.8  
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    28   3.4  
LmjF16_01_20050601_V5.2 [~/leish/curated/chr16/LmjF16_01_2005060...    28   4.1  
LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    27   6.3  

>LmjF28_01_20050601_V5.2
               [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 97.1 bits (240), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/138 (42%), Positives = 73/138 (52%)
 Frame = +3

Query: 26      QYWNKSKKMSDESNDVKWNDALTPLQLMVLRDKATERPNTGAYLHTNESGVYHCANCDRP 85
               Q  + SK MSDE    +W   LT  +  +LR+K T+ P  G Y    + G Y CA C  P
Sbjct: 1031706 QEKDGSKDMSDE----EWRRILTAQEYHILREKGTD-PVGGKYDDVFDEGEYVCAGCKTP 1031870

Query: 86      LYSSKAKFDARCGWPAFYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGHVFEGEGWK 145
               LY S  KF   CGWP FY+ + P  +    D      RVEI C  C  HLGHVF GEG++
Sbjct: 1031871 LYLSSMKFACGCGWPGFYDCI-PKRVREQPDRD--GRRVEIVCNVCNSHLGHVFRGEGFR 1032041

Query: 146     QLLNLPKDTRHXVNSASL 163
                  N P + RH VNS S+
Sbjct: 1032042 ---NPPPNERHCVNSTSI 1032086


>LmjF07_01_20050601_V5.2
              [~/leish/curated/chr7/LmjF07_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 596348

 Score = 28.9 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +1

Query: 106    VSPGAITYHR----DNSLMPARVEICCARCGGHLGHVFEGEGWKQLLNLPKDTRHXVNSA 161
              + PG +  HR    D S      E    RCG    HV E  GW++L       +H + + 
Sbjct: 444610 IRPGELVQHRCRKHDESAANGTTEFSRLRCGESPHHVMECCGWRRL-----RAKHGMQAG 444774

Query: 162    SL 163
              SL
Sbjct: 444775 SL 444780



 Score = 28.5 bits (62), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +1

Query: 106    VSPGAITYHR----DNSLMPARVEICCARCGGHLGHVFEGEGWKQLLNLPKDTRHXVNSA 161
              + PG +  HR    D S      E    RCG    HV E  GW++L       +H + + 
Sbjct: 461251 IRPGELVQHRCRKHDESAANGTTEFSRLRCGESPHHVMECCGWRRL-----RAKHGMQAG 461415

Query: 162    SL 163
              SL
Sbjct: 461416 SL 461421


>LmjF29_01_20050601_V5.2
               [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 28.1 bits (61), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 91      AKFDARCGWPAFYEEVSPGAITYHRDNSLMP 121
               A+   RCGWPAF    S      H D SL+P
Sbjct: 1177883 AQLAPRCGWPAFALSTS----GMHLDRSLLP 1177803



 Score = 28.1 bits (61), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 91      AKFDARCGWPAFYEEVSPGAITYHRDNSLMP 121
               A+   RCGWPAF    S      H D SL+P
Sbjct: 1166228 AQLAPRCGWPAFALSTS----GMHLDRSLLP 1166308



 Score = 28.1 bits (61), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 91      AKFDARCGWPAFYEEVSPGAITYHRDNSLMP 121
               A+   RCGWPAF    S      H D SL+P
Sbjct: 1186607 AQLAPRCGWPAFALSTS----GMHLDRSLLP 1186687


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 28.1 bits (61), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 122    ARVEICCARCGGH 134
              AR + CCARCGGH
Sbjct: 686557 ARCDGCCARCGGH 686595



 Score = 28.1 bits (61), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 122    ARVEICCARCGGH 134
              AR + CCARCGGH
Sbjct: 681391 ARCDGCCARCGGH 681429


>LmjF16_01_20050601_V5.2
              [~/leish/curated/chr16/LmjF16_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 714659

 Score = 27.7 bits (60), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -2

Query: 57     DKATERPNTGAYLHTNESGVYHCANCDRPLYSSKAKFDARCGWP-AFYEEVSPGAITYHR 115
              D A     + A LH  ++   HC    RP  SS++       WP +  E V+P      +
Sbjct: 177574 DDANSCTISTASLHVTKTRSSHCCAACRPCSSSRSLLPTSRSWPFSLCECVAP*GCGPPQ 177395

