Resultados genewise para las proteínas de Drosophila
>>> SelH
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: gi|28571177|ref|NP_572903.3|
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig3887:subseq(13500,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 26.38 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
gi|28571177|ref 123 QESKEQINTQKLSKIDLPGSEALASPKKSESTEEAQENEAPTSTSTSRK
+++KE +++ K D E A P+ ES++ Q E+ + +R+
EQAKEAQESKEHDKADSAKEEQAAEPESKESSDAEQTTESGSEDQGNRE
Contig3887:subs 1397 gcgaggcgtagcgaggtgaggcgggcgaagtagggcaagtgaggcgacg
aacaacaacaaaaacaccaaaaccacagaacgacaaccacggaaagaga
agaaacgacaattagttaggagtgaggcgaacctggtgactcatgtcga
gi|28571177|ref 172 SKKEQKSEEEPTQVDSK
+KK E + D K
NKKSDDKAEAGKEADGK
Contig3887:subs 1544 aaatggaggggagggga
aaacaaacacgaacaga
caacccaaaacgatcca
//
>>> SelK
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: gi|28571165|ref|NP_572763.3|
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4132:subseq(12000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 26.40 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
gi|28571165|ref 59 GGGGGWGGGGGGGGGGGGGRPGSGSGGLRP
GGG G G G GG G PGSGS +P
GGGKGPASGAGQQGGTSKGSPGSGSKATQP
Contig4132:subs 1156 gggagcgtgggccggaaagtcgagtagacc
gggagcccgcgaaggcgagccgggcaccac
tttggttccttgattatgtagctttatggt
//
>>> Secp43
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: gi|28574707|ref|NP_608837.2|
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4184.3:subseq(106000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 62.74 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
gi|28574707|ref 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFI
L++G L +TE ++ F +G ++R+ R+ T + GY +VN+
LYVGDLLPEVTEAMLYEVFNGVG-PVASIRVCRDSVTRKSLGYAYVNYY
Contig4184.3:su 942 ctgggcccggaggattggtaggg cggtacgtcgagacaatgtgtgatt
tatgattcatcacttaattagtg ctcctgtggagtcgagtgacataaa
acgcttccgtgggggcatctaaa tgtcatcctcctgtgtgtttcgtcc
gi|28574707|ref 57 SDDHALDAMHKLNGKPIPGTNPIVRFRLNSASNSYKLPGNEREFSVWVG
+ A A+ LN I G P R+ + S + G ++V
NVQDAETALECLNYIDIKG-HP-ARIMWSDRDPSLRKSGTG---NIFVK
Contig4184.3:su 1086 agcgggagcgttatagaag cc gcaatagagcatcaagag aatga
ataacacctagtaatatag ac cgttggagacgtgaggcg attta
cagcaatgcgtattcctgt ct ttcggccacctgtactat tccgg
gi|28574707|ref 106 DLSSDVDDYQLYKVFSSKFTSIKTAKVILDSLGFSKGYGFVRFGIEDEQ
+L +D LY FS F +I + KV +D+LG SKGYGFV + E+
NLDKAIDTKALYDTFSH-FGTILSCKVAMDALGNSKGYGFVHYTTEESA
Contig4184.3:su 1218 acgagagaagctgatac tgaacttaggaggcgatagtgtgctaaggag
ataactacactaactga tgcttcgatctactgacagagttaaccaagc
cccactccgagtcgctt ccttgtcagcgctcctcgttacgtcgtggca
gi|28574707|ref 155 KSALYDMNGYI
K A+ +NG +
KEAIEKVNGML
Contig4184.3:su 1362 aggagagagac
aactaatagtt
gacaaggtcgt
//
>>> SLA/LP
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: gi|45550694|ref|NP_649556.2|
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig3744:subseq(500,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 24.87 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
gi|45550694|ref 113 LLARLTNALI--LDLIRGIGLPSC-----AGCFL--VPMCTGMTLTLCL
L+ARLT L L L G LP C A C++ +C G +L LCL
LVARLTLRLCASLALCLGARLPLCLVASLARCLVASLALCPGASLALCL
Contig3744:subs 1816 cggataccctgatgctcggatcctcggatgcttggatgctcggatgctt
ttcgtctgtgcgtctgtgcgtctgttcgtcggttcgtctgcgcgtctgt
gttgaatcgtccaatcgttgaatcgtccaatcgttcaatcgttcaattg
gi|45550694|ref 153 QSLRKRRPGARYVLW
+ PGAR L+
VACLALWPGARLALF
Contig3744:subs 1963 ggttgctcggatgct
tcgtctgcgcgtctt
ttcaacgattgaatc
//
>>> PSTK
genewise $Name: wise2-2-0 $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright
Query protein: gi|19920352|ref|NP_608329.1|
Comp Matrix: blosum62.bla
Gap open: 12
Gap extension: 2
Start/End default
Target Sequence Contig4120:subseq(30000,3000)
Strand: forward
Start/End (protein) default
Gene Paras: human.gf
Codon Table: codon.table
Subs error: 1e-05
Indel error: 1e-05
Model splice? model
Model codon bias? flat
Model intron bias? tied
Null model syn
Algorithm 623
genewise output
Score 28.94 bits over entire alignment
Scores as bits over a synchronous coding model
Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info
gi|19920352|ref 153 DVVRQMNERLEVPDTSEAWERNSLTLNGLDMDTTGSALLAFIASLLD
D+V+ RLE P A++R S L+G+D D T AL LLD
DIVKAAMRRLEYP-LQVAFKRLSFALSGVDADDTSRALTQRSRDLLD
Contig4120:subs 1157 gagaggaaacgtc tcggtaccttgcaggggggatagtacctagctg
attacctggtaac tatctagtctctggtacaaccgctcagcgatta
cctggggagggcg ggtataccaccccccctctctgggaggcatggt
//