Command line: [exonerate -m p2g --showtargetgff -q Sel2senseU.fa -t Sel2contig.fa]
Hostname: [localhost]

C4 Alignment:
------------
         Query: Sel2  protein; PFI1515w Plasmodium falciparum # QUERY
        Target: gi|56492988|emb|CAAI01004406.1| UNBERG.2.18912, whole genome shotgun sequence:[revcomp]
         Model: protein2genome
     Raw score: 220
   Query range: 1 -> 89
  Target range: 302 -> 47

   2 : LysAlaTyrTyrValValIleIleLeuLysValValLeuLeuLeuPhePheSerTyrAspPheI :  23
       |||  !||||||:!!  !:!!.!!||||||:!! !!  !|||:!!|||!!.|||||||||||||
       LysMetTyrTyrLeuLysLeuPheLeuLysLeuPheAlaLeuIlePheLeuSerTyrAspPheI
 302 : AAAATGTATTATTTAAAGCTTTTTTTAAAGCTATTTGCATTAATTTTTTTGAGTTATGATTTTA : 239

  24 : lePheLeuLysAsnGluAspAsnIleIleLysGlyLysGlySerSerPheLeuLysSerSerTy :  44
       || !!||||||||||||! !! !|||   |||         !!!! !|||!!!|||!.!|||||
       leValLeuLysAsnGluAlaIleIleGluLys---------ArgTyrPhePheLysLysSerTy
 238 : TTGTTTTAAAGAATGAAGCTATTATAGAGAAA---------AGATATTTTTTTAAAAAAAGCTA : 185

  45 : rGluLeuLeuPheValGlnLysAspValLeuLeuProHisIleLysLysAsnAsnGlnIleSer :  65
       |!!:  !||||||!.!|||!:!|||  !|||! ! !!:!!|||!!.:!!:!!||||||||||||
       rAspAlaLeuPheAlaGlnArgAspArgLeuProSerTyrIleAsnGlnAspAsnGlnIleSer
 184 : TGATGCTTTATTTGCACAAAGGGATAGATTACCTTCATATATAAATCAAGATAATCAAATATCT : 122

  66 : IlePheLeuCysArgSerUnkGlnSerGlnTyrIleIleAsnLysIleLysAsnTyrPheAspI :  87
       |||!:!!!!|||||||||   ||||||||||||:!!:!!!:!||||||||||||||||||||||
       IleTyrPheCysArgSer***GlnSerGlnTyrValLeuSerLysIleLysAsnTyrPheAspI
 121 : ATATATTTTTGTAGATCATGACAATCCCAATATGTTTTAAGTAAAATAAAAAATTATTTTGATA :  56

  88 : leLeuAsn :  89
       ||||||||
       leLeuAsn
  55 : TATTAAAT :  48

vulgar: Sel2 1 89 . gi|56492988|emb|CAAI01004406.1| 302 47 - 220 M 32 96 G 3 0 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome 1.4.0
##date 2009-02-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|56492988|emb|CAAI01004406.1|	exonerate:protein2genome	gene	48	302	220	-	.	gene_id 1 ; sequence Sel2 ; gene_orientation .
gi|56492988|emb|CAAI01004406.1|	exonerate:protein2genome	cds	48	302	.	-	.	
gi|56492988|emb|CAAI01004406.1|	exonerate:protein2genome	exon	48	302	.	-	.	insertions 0 ; deletions 3
gi|56492988|emb|CAAI01004406.1|	exonerate:protein2genome	similarity	48	302	220	-	.	alignment_id 1 ; Query Sel2 ; Align 303 2 96 ; Align 207 37 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