Query: 116    DNSLMPARVEICCARCGGH 134
                  +PAR     ARC G+
Sbjct: 177394 RGVRVPAR-----ARCEGN 177353


>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 26.9 bits (58), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 46     ALTPLQLMVLRDKATERPNTGAYLHT 71
              A  P+Q+M  + ++++RP    YLHT
Sbjct: 428637 ATLPMQMMAPKHRSSKRPRLEPYLHT 428714


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= EhSep2_emiliania_huxley; gi|182639182|sp|Q50KB1.2|SEP2_EMIHU
RecName: Full=Protein disulfide-isomerase-like protein EhSep2; Flags:
Precursor # 
         (223 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF26_01_20050601_V5.2 [~/leish/curated/chr26/LmjF26_01_2005060...    89   3e-18
LmjF06_01_20050601_V5.2 [~/leish/curated/chr6/LmjF06_01_20050601...    82   4e-16
LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    70   1e-12
LmjF34_01_20050601_V5.2 [~/leish/curated/chr34/LmjF34_01_2005060...    66   3e-11
LmjF30_01_20050601_V5.2 [~/leish/curated/chr30/LmjF30_01_2005060...    38   0.007
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    35   0.051
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    32   0.48 
LmjF18_01_20050601_V5.2 [~/leish/curated/chr18/LmjF18_01_2005060...    29   3.0  

>LmjF26_01_20050601_V5.2
              [~/leish/curated/chr26/LmjF26_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1091579

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
 Frame = -3

Query: 18     GAIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKK----VLIA 73
              G ++++ DNFD+LV K  KA  ++F APW GHCK M P++ +L + +E S      +L+ 
Sbjct: 185136 GIVQMSKDNFDQLVGKE-KAVLVEFYAPWCGHCKSMAPEYAALGAAYEASTNAKDLLLVG 184960

Query: 74     DVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKF 121
               VD T     L +++GV G+PTI YF P   E E YKGGR+ ++  K+
Sbjct: 184959 KVDATQDSD-LGKRFGVTGFPTILYFAPGSLEPEKYKGGRTAEDFAKY 184819



 Score = 81.6 bits (200), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
 Frame = -3

Query: 19     AIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDC- 77
              A+EL   NFD +V    KA  + F APW GHCK +KP +++LA  F + K V+IA ++  
Sbjct: 184764 AMELVHTNFDAVVKDPSKAVLVMFYAPWCGHCKALKPIYNTLAKVFSNDKDVVIARINAD 184585

Query: 78     TTGGKPLCEKYGVRGYPTIKYF-NPPDEEGEDYKGGRSLDELKKFAENELG 127
                  + +  +Y V G+PT+ +F    DE+  +YK GR+L++   F     G
Sbjct: 184584 DAANRKIATEYAVAGFPTVYFFPKGADEKPVEYKNGRNLEDFLTFVNENAG 184432


>LmjF06_01_20050601_V5.2
              [~/leish/curated/chr6/LmjF06_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 516874

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
 Frame = +2

Query: 17     AGAIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVD 76
              A  +EL P NF ++V    K  F+ F APW GHC  MKP W  LA  +  ++ V+IA +D
Sbjct: 440606 AEIVELNPANFHKVVKDPSKNVFVMFYAPWCGHCNNMKPMWLELADKYPTAEDVIIARID 440785

Query: 77     CTTGGKPLCEKYGVRGYPTIKYFNPPDEEGE-DYKGGRSL 115
               +   + + +++ +RG+PT+K+F+  D+ GE +Y G R L
Sbjct: 440786 ASE-YRGIAKEFDIRGFPTLKFFSKRDKSGEIEYDGPREL 440902



 Score = 50.8 bits (120), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +2

Query: 20     IELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTT 79
              +ELT D FD  V       F+ +   W   CK +   WD L+ T    +   +       
Sbjct: 478286 VELTRDTFDAYVGGPDSYTFVLYCVTWSRQCKTVTQLWDRLSITQSQKELRDVFTAAYVD 478465

Query: 80     GGK--PLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKF 121
              G K   L ++  V+G+PT+ ++ P   EG +Y G R    L  F
Sbjct: 478466 GDKYPDLVKRMNVKGFPTMLFYTPLHREGLEYNGPRESYLLDSF 478597


>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 55/85 (64%)
 Frame = -2

Query: 42      FLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNP 101
               F APW GHCKK+ P +D +A +FE S+ V+IA +D TT      EK+ V G+PTI YF P
Sbjct: 2662688 FYAPWCGHCKKLHPVYDKVAKSFE-SENVIIAKMDATTNDFDR-EKFEVSGFPTI-YFIP 2662518

Query: 102     PDEEGEDYKGGRSLDELKKFAENEL 126
                 +    Y+GGR+ DE++ F ++ L
Sbjct: 2662517 AGKPPIVYEGGRTADEIQVFVKSHL 2662443



 Score = 65.9 bits (159), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 62/114 (54%)
 Frame = -2

Query: 15      ASAGAIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIAD 74
               ASA     T DNFD++V  SG    +KF APW GHCK + P++   A     +    +A+
Sbjct: 2663765 ASAEVQVATKDNFDKVV--SGDLTLVKFYAPWCGHCKTLAPEFVKAADML--AGIATLAE 2663598

Query: 75      VDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGP 128
               VDCT   + L EKY ++G+PT+  F    E+ + Y G R+   +  + +  +GP
Sbjct: 2663597 VDCTK-EESLAEKYEIKGFPTLYIFR-NGEKVKIYDGPRTAAGIASYMKAHVGP 2663442


>LmjF34_01_20050601_V5.2
              [~/leish/curated/chr34/LmjF34_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1866754

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 3/165 (1%)
 Frame = -1

Query: 7      TLLCAAAGASAGAIELTPDNFDELVLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFED 66
              T L    G S+   ELTP +    V  + K   I F APW GHCK+  P+++  A + + 
Sbjct: 985399 TSLAYPYGRSSAVTELTPASLHAFV-NTHKPVVILFYAPWCGHCKQFHPEYERFAESVKG 985223

Query: 67     SKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDE---EGEDYKGGRSLDELKKFAE 123
              + +V   D D       + +++GVRG+PTIKY+    +     +DY+G R+   L+ +  
Sbjct: 985222 TIRVGAIDAD---KNAVIGQQFGVRGFPTIKYWKSGTKSVSSSQDYQGQRTAAALQSWMV 985052

Query: 124    NELGPGCSVDLMDNCSEEQKGKLKEYIDMAPEKRTEMLETLKKEL 168
                +    S  +M   + EQ   +K+    AP+K   +L + K ++
Sbjct: 985051 EGIS---SSKVMTVTTAEQ---IKQAARDAPKKMIGVLLSAKNKV 984935


>LmjF30_01_20050601_V5.2
              [~/leish/curated/chr30/LmjF30_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1403454

 Score = 37.7 bits (86), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 31     VLKSGKAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLC-EKYG 89
              V +S     I F A W G C+++KP ++ +A  ++ SK +      C       C  +YG
Sbjct: 333588 VQRSDVVTVIDFYAEWCGPCQQIKPQFEQMARYYDPSKVIF---AKCNVDRNRDCASRYG 333758

Query: 90     VRGYPTIKYFNPPD 103
              V   PT   F   D
Sbjct: 333759 VSTIPTFIVFYAND 333800


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 34.7 bits (78), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 40     IKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYF 99
              + F A W   C  +       A+ + D+  V+ A+VDC   G  +CE  GV   P + YF
Sbjct: 562562 VHFSATWCEPCTAVNEHLTKQAAEYGDN--VVFAEVDCGELGD-VCEAEGVESVPFVAYF 562732

Query: 100    NPP 102
                P
Sbjct: 562733 RTP 562741



 Score = 34.7 bits (78), Expect = 0.064,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 29/226 (12%)
 Frame = +3

Query: 20     IELTPDNFDELVLKSGKAAFIKFL----APWXGHCKKMKPDWDSLASTFEDSKKV----- 70
              + L   NF+  +  S +A    FL    +PW  HCK + P + + AS   D  KV     
Sbjct: 583596 VVLNNANFESYLFPSKRATPRAFLVLCYSPWCPHCKSLLPQFLN-ASMQLDLMKVPHSNF 583772

Query: 71     LIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFA---ENELG 127
               + DV   T    + E + V  +PT+ Y      +   Y+GG +     +F+   +N + 
Sbjct: 583773 AVVDVQKNTA---VSEYFDVERFPTLLYTTGKGRQWHLYEGGNTQQGFMQFSTYLQNAVD 583943

Query: 128    PGC-SVDLMD----NCSEEQKG--KLKEYI------DMAPE-KRTEMLETLKKELADAES 173
               G  S D+ D    N  EE+ G  ++  Y+        APE +RT          A   +
Sbjct: 583944 TGSFSEDVTDVSHFNEVEEKGGTTRVPCYVYVPATSSSAPESQRTAHWSHAIDGAASVSN 584123

Query: 174    THEALLKE---LQATYKESMDKLEKLKEESAPKIKLLKAATPAPKA 216
                 A++ E    +   + + DK +K+ E++   +   KA+ P  +A
Sbjct: 584124 IRFAVIYEKSQAEGWAEHASDKYKKVVEKAKACVAAGKASGPGGEA 584261


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 31.6 bits (70), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -2

Query: 36     KAAFIKFLAPWXGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPT 95
              K   + F A W G CK + P  ++LAS  +      + DVD T     +   Y VR  PT
Sbjct: 265421 KLTVVDFFATWCGPCKAIAPLLENLASRKQHINFAKV-DVDRTPD---VIRDYPVRAMPT 265254

Query: 96     IKYF 99
                +F
Sbjct: 265253 FYFF 265242


>LmjF18_01_20050601_V5.2
              [~/leish/curated/chr18/LmjF18_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 739751

 Score = 28.9 bits (63), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 89     GVRGY-PTIKYFNPPDEEGEDYKGGRSLDELKKFAENELGPGCSV 132
              G +G  PT  +FNPP   G+  +  RSL  L +  +    P C++
Sbjct: 427255 GAKGITPTPLHFNPPPSSGQPSR--RSLSHLLRLCDPTPSPSCTI 427383


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|82547872:1-117 selenoprotein 1 [Leishmania major]
         (117 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...   166   2e-42
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    27   2.3  
LmjF28_01_20050601_V5.2 [~/leish/curated/chr28/LmjF28_01_2005060...    26   5.6  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    26   6.3  
LmjF24_01_20050601_V5.2 [~/leish/curated/chr24/LmjF24_01_2005060...    26   6.4  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    25   8.1  
LmjF22_01_20050601_V5.2 [~/leish/curated/chr22/LmjF22_01_2005060...    25   8.3  
LmjF31_01_20050601_V5.2 [~/leish/curated/chr31/LmjF31_01_2005060...    25   9.6  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score =  166 bits (421), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/116 (99%), Positives = 115/116 (99%)
 Frame = -2

Query: 1       MRVLRHTGTCSDIAVDATESSAATHHKQADSQATTKENEYPFSTILLIMDLXENWRIALY 60
               MRVLRHTGTCSDIAVDATESSAATHHKQADSQATTKENEYPFSTILLIMDL ENWRIALY
Sbjct: 2354978 MRVLRHTGTCSDIAVDATESSAATHHKQADSQATTKENEYPFSTILLIMDL*ENWRIALY 2354799

Query: 61      FVLAVSRSSHSPSSPAPTVLRQLPPLVPLLAALCFYSSTAAAAHTAIETRERWSWT 116
               FVLAVSRSSHSPSSPAPTVLRQLPPLVPLLAALCFYSSTAAAAHTAIETRERWSWT
Sbjct: 2354798 FVLAVSRSSHSPSSPAPTVLRQLPPLVPLLAALCFYSSTAAAAHTAIETRERWSWT 2354631



 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -1

Query: 1       MRVLRHTGTCSDIAVDATESSAATHHKQADSQATT----KENEY 40
               MRV    GTCS  +    +  A+ H   ++S+A+T     EN Y
Sbjct: 1688106 MRVSHKEGTCSSDSAYKKQHKASKHQHASESRASTTI*QTENTY 1687975



 Score = 25.4 bits (54), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 19/56 (33%)
 Frame = -3

Query: 62      VLAVSRSSHSPSSPAPTVLRQLPPLVPLLAALCFYSSTAAAAHTAIETRERWSWTR 117
               VL   R   SP        R  P    L AAL               TRERWSW R
Sbjct: 2558245 VL*APRLRRSPGDWRAAFCRGAPVCTALFAALLHLCDRQ-------RTRERWSWRR 2558099


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 63     LAVSRSSHSPSSPAPTVLRQLPPLVPLLAALCFYSST 99
              L++S S  +  SP+P  LR  P   P+L  L F SST
Sbjct: 570153 LSLSLSLPNAPSPSPYCLRASPLSFPVLVLLPFRSST 570043


>LmjF28_01_20050601_V5.2
              [~/leish/curated/chr28/LmjF28_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1160128

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 11     SDIAVDATESSAATHHKQADSQATTKEN 38
              +D+AV+  E S A HH QAD+Q  + E+
Sbjct: 661037 ADVAVE-VEVSDAEHHGQADTQCNSAES 661117


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 76      APTVLRQLPPLVPLLAALCFYSSTAAAAHTAIETRERWSWTR 117
               A T  RQ PP +P L A    + T +A+ +A      W W R
Sbjct: 1278338 AVTAGRQHPPYLPCLLADHLCACTMSASTSADYPVNSWVWVR 1278463


>LmjF24_01_20050601_V5.2
              [~/leish/curated/chr24/LmjF24_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 840950

 Score = 25.8 bits (55), Expect = 6.4,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 20/60 (33%)
 Frame = +2

Query: 64     AVSRSSHSPSSPAP--------------------TVLRQLPPLVPLLAALCFYSSTAAAA 103
              A  R SHSPSSP P                    T +R+L P  P L ALC  S   A A
Sbjct: 413369 AAVRMSHSPSSPRPLRAFTCCLTSAFFRHNALTDTRVRRLAPTYPPLLALCVPSQRVARA 413548


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 61     FVLAVSRSSHSPSSPAPTVLRQLPPLVPLLAALCFYSSTAAAAHTAIETRER 112
              ++L V+    S ++P P   R LPP +P  + L  ++   AA HT+   R R
Sbjct: 809679 WLLCVAAFPFSCTAPPPRS*RDLPPWLPHHSLLA-HARVNAAEHTSGPRRHR 809527


>LmjF22_01_20050601_V5.2
             [~/leish/curated/chr22/LmjF22_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 716608

 Score = 25.4 bits (54), Expect = 8.3,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 70    HSPSSPAPTVLRQLPPLVP 88
             H+P  PA T + Q PPL P
Sbjct: 64874 HAPGPPAATRMMQAPPLPP 64818


>LmjF31_01_20050601_V5.2
              [~/leish/curated/chr31/LmjF31_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1484336

 Score = 25.4 bits (54), Expect = 9.6,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 55     WRIALYFVLAVSRSSHSPSSPAPTVL 80
              W    YF L  SR  H P SP   VL
Sbjct: 314610 WCFYFYFCLYGSRPLHGPPSPCARVL 314533


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # 
         (116 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF21_01_20050601_V5.2 [~/leish/curated/chr21/LmjF21_01_2005060...    27   2.1  
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    27   2.8  

>LmjF21_01_20050601_V5.2
              [~/leish/curated/chr21/LmjF21_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772974

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 84     DDGFFKKKRTGGLPKSR 100
              D G F + R GGLP+SR
Sbjct: 463336 DSGVFHESRLGGLPRSR 463286


>LmjF11_01_20050601_V5.2
             [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 79    KNNDDDDGFFKKKRTGGLPKSRIMELK-NLGTC 110
             +N D+DDG   +  +GGL + R+ EL+   GTC
Sbjct: 65566 ENGDEDDGAVFRSTSGGLER-RLAELRAGSGTC 65471


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Sel2  protein; PFI1515w Plasmodium falciparum # 
         (229 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF29_01_20050601_V5.2 [~/leish/curated/chr29/LmjF29_01_2005060...    32   0.57 

>LmjF29_01_20050601_V5.2
              [~/leish/curated/chr29/LmjF29_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1212674

 Score = 31.6 bits (70), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 110    KYILFLMSIQPPLFFTLICYFILFIFILIALNIYLPKHCEFFIPSFLL 157
              +Y + L ++  PLFF   C  +  + ++ A ++ L     FF+PSF +
Sbjct: 159099 RYTVLLSTVSLPLFFAPWCVCVC-VLVIAAFSLSLCPRLLFFLPSFFV 158959



 Score = 27.7 bits (60), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 114    FLMSIQPPLFFTLICYFILFIFILIALNIYLPKHCEFFIPSFLLNNTKFIETF 166
              F++SI PP    +       + +L+ L  +LP  C FF+    ++  + + +F
Sbjct: 170518 FVLSISPPSLV*VRPSLFPLLCVLVTLYYHLPSSCCFFLQHCCVSRLRHLRSF 170360


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Sel3  protein; MAL8P1.86 Plasmodium falciparum # 
         (351 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done

 ***** No hits found ******


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Sel4  protein; PF14_0251  Plasmodium falciparum # 
         (135 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    28   2.0  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    27   3.1  
LmjF25_01_20050601_V5.2 [~/leish/curated/chr25/LmjF25_01_2005060...    27   4.4  

>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 28.1 bits (61), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 99     PKLGSKDNSSFNHLNDYSNYYRP 121
              P+   K + S  H ND+SN YRP
Sbjct: 685930 PREAKK*DESIPHRNDHSNTYRP 685862


>LmjF33_01_20050601_V5.2
              [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 27.3 bits (59), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +2

Query: 3      TNENMKNVKDMMSFTTKNIIYIFIGISLLIFIYKILKKNKKDAEVKRNNEISIKMKLSRE 62
              T  +   +K ++ FT      ++IGI     IY++ +K ++  E+K  N   +    + E
Sbjct: 743999 TRLDTGTLKKILGFTCFLFALVYIGI----MIYRVWRKKRQVEELKSRNVKLVVEADALE 744166

Query: 63     KQLQELDKEMMINKEKMKEQNIKKN 87
              ++ Q   K  M+N       N+  N
Sbjct: 744167 EEAQLSLKTSMVNLHASFVHNVPNN 744241


>LmjF25_01_20050601_V5.2
              [~/leish/curated/chr25/LmjF25_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 912849

 Score = 26.9 bits (58), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 102    GSKDNSSFNHLNDYSNYYRPSLKNRFYNN 130
               +KDN   NH+N   NYY  +   ++Y+N
Sbjct: 288095 AAKDNQQPNHVNTKPNYYGGNGVPQYYHN 288181


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SelQ_toxoplasma_gondii_gladyshev # 
         (66 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    27   2.8  

>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 26.6 bits (57), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 39     PQNPHLAPRFRPNVNDRYQIRRG 61
              P +PH+    R + + R Q+RRG
Sbjct: 577766 PPSPHICAHIRADADARGQVRRG 577834


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...   101   5e-22
LmjF14_01_20050601_V5.2 [~/leish/curated/chr14/LmjF14_01_2005060...    30   1.6  

>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score =  101 bits (252), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 89/152 (58%)
 Frame = +3

Query: 98     HEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIG 157
              H + V YC+G GY +++E++ + L  +LP     Q+      ++ VG  Y     R    
Sbjct: 510327 HALEVLYCTG*GYAKYFEDMKQQLQHTLP---NAQE------VRIVGGTYPTPPARALAA 510479

Query: 158    NILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFE 217
               + ST FLAS+ ++     L   LPP +  +I Q RGM++GAGF++NM+  +L Q+GAFE
Sbjct: 510480 KVCSTAFLASLGVALAGQQLV-FLPPTVLNFIAQQRGMLIGAGFLLNMIGGALGQTGAFE 510656

Query: 218    VYLNGSLIYSKLETGAVPTAETLADHILRQII 249
              V L+G LI+SKL+ GAVP    +   +L++ +
Sbjct: 510657 VSLDGELIFSKLQAGAVPAVAEIRRIVLQKTL 510752



 Score = 77.8 bits (190), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
 Frame = +1

Query: 94     DTVQHEVRVEYCSGXGYRRHYE----EVAESLLRSLPPELREQQKGKKPFIKFVGVVYSV 149
              D  QHEV V Y    GY   +E    E+ ES + SLP  L + Q         VG  Y +
Sbjct: 508084 DEAQHEVLVLYNEANGYGSKFEVLRKELQESEVVSLP-NLADLQ--------IVGQAYPM 508236

Query: 150    GAFREFIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASS 209
                 R  I   L   F  ++ ++     L+  +P  +   +   RG++   GF++N+++ +
Sbjct: 508237 SPRRVLISKALQGAFFGTLGLALMGDQLK-FIPESVLAVLRARRGLITSTGFLLNVLSRA 508413

Query: 210    LLQSGAFEVYLNGSLIYSKLE-TGAVPTAETLADHIL-RQIISGTAAGTRTA 259
               LQ+ AFEV+L+G LIYS L  +G VPTAE L++ +L R ++    A  +TA
Sbjct: 508414 ALQNNAFEVFLDGELIYSALNASGRVPTAELLSNLLLERTLLKDYYAAAKTA 508569



 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
 Frame = +3

Query: 36     DYSSHRYKYLEMLKEADLKQMLHEKGEA---FHHLRSKRELILAVLKLEKREEALR--KA 90
              +++   Y YL+ML E DL+QML+EK          R K+EL+ AV KLE+RE+A      
Sbjct: 509814 EHNKDPYAYLDMLDEVDLQQMLYEKTHGRVQVSAFRDKKELVAAVRKLEEREDAESSFNE 509993

Query: 91     RVTDTVQHE 99
              RVT  +Q +
Sbjct: 509994 RVTAAMQRK 510020


>LmjF14_01_20050601_V5.2
             [~/leish/curated/chr14/LmjF14_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 622648

 Score = 30.0 bits (66), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 166   ASIAISFFAPFLRGALPP--HIAEWIEQHRGMVVG 198
             A+++ S +A F R A  P  H+  WI++HRG V G
Sbjct: 38835 AALSWSAYATFARLAHSPFPHLDYWIKKHRGRVAG 38731


TBLASTN 2.2.17 [Aug-26-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= Tb10.6k15.1835 |SelK||selenoprotein, putative|Trypanosoma
brucei|chr 10|||Manual
         (89 letters)

Database: genome 
           36 sequences; 32,855,403 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

LmjF36_01_20050601_V5.2 [~/leish/curated/chr36/LmjF36_01_2005060...    56   4e-09
LmjF35_01_20050601_V5.2 [~/leish/curated/chr35/LmjF35_01_2005060...    32   0.053
LmjF11_01_20050601_V5.2 [~/leish/curated/chr11/LmjF11_01_2005060...    27   1.7  
LmjF32_01_20050601_V5.3 [~/leish/curated/chr32/LmjF32_01_2005060...    27   2.1  
LmjF15_01_20050601_V5.2 [~/leish/curated/chr15/LmjF15_01_2005060...    27   2.9  
LmjF33_01_20050601_V5.2 [~/leish/curated/chr33/LmjF33_01_2005060...    27   3.2  
LmjF19_01_20050601_V5.2 [~/leish/curated/chr19/LmjF19_01_2005060...    25   6.6  
LmjF09_01_20050601_V5.2 [~/leish/curated/chr9/LmjF09_01_20050601...    25   7.4  
LmjF23_01_20050601_V5.2 [~/leish/curated/chr23/LmjF23_01_2005060...    25   8.4  

>LmjF36_01_20050601_V5.2
               [~/leish/curated/chr36/LmjF36_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 2682183

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 30/119 (25%)
 Frame = -2

Query: 1       MVYIENGRIVEQRGFSLVDTFFSIVDGVCLFFQTMFSSEPPQQVVE-------------- 46
               M YI NGR+VE++ F++     ++   + LF QT+F+++P  QVVE              
Sbjct: 2356034 MAYIHNGRVVEKKPFTVRGFLLALWTALSLFAQTLFTTQPMSQVVEEHQHPAPRAANAAA 2355855

Query: 47      ---------RPVLRGRRGYIF-------GGRRPADDHPRSNVHTLPKESLTGGCASGXG 89
                        R +L  R G           G   A +    NVHTLPK  ++GGCASG G
Sbjct: 2355854 DGGGILGSLRAMLNRRGGGGQALGGGGNSGWASAVNRRGGNVHTLPKAPISGGCASG*G 2355678


>LmjF35_01_20050601_V5.2
              [~/leish/curated/chr35/LmjF35_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 2090491

 Score = 32.3 bits (72), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 51     RGRRGYIFGGRR-PADDHPRSNVHTLPKESLTGGC 84
              RG  G   G RR PAD HPR++ H +P  + T GC
Sbjct: 440300 RGGVGRGSGERRSPADAHPRAHEHQIPSGTDTNGC 440196



 Score = 25.8 bits (55), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 51      RGRRGYIFGGRRPADDH 67
               RGR+GY+ GGRR    H
Sbjct: 1921105 RGRQGYVKGGRRAQATH 1921055


>LmjF11_01_20050601_V5.2
              [~/leish/curated/chr11/LmjF11_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 582575

 Score = 27.3 bits (59), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = -3

Query: 58     FGGRRPADDHPRSNVHTLPKES------LTGGCASGXG 89
              F  R PAD  PRS +  L + +       +GGCA+G G
Sbjct: 352281 FEPRVPADPQPRSGLQLLLRPARFVGLGASGGCANGIG 352168


>LmjF32_01_20050601_V5.3
              [~/leish/curated/chr32/LmjF32_01_20050601_V5.3.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 1604650

 Score = 26.9 bits (58), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 52     GRRGYIFGGRRPADDHPRSNV 72
              GRRG++F   RPAD   RS+V
Sbjct: 788797 GRRGWVFALLRPADAPKRSHV 788735



 Score = 26.2 bits (56), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 37      SSEPPQQVVERPVLRGRRGYIFGGRRPADDHPRSNVHTLPKE 78
               S  PP+   ER   RGR  Y+       + H R++V T  +E
Sbjct: 1339669 SLRPPRAQREREPTRGRHAYVRATAERNESHARTDVCTREEE 1339544


>LmjF15_01_20050601_V5.2
              [~/leish/curated/chr15/LmjF15_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 629514

 Score = 26.6 bits (57), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 33     QTMFSSEPPQQVVERPVLRGRRGYIFGGRRPA 64
              +T FSS PP +   RP LRG  G     R+P 
Sbjct: 329058 ETEFSSAPPVRRAGRPTLRGGPGPPNHARQPG 328963


>LmjF33_01_20050601_V5.2
               [~/leish/curated/chr33/LmjF33_01_20050601_V5.2.artemis] This
               data was sequenced at the Sanger Institute or SBRI
          Length = 1583673

 Score = 26.6 bits (57), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 61      RRPADDHPRSNVHTLPKESLTGGCAS 86
               RRP DD  R   H+ P+  +   CAS
Sbjct: 1090933 RRPFDDASREVHHSRPRHGVVRACAS 1090856


>LmjF19_01_20050601_V5.2
             [~/leish/curated/chr19/LmjF19_01_20050601_V5.2.artemis]
             This data was sequenced at the Sanger Institute or SBRI
          Length = 702212

 Score = 25.4 bits (54), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 57    IFGGRRP--ADDHPRSNVHTLPKESLTGGCA 85
             + G RR   A  HPRS++  LP+++  G C+
Sbjct: 40203 VMGVRRSLEAGRHPRSDLAALPRDNAIGDCS 40295


>LmjF09_01_20050601_V5.2
              [~/leish/curated/chr9/LmjF09_01_20050601_V5.2.artemis] This
              data was sequenced at the Sanger Institute or SBRI
          Length = 573441

 Score = 25.4 bits (54), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 59     GGRRPADDHPRSNVHTLPK 77
              G  +PA  HPR N H LPK
Sbjct: 510980 GASQPAT-HPRINAHKLPK 510927


>LmjF23_01_20050601_V5.2
              [~/leish/curated/chr23/LmjF23_01_20050601_V5.2.artemis]
              This data was sequenced at the Sanger Institute or SBRI
          Length = 772567

 Score = 25.0 bits (53), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +1

Query: 41     PQQVVERPVLRGRRGYIFGGRRPADDHPRSNVHTLP---KESLTGGCASGXG 89
              PQQ++  PV +  RG     R     HP   VH  P   +E     C SG G
Sbjct: 147448 PQQLLRFPVRKASRGRAIAARNFHPAHP-VRVHRAPIHARERRRHSCCSGGG 147600


  Database: genome
    Posted date:  Jan 30, 2008  8:57 PM
  Number of letters in database: 32,855,403
  Number of sequences in database:  36
  
Lambda     K      H
   0.312    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 36
Number of Hits to DB: 1,595,634,481
Number of extensions: 32921352
Number of successful extensions: 509610
Number of sequences better than 10.0: 72
Number of HSP's gapped: 444694
Number of HSP's successfully gapped: 40155
Length of database: 10,951,801
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 53 (25.0 bits)
